ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474419.1| Oryza sativa (japonica cultivar-group), predic... 98 3e-17
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AK104363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
4dbj|AK070446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
5emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 98 3e-17
6emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 98 3e-17
7gb|AF039532.1|AF039532 Oryza sativa harpin induced gene 1 homolo... 90 8e-15
8gb|AY105074.1| Zea mays PCO087822 mRNA sequence 70 7e-09
9ref|XM_609881.2| PREDICTED: Bos taurus transient receptor potent... 44 0.40
10ref|XM_878752.1| PREDICTED: Bos taurus transient receptor potent... 44 0.40
11ref|XM_866589.1| PREDICTED: Bos taurus transient receptor potent... 44 0.40
12ref|XM_878689.1| PREDICTED: Bos taurus transient receptor potent... 44 0.40
13emb|AL049792.11|HSJ305B16 Human DNA sequence from clone RP1-305B... 44 0.40
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
16emb|AL731757.6|CNS08C86 Oryza sativa chromosome 12, . Partial se... 42 1.6
17ref|NM_184524.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
18ref|XM_630731.1| Dictyostelium discoideum hypothetical protein (... 40 6.3
19ref|XM_474268.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
20gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
21gb|BC067003.1| Mus musculus transient receptor potential cation ... 40 6.3
22ref|NM_005194.2| Homo sapiens CCAAT/enhancer binding protein (C/... 40 6.3
23gb|BC021931.1| Homo sapiens CCAAT/enhancer binding protein (C/EB... 40 6.3
24gb|BC007538.1| Homo sapiens CCAAT/enhancer binding protein (C/EB... 40 6.3
25gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome... 40 6.3
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
27gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, co... 40 6.3
28ref|XM_001001606.1| PREDICTED: Mus musculus hypothetical protein... 40 6.3
29ref|XM_541002.2| PREDICTED: Canis familiaris similar to Tyrosine... 40 6.3
30gb|BC005132.2| Homo sapiens CCAAT/enhancer binding protein (C/EB... 40 6.3
31ref|XM_850164.1| PREDICTED: Canis familiaris similar to Myristoy... 40 6.3
32emb|AL161937.13| Human DNA sequence from clone RP11-112L6 on chr... 40 6.3
33emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chrom... 40 6.3
34ref|XM_965208.1| PREDICTED: Tribolium castaneum similar to CG854... 40 6.3
35gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.3
36emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
37emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 i... 40 6.3
38gb|BC082318.1| Mus musculus transient receptor potential cation ... 40 6.3
39gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cance... 40 6.3
40emb|BX927140.10| Zebrafish DNA sequence from clone CH211-288B23 ... 40 6.3
41emb|CR618754.1| full-length cDNA clone CS0DE008YN19 of Placenta ... 40 6.3
42emb|CR617287.1| full-length cDNA clone CS0DI077YG21 of Placenta ... 40 6.3
43emb|CR614073.1| full-length cDNA clone CS0DE009YH16 of Placenta ... 40 6.3
44emb|CR611012.1| full-length cDNA clone CS0DI028YM05 of Placenta ... 40 6.3
45emb|CR606949.1| full-length cDNA clone CS0DE003YP24 of Placenta ... 40 6.3
46emb|CR596985.1| full-length cDNA clone CS0DN002YA05 of Adult bra... 40 6.3
47emb|CR595646.1| full-length cDNA clone CS0DL005YM05 of B cells (... 40 6.3
48gb|AC097657.3| Homo sapiens BAC clone RP11-362J18 from 4, comple... 40 6.3
49dbj|AK040538.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 6.3
50dbj|AK041300.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 6.3
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
52dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
53gb|AC009506.5| Homo sapiens BAC clone RP11-542H1 from 2, complet... 40 6.3
54gb|AF230802.1|AF230802 Mus musculus transient receptor potential... 40 6.3
55gb|AY193834.1| Homo sapiens CCAAT/enhancer binding protein (C/EB... 40 6.3
56dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
57dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
58dbj|AK120073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
59dbj|AK100366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
60emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 ... 40 6.3
61gb|AF065607.1|MMFGF8S1 Mus musculus fibroblast growth factor-8 (... 40 6.3
62emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
63gb|AF111108.1|AF111108 Mus musculus transient receptor potential... 40 6.3
64gb|AY465411.1| Mus musculus transient receptor potential cation ... 40 6.3
65dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
66emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.3
67gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.3
68gb|AC003101.1|AC003101 Homo sapiens chromosome 17, clone HRPC41C... 40 6.3
69ref|NM_011644.1| Mus musculus transient receptor potential catio... 40 6.3
70gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, comple... 40 6.3
71dbj|AB051107.1| Oryza sativa RIP1 mRNA for ribosome inactivating... 40 6.3 
>ref|XM_474419.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 618

