ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CISH_HUMAN (Q9NSE2) Cytokine-inducible SH2-containing protein (C... 28 8.4
2CISH_MOUSE (Q62225) Cytokine-inducible SH2-containing protein (C... 28 8.4
3CISH_RAT (O70512) Cytokine-inducible SH2-containing protein (CIS... 28 8.4

>CISH_HUMAN (Q9NSE2) Cytokine-inducible SH2-containing protein (CIS) (CIS-1)|
           (Suppressor of cytokine signaling) (SOCS) (Protein G18)
          Length = 258

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 120 DSLHPSQPASXPAKTTRPRYHXRIGYSTSSY 28
           DS HPS   +   KTTR   + RI Y+ SS+
Sbjct: 108 DSTHPSYLFTLSVKTTRGPTNVRIEYADSSF 138



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>CISH_MOUSE (Q62225) Cytokine-inducible SH2-containing protein (CIS) (CIS-1)|
           (Suppressor of cytokine signaling) (SOCS)
          Length = 257

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 120 DSLHPSQPASXPAKTTRPRYHXRIGYSTSSY 28
           DS HPS   +   KTTR   + RI Y+ SS+
Sbjct: 108 DSTHPSYLFTLSVKTTRGPTNVRIEYADSSF 138



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>CISH_RAT (O70512) Cytokine-inducible SH2-containing protein (CIS) (CIS-1)|
           (Suppressor of cytokine signaling) (SOCS) (Fragment)
          Length = 256

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 120 DSLHPSQPASXPAKTTRPRYHXRIGYSTSSY 28
           DS HPS   +   KTTR   + RI Y+ SS+
Sbjct: 107 DSTHPSYLFTLSVKTTRGPTNVRIEYADSSF 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,989,256
Number of Sequences: 219361
Number of extensions: 342506
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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