>THII_BACHD (Q9K804) Probable thiamine biosynthesis protein thiI|
          Length = 404

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 16/79 (20%), Positives = 38/79 (48%)
 Frame = +1

Query: 19  YYYTRINLNITGVYGTSSTTANKEPKERVIDQSIVVVVCAIQLRIQLVPLAAVDAKISSK 198
           YY  +  + +  ++  S    N++ K++V+D +  +     Q+++ +VP   +   I  K
Sbjct: 197 YYLLKRGVTLEAIHFHSPPFTNEKAKQKVVDLAAKLTNFGGQVKLHIVPFTELQKHIHEK 256

Query: 199 IYIHSNGTVVNRIQARGEE 255
           +  +   T++ R+  R  E
Sbjct: 257 VPSNMEMTIMRRMMLRISE 275

>SECY_BUCAI (P57571) Preprotein translocase secY subunit|
          Length = 437

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +1

Query: 52  GVYGTSSTTANKEPKERVIDQSIVVVVCAIQLRIQLVPLAAVDAKISSKIYIHSNGTVVN 231
           G+   ++ T+  E K+R++   + ++V  I      +P+  +D  I SKI  + NGT+V+
Sbjct: 6   GLNFKNTKTSVSELKQRIVFLIVAIIVFRIG---SFIPIPGIDTTILSKILNNQNGTIVD 62

>EFTS_CHLMU (P71146) Elongation factor Ts (EF-Ts)|
          Length = 282

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
 Frame = +1

Query: 34  INLNITGVYGTSSTTANKEPKERVID-QSIVVVVCAIQLRIQLVPLAAVDAKISSKIYIH 210
           +N  ++ V   +  T+++EP   V + +++ +      +RI       V++  S  IY H
Sbjct: 101 LNNKLSDVDALAQVTSSQEPSLSVEELKAVTMQTVGENIRISRALYTPVNSNQSVGIYSH 160

Query: 211 SNGTVVNRIQARGEERRDRTGSD---------PQTSTKESNP 309
            NG  V  +   G ++++    D         PQ  +KES P
Sbjct: 161 GNGKAVALVFLSGSDKQEALAKDIAMHIVASQPQFLSKESVP 202

>PRIM_MYCPU (Q98QB3) DNA primase (EC 2.7.7.-)|
          Length = 602

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 142 QLRIQLVPLAAVDAKISSKIYIHSNGTVVNRIQARGEERRDRTGSDPQTSTKESNPWRNQ 321
           QL I +  +A    K+S K  +HSN  +V+ +++RG  R   T S+ +    + N W+  
Sbjct: 110 QLFIDVTSIANHYFKVSLKSQVHSNSKLVDFLKSRGISR--ETASEFEIGYDDGNFWKIP 167

Query: 322 NQ 327
           N+
Sbjct: 168 NK 169

>ILF2_XENTR (Q6P8G1) Interleukin enhancer-binding factor 2 homolog|
          Length = 388

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 WDGGQSNPSERRGEKRPDR-IGSPNEHQGIESMAESEPDL 332
           WDG    PSE+  EK P+R  G  +E+Q I   AE E  +
Sbjct: 345 WDGVIVTPSEKAYEKPPERKEGEEDENQDIPEGAEEEESM 384

>U183_DROME (Q9VSH9) UPF0183 protein CG7083|
          Length = 438

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 344 PTDCKVWF*FRHGFDSLVLVWGSDPVRSLLS----SPLAWIRLTTVPLLC 207
           P D K+   + HG  SLV + G+ PV S +S    S +   R+ ++PL C
Sbjct: 139 PVDSKLHSGYAHGLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSC 188

>THII_BACCR (Q817B1) Probable thiamine biosynthesis protein thiI|
          Length = 404

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = +1

Query: 19  YYYTRINLNITGVYGTSSTTANKEPKERVIDQSIVVVVCAIQLRIQLVPLAAVDAKISSK 198
           Y   +  +++  V+  S    ++  K++VID +  +     ++ + LVP   V   I+ +
Sbjct: 196 YLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKE 255

Query: 199 IYIHSNGTVVNRIQARGEER 258
           I    + TV+ R+  R  ER
Sbjct: 256 IPSSYSMTVMRRMMMRITER 275

>THII_BACAN (Q81KU0) Probable thiamine biosynthesis protein thiI|
          Length = 403

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = +1

Query: 19  YYYTRINLNITGVYGTSSTTANKEPKERVIDQSIVVVVCAIQLRIQLVPLAAVDAKISSK 198
           Y   +  +++  V+  S    ++  K++VID +  +     ++ + LVP   V   I+ +
Sbjct: 195 YLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKE 254

Query: 199 IYIHSNGTVVNRIQARGEER 258
           I    + TV+ R+  R  ER
Sbjct: 255 IPSSYSMTVMRRMMMRITER 274


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,977,396
Number of Sequences: 219361
Number of extensions: 810300
Number of successful extensions: 2074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2074
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)