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                       
Query: 388 gggcagctgatcctggccctgggcccgggcaccttgaacgcccacaccttgacgcggagc 447
           |||||||||||| ||||| |||| ||||| |||||||| ||||| |||||||| | ||||
Sbjct: 548 gggcagctgatcttggccttgggtccgggaaccttgaaggcccagaccttgaccctgagc 489

                                
Query: 448 ttggcgttgagcttgacctcg 468
           |||||||||||||||||||||
Sbjct: 488 ttggcgttgagcttgacctcg 468
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Plus

                                                                            
Query: 316      aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
                |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 35036536 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 35036595

                                                                            
Query: 376      gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
                |||| || ||  |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct: 35036596 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 35036655

                                                 
Query: 436      ttgacgcggagcttggcgttgagcttgacctcg 468
                ||||| | |||||||||||||||||||||||||
Sbjct: 35036656 ttgaccctgagcttggcgttgagcttgacctcg 35036688



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 351      ggcgggggcggcgccgccgg 370
                ||||||||||||||||||||
Sbjct: 34117433 ggcgggggcggcgccgccgg 34117452
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>dbj|AK104363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C10, full
           insert sequence
          Length = 1076

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Minus

                                                                       
Query: 316 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
           |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 746 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 687

                                                                       
Query: 376 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
           |||| || ||  |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct: 686 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 627

                                            
Query: 436 ttgacgcggagcttggcgttgagcttgacctcg 468
           ||||| | |||||||||||||||||||||||||
Sbjct: 626 ttgaccctgagcttggcgttgagcttgacctcg 594
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>dbj|AK070446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G10, full
           insert sequence
          Length = 1128

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Minus

                                                                       
Query: 316 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
           |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 749 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 690

                                                                       
Query: 376 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
           |||| || ||  |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct: 689 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 630

                                            
Query: 436 ttgacgcggagcttggcgttgagcttgacctcg 468
           ||||| | |||||||||||||||||||||||||
Sbjct: 629 ttgaccctgagcttggcgttgagcttgacctcg 597
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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Plus

                                                                         
Query: 316   aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
             |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 68254 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 68313

                                                                         
Query: 376   gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
             |||| || ||  |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct: 68314 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 68373

                                              
Query: 436   ttgacgcggagcttggcgttgagcttgacctcg 468
             ||||| | |||||||||||||||||||||||||
Sbjct: 68374 ttgaccctgagcttggcgttgagcttgacctcg 68406
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Plus

                                                                         
Query: 316   aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
             |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 95583 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 95642

                                                                         
Query: 376   gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
             |||| || ||  |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct: 95643 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 95702

                                              
Query: 436   ttgacgcggagcttggcgttgagcttgacctcg 468
             ||||| | |||||||||||||||||||||||||
Sbjct: 95703 ttgaccctgagcttggcgttgagcttgacctcg 95735
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>gb|AF039532.1|AF039532 Oryza sativa harpin induced gene 1 homolog (Hin1) mRNA, complete
           cds
          Length = 1089

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 126/153 (82%)
 Strand = Plus / Minus

                                                                       
Query: 316 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 375
           |||||||||||||| |||||||| ||| | | ||| |||||||||  |  | |||  || 
Sbjct: 732 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 673

                                                                       
Query: 376 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 435
           |||| || ||  |||||||||||| ||| | |||| ||||| |||||||| ||||| |||
Sbjct: 672 gggacggtgatggggcagctgatcttgggcttgggtccgggaaccttgaaggcccagacc 613

