ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ549118.1|HVU549118 Hordeum vulgare subsp. vulgare mRNA for... 383 e-103
2emb|AJ549119.1|HVU549119 Hordeum vulgare subsp. vulgare mRNA for... 60 3e-06
3gb|AY108632.1| Zea mays PCO084337 mRNA sequence 46 0.046
4ref|NM_197361.1| Oryza sativa (japonica cultivar-group) hypothet... 40 2.8
5gb|AC156577.3| Ornithorhynchus anatinus BAC clone OABb-470C16 fr... 40 2.8
6gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 40 2.8
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8

>emb|AJ549118.1|HVU549118 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 2 (fp2
           gene)
          Length = 668

 Score =  383 bits (193), Expect = e-103
 Identities = 213/222 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgtacacgcgtggatttactattacgtagctggatgtagaatagcctattctgngatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 atcgtacacgcgtggatttactattacgtagctggatgtagaatagcctattctgtgatg 541

                                                                       
Query: 61  gtatctaggccgcgtggtctttgctgggnggctggccggctggctaggatggagactgtc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 540 gtatctaggccgcgtggtctttgctgggtggctggccggctggctaggatggagactgtc 481

                                                                       
Query: 121 aagaccgtaggtatnatcagttcatcacatgatggcgcaggagttcacgtcctcgtnntt 180
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  | 
Sbjct: 480 aagaccgtaggtatcatcagttcatcacatgatggtgcaggagttcacgtcctcgtcgtc 421

                                                     
Query: 181 gaacatgttcatgtaccggacctccggcgcccntggatnggc 222
           |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 420 gaacatgttcatgtaccggacctccggcgcccctggatcggc 379



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>emb|AJ549119.1|HVU549119 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 3 (fp3
           gene)
          Length = 650

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 144 atcacatgatggcgcaggagttcacgtcctcgtnnttgaacatgttcatgta 195
           ||||||||| || ||||| ||| ||||||||||  |||||||||||||||||
Sbjct: 457 atcacatgacggtgcaggcgttgacgtcctcgtcgttgaacatgttcatgta 406



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>gb|AY108632.1| Zea mays PCO084337 mRNA sequence
          Length = 798

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 143 catcacatgatggcgcaggagttcacgtcctcgtnnttgaacatgttcatgtaccggacc 202
           ||||||||||||| ||||| ||| |||| |||||   ||||||||  |||||||  ||||
Sbjct: 651 catcacatgatggtgcaggcgttgacgttctcgtcgctgaacatggacatgtacttgacc 592

                
Query: 203 tccgg 207
           |||||
Sbjct: 591 tccgg 587



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>ref|NM_197361.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0076F20.23), mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 tgatggcgcaggagttcacg 169
           ||||||||||||||||||||
Sbjct: 542 tgatggcgcaggagttcacg 561



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>gb|AC156577.3| Ornithorhynchus anatinus BAC clone OABb-470C16 from chromosome unknown,
              complete sequence
          Length = 153725

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 83     gctgggnggctggccggctggct 105
              |||||| ||||||||||||||||
Sbjct: 106545 gctgggtggctggccggctggct 106523



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 83    gctgggnggctggccggctggct 105
             |||||| ||||||||||||||||
Sbjct: 29707 gctgggtggctggccggctggct 29685



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 83    gctgggnggctggccggctggct 105
             |||||| ||||||||||||||||
Sbjct: 27122 gctgggtggctggccggctggct 27100



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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tgatggcgcaggagttcacg 169
             ||||||||||||||||||||
Sbjct: 85296 tgatggcgcaggagttcacg 85315



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 150      tgatggcgcaggagttcacg 169
                ||||||||||||||||||||
Sbjct: 19457430 tgatggcgcaggagttcacg 19457449



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 150      tgatggcgcaggagttcacg 169
                ||||||||||||||||||||
Sbjct: 19468706 tgatggcgcaggagttcacg 19468725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 863,060
Number of Sequences: 3902068
Number of extensions: 863060
Number of successful extensions: 53593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53569
Number of HSP's gapped (non-prelim): 24
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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