                                            
Query: 436 ttgacgcggagcttggcgttgagcttgacctcg 468
           ||||| | |||||||||||||||||||||||||
Sbjct: 612 ttgaccctgagcttggcgttgagcttgacctcg 580
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>gb|AY105074.1| Zea mays PCO087822 mRNA sequence
          Length = 1219

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                       
Query: 360 ggcgccgccgggggcggggatggagagcgggcagctgatcctggccctgggcccgggcac 419
           |||| ||||||| ||||||| |||||||  |||| ||| | | ||| |||||||| | ||
Sbjct: 865 ggcggcgccgggtgcggggacggagagcttgcaggtgaccttagccttgggcccgcggac 806

                                                  
Query: 420 cttgaacgcccacaccttgacgcggagcttggcgttgag 458
           |||||||||||| ||||| || | |||||||||||||||
Sbjct: 805 cttgaacgcccagaccttcaccctgagcttggcgttgag 767
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>ref|XM_609881.2| PREDICTED: Bos taurus transient receptor potential channel 2,
           transcript variant 1 (TRPC2), mRNA
          Length = 4062

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 275 cggatccccaaacgagcaccaaggaa 300
           ||||||||||||||| ||||||||||
Sbjct: 869 cggatccccaaacgaccaccaaggaa 894
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>ref|XM_878752.1| PREDICTED: Bos taurus transient receptor potential channel 2,
            transcript variant 4 (TRPC2), mRNA
          Length = 2362

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 275  cggatccccaaacgagcaccaaggaa 300
            ||||||||||||||| ||||||||||
Sbjct: 976  cggatccccaaacgaccaccaaggaa 1001
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>ref|XM_866589.1| PREDICTED: Bos taurus transient receptor potential channel 2,
            transcript variant 2 (TRPC2), mRNA
          Length = 4169

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 275  cggatccccaaacgagcaccaaggaa 300
            ||||||||||||||| ||||||||||
Sbjct: 976  cggatccccaaacgaccaccaaggaa 1001
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>ref|XM_878689.1| PREDICTED: Bos taurus transient receptor potential channel 2,
            transcript variant 3 (TRPC2), mRNA
          Length = 1411

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 275  cggatccccaaacgagcaccaaggaa 300
            ||||||||||||||| ||||||||||
Sbjct: 976  cggatccccaaacgaccaccaaggaa 1001
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>emb|AL049792.11|HSJ305B16 Human DNA sequence from clone RP1-305B16 on chromosome Xq25-26.2
             Contains a novel gene, a novel pseudogene and the 3' end
             of the RAP2C gene for RAP2C (member of RAS oncogene
             family), complete sequence
          Length = 109524

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 31    agaatcaatctcaatataactg 52
             ||||||||||||||||||||||
Sbjct: 85102 agaatcaatctcaatataactg 85081
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 352      gcgggggcggcgccgccgggggcgg 376
                ||||||||||||||||||| |||||
Sbjct: 22044522 gcgggggcggcgccgccggcggcgg 22044498



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 357      ggcggcgccgccgggggcgg 376
                ||||||||||||||||||||
Sbjct: 25756638 ggcggcgccgccgggggcgg 25756619
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 352      gcgggggcggcgccgccgggggcgg 376
                ||||||||||||||||||| |||||
Sbjct: 21972867 gcgggggcggcgccgccggcggcgg 21972843



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 357      ggcggcgccgccgggggcgg 376
                ||||||||||||||||||||
Sbjct: 25684814 ggcggcgccgccgggggcgg 25684795
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>emb|AL731757.6|CNS08C86 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1281_G01 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 69648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 352   gcgggggcggcgccgccgggggcgg 376
             ||||||||||||||||||| |||||
Sbjct: 14724 gcgggggcggcgccgccggcggcgg 14700
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>ref|NM_184524.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 ggcggcgccgccgggggcgg 376
           ||||||||||||||||||||
Sbjct: 540 ggcggcgccgccgggggcgg 521
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>ref|XM_630731.1| Dictyostelium discoideum hypothetical protein (DDB0188772), partial
           mRNA
          Length = 3828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 atcgatagtagtagtagtat 133
           ||||||||||||||||||||
Sbjct: 231 atcgatagtagtagtagtat 212
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>ref|XM_474268.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 ggcgggggcggcgccgccgg 370
           ||||||||||||||||||||
Sbjct: 51  ggcgggggcggcgccgccgg 70
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>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map
              near C10769, complete sequence
          Length = 194856

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    tccaactagtaccactagca 171
              ||||||||||||||||||||
Sbjct: 133594 tccaactagtaccactagca 133613
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>gb|BC067003.1| Mus musculus transient receptor potential cation channel, subfamily
            C, member 2, mRNA (cDNA clone IMAGE:6402564), complete
            cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 277  gatccccaaacgagcaccaaggaa 300
            |||||||| |||||||||||||||
Sbjct: 1022 gatccccagacgagcaccaaggaa 1045
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>ref|NM_005194.2| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB),
            mRNA
          Length = 1837

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1325 cggcgccgccgggggcgggg 1306
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>gb|BC021931.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA (cDNA
            clone MGC:32080 IMAGE:4870789), complete cds
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1325 cggcgccgccgggggcgggg 1306
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>gb|BC007538.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA (cDNA
            clone MGC:15409 IMAGE:3028673), complete cds
          Length = 1832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1310 cggcgccgccgggggcgggg 1291
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>gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome 19, complete sequence
          Length = 208584

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 351   ggcgggggcggcgccgccgggggcgggg 378
             ||||||||||| || |||||||||||||
Sbjct: 30520 ggcgggggcggggcggccgggggcgggg 30547
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 152      tccaactagtaccactagca 171
                ||||||||||||||||||||
Sbjct: 29005697 tccaactagtaccactagca 29005678
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>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    tagtagtagtagtatgtgca 138
              ||||||||||||||||||||
Sbjct: 120926 tagtagtagtagtatgtgca 120907
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>ref|XM_001001606.1| PREDICTED: Mus musculus hypothetical protein LOC668465 (LOC668465),
           mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 351 ggcgggggcggcgccgccgggggcgggg 378
           ||||||||||| || |||||||||||||
Sbjct: 194 ggcgggggcggggcggccgggggcgggg 167
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>ref|XM_541002.2| PREDICTED: Canis familiaris similar to Tyrosine-protein
           phosphatase, non-receptor type 4 (Protein-tyrosine
           phosphatase MEG1) (PTPase-MEG1) (MEG), transcript
           variant 1 (LOC483882), mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cggcgccgccgggggcgggg 378
           ||||||||||||||||||||
Sbjct: 502 cggcgccgccgggggcgggg 483
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>gb|BC005132.2| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA
           (cDNA clone IMAGE:3836438), partial cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cggcgccgccgggggcgggg 378
           ||||||||||||||||||||
Sbjct: 508 cggcgccgccgggggcgggg 489
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>ref|XM_850164.1| PREDICTED: Canis familiaris similar to Myristoylated alanine-rich
           C-kinase substrate (MARCKS) (Protein kinase C substrate
           80 kDa protein) (LOC612436), mRNA
          Length = 2893

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 351 ggcgggggcggcgccgccgggggcgggg 378
           ||||||||||||| || |||||||||||
Sbjct: 708 ggcgggggcggcggcggcgggggcgggg 681
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>emb|AL161937.13| Human DNA sequence from clone RP11-112L6 on chromosome 20 Contains the
             CEBPB (CCAAT/enhancer binding protein (C/EBP), beta))
             gene, a putative novel gene, ESTs, STSs, GSSs and two CpG
             islands.n, complete sequence
          Length = 93399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   cggcgccgccgggggcgggg 378
             ||||||||||||||||||||
Sbjct: 36768 cggcgccgccgggggcgggg 36749
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>emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chromosome Xq22.2-23
             Contains a thyroid autoantigen 70kDa (Ku antigen) (G22P1)
             pseudogene, complete sequence
          Length = 133402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   agcaagatctacatacatag 212
             ||||||||||||||||||||
Sbjct: 52900 agcaagatctacatacatag 52881
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>ref|XM_965208.1| PREDICTED: Tribolium castaneum similar to CG8541-PA (LOC658856),
           mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 tgaaggcgggggcggcgccg 366
           ||||||||||||||||||||
Sbjct: 379 tgaaggcgggggcggcgccg 360
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 328     accttgcagtccgtgggttt 347
               ||||||||||||||||||||
Sbjct: 4031899 accttgcagtccgtgggttt 4031880
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ggcgggggcggcgccgccgg 370
             ||||||||||||||||||||
Sbjct: 28815 ggcgggggcggcgccgccgg 28834
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>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17,
              complete sequence
          Length = 146938

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    tagtagtagtagtatgtgca 138
              ||||||||||||||||||||
Sbjct: 121210 tagtagtagtagtatgtgca 121229
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>gb|BC082318.1| Mus musculus transient receptor potential cation channel, subfamily
           C, member 2, mRNA (cDNA clone IMAGE:6419565), complete
           cds
          Length = 2832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 784 gatccccagacgagcaccaaggaa 807
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>gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 143620

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     aatagtactactactatactagaa 34
              ||||||||||||||| ||||||||
Sbjct: 122653 aatagtactactactgtactagaa 122676
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>emb|BX927140.10| Zebrafish DNA sequence from clone CH211-288B23 in linkage group 22,
             complete sequence
          Length = 125248

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   atagtagtagtagtatgtgc 137
             ||||||||||||||||||||
Sbjct: 30927 atagtagtagtagtatgtgc 30946
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>emb|CR618754.1| full-length cDNA clone CS0DE008YN19 of Placenta of Homo sapiens
            (human)
          Length = 1666

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1325 cggcgccgccgggggcgggg 1306
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>emb|CR617287.1| full-length cDNA clone CS0DI077YG21 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1199

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cggcgccgccgggggcgggg 378
           ||||||||||||||||||||
Sbjct: 727 cggcgccgccgggggcgggg 708
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>emb|CR614073.1| full-length cDNA clone CS0DE009YH16 of Placenta of Homo sapiens
           (human)
          Length = 838

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cggcgccgccgggggcgggg 378
           ||||||||||||||||||||
Sbjct: 339 cggcgccgccgggggcgggg 320
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>emb|CR611012.1| full-length cDNA clone CS0DI028YM05 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1791

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1321 cggcgccgccgggggcgggg 1302
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>emb|CR606949.1| full-length cDNA clone CS0DE003YP24 of Placenta of Homo sapiens
            (human)
          Length = 1788

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1315 cggcgccgccgggggcgggg 1296
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>emb|CR596985.1| full-length cDNA clone CS0DN002YA05 of Adult brain of Homo sapiens
            (human)
          Length = 1809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 1344 cggcgccgccgggggcgggg 1325
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>emb|CR595646.1| full-length cDNA clone CS0DL005YM05 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 935

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cggcgccgccgggggcgggg 378
           ||||||||||||||||||||
Sbjct: 554 cggcgccgccgggggcgggg 535
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>gb|AC097657.3| Homo sapiens BAC clone RP11-362J18 from 4, complete sequence
          Length = 159934

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atagtactactactatacta 31
              ||||||||||||||||||||
Sbjct: 143861 atagtactactactatacta 143880
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>dbj|AK040538.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430105L04 product:transient receptor
           protein 2, full insert sequence
          Length = 4847

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 788 gatccccagacgagcaccaaggaa 811
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>dbj|AK041300.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530098A22 product:transient
           receptor protein 2, full insert sequence
          Length = 2299

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 871 gatccccagacgagcaccaaggaa 894
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 152      tccaactagtaccactagca 171
                ||||||||||||||||||||
Sbjct: 29097119 tccaactagtaccactagca 29097100
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     ggcggcgccgccgggggcgg 376
               ||||||||||||||||||||
Sbjct: 3444758 ggcggcgccgccgggggcgg 3444739
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>gb|AC009506.5| Homo sapiens BAC clone RP11-542H1 from 2, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tagtagtagtagtatgtgca 138
             ||||||||||||||||||||
Sbjct: 48117 tagtagtagtagtatgtgca 48098
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>gb|AF230802.1|AF230802 Mus musculus transient receptor potential channel 2-alpha mRNA,
           complete cds
          Length = 3805

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 219 gatccccagacgagcaccaaggaa 242
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>gb|AY193834.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB)
            gene, complete cds
          Length = 5086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cggcgccgccgggggcgggg 378
            ||||||||||||||||||||
Sbjct: 2332 cggcgccgccgggggcgggg 2313
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ggcggcgccgccgggggcgg 376
              ||||||||||||||||||||
Sbjct: 123128 ggcggcgccgccgggggcgg 123109
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   ggcggcgccgccgggggcgg 376
             ||||||||||||||||||||
Sbjct: 12826 ggcggcgccgccgggggcgg 12807
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>dbj|AK120073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013006P20, full
           insert sequence
          Length = 1270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 ggcggcgccgccgggggcgg 376
           ||||||||||||||||||||
Sbjct: 540 ggcggcgccgccgggggcgg 521
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>dbj|AK100366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083O16, full
           insert sequence
          Length = 2324

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 ggcgggggcggcgccgccgg 370
           ||||||||||||||||||||
Sbjct: 195 ggcgggggcggcgccgccgg 214
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>emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 in linkage group 18,
              complete sequence
          Length = 178361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      actggtaaaatagtactactacta 26
              |||||||||||| |||||||||||
Sbjct: 126779 actggtaaaatactactactacta 126802
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>gb|AF065607.1|MMFGF8S1 Mus musculus fibroblast growth factor-8 (Fgf8) gene, promoter region;
            5'UTR, complete sequence; and partial cds
          Length = 1462

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 351  ggcgggggcggcgccgccgggggcgggg 378
            ||||||||||| || |||||||||||||
Sbjct: 1069 ggcgggggcggggcggccgggggcgggg 1042
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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ggcgggggcggcgccgccgg 370
             ||||||||||||||||||||
Sbjct: 34490 ggcgggggcggcgccgccgg 34509
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>gb|AF111108.1|AF111108 Mus musculus transient receptor potential 2 (Trp2) mRNA,
           alternatively spliced, complete cds
          Length = 3608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 328 gatccccagacgagcaccaaggaa 351
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>gb|AY465411.1| Mus musculus transient receptor potential cation channel subfamily
           C member 2 long channel splice form (Trpc2) mRNA,
           complete cds; alternatively spliced
          Length = 3401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 639 gatccccagacgagcaccaaggaa 662
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   ggcggcgccgccgggggcgg 376
             ||||||||||||||||||||
Sbjct: 31518 ggcggcgccgccgggggcgg 31499
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ggcggcgccgccgggggcgg 376
              ||||||||||||||||||||
Sbjct: 123876 ggcggcgccgccgggggcgg 123857
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 396     gatcctggccctgggcccgg 415
               ||||||||||||||||||||
Sbjct: 1795190 gatcctggccctgggcccgg 1795171
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>gb|AC003101.1|AC003101 Homo sapiens chromosome 17, clone HRPC41C23, complete sequence
          Length = 208396

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 356    gggcggcgccgccgggggcgggga 379
              ||||||||| ||||||||||||||
Sbjct: 139617 gggcggcgcggccgggggcgggga 139594
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>ref|NM_011644.1| Mus musculus transient receptor potential cation channel, subfamily
           C, member 2 (Trpc2), mRNA
          Length = 3608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gatccccaaacgagcaccaaggaa 300
           |||||||| |||||||||||||||
Sbjct: 328 gatccccagacgagcaccaaggaa 351
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>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence
          Length = 185283

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 351    ggcgggggcggcgccgccgggggcgggg 378
              ||||||||||| || |||||||||||||
Sbjct: 117197 ggcgggggcggggcggccgggggcgggg 117224
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>dbj|AB051107.1| Oryza sativa RIP1 mRNA for ribosome inactivating protein 1,
           complete cds
          Length = 1329

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 ggcggcgccgccgggggcgg 376
           ||||||||||||||||||||
Sbjct: 475 ggcggcgccgccgggggcgg 456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,968,097
Number of Sequences: 3902068
Number of extensions: 2968097
Number of successful extensions: 125240
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124461
Number of HSP's gapped (non-prelim): 779
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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