| Clone Name | rbaal16c21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ549118.1|HVU549118 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 2 (fp2 gene) Length = 668 Score = 383 bits (193), Expect = e-103 Identities = 213/222 (95%) Strand = Plus / Minus Query: 1 atcgtacacgcgtggatttactattacgtagctggatgtagaatagcctattctgngatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 600 atcgtacacgcgtggatttactattacgtagctggatgtagaatagcctattctgtgatg 541 Query: 61 gtatctaggccgcgtggtctttgctgggnggctggccggctggctaggatggagactgtc 120 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 540 gtatctaggccgcgtggtctttgctgggtggctggccggctggctaggatggagactgtc 481 Query: 121 aagaccgtaggtatnatcagttcatcacatgatggcgcaggagttcacgtcctcgtnntt 180 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct: 480 aagaccgtaggtatcatcagttcatcacatgatggtgcaggagttcacgtcctcgtcgtc 421 Query: 181 gaacatgttcatgtaccggacctccggcgcccntggatnggc 222 |||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 420 gaacatgttcatgtaccggacctccggcgcccctggatcggc 379
>emb|AJ549119.1|HVU549119 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 3 (fp3 gene) Length = 650 Score = 60.0 bits (30), Expect = 3e-06 Identities = 46/52 (88%) Strand = Plus / Minus Query: 144 atcacatgatggcgcaggagttcacgtcctcgtnnttgaacatgttcatgta 195 ||||||||| || ||||| ||| |||||||||| ||||||||||||||||| Sbjct: 457 atcacatgacggtgcaggcgttgacgtcctcgtcgttgaacatgttcatgta 406
>gb|AY108632.1| Zea mays PCO084337 mRNA sequence Length = 798 Score = 46.1 bits (23), Expect = 0.046 Identities = 54/65 (83%) Strand = Plus / Minus Query: 143 catcacatgatggcgcaggagttcacgtcctcgtnnttgaacatgttcatgtaccggacc 202 ||||||||||||| ||||| ||| |||| ||||| |||||||| ||||||| |||| Sbjct: 651 catcacatgatggtgcaggcgttgacgttctcgtcgctgaacatggacatgtacttgacc 592 Query: 203 tccgg 207 ||||| Sbjct: 591 tccgg 587
>ref|NM_197361.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.23), mRNA Length = 597 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgatggcgcaggagttcacg 169 |||||||||||||||||||| Sbjct: 542 tgatggcgcaggagttcacg 561
>gb|AC156577.3| Ornithorhynchus anatinus BAC clone OABb-470C16 from chromosome unknown, complete sequence Length = 153725 Score = 40.1 bits (20), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gctgggnggctggccggctggct 105 |||||| |||||||||||||||| Sbjct: 106545 gctgggtggctggccggctggct 106523 Score = 40.1 bits (20), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gctgggnggctggccggctggct 105 |||||| |||||||||||||||| Sbjct: 29707 gctgggtggctggccggctggct 29685 Score = 40.1 bits (20), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gctgggnggctggccggctggct 105 |||||| |||||||||||||||| Sbjct: 27122 gctgggtggctggccggctggct 27100
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgatggcgcaggagttcacg 169 |||||||||||||||||||| Sbjct: 85296 tgatggcgcaggagttcacg 85315
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgatggcgcaggagttcacg 169 |||||||||||||||||||| Sbjct: 19457430 tgatggcgcaggagttcacg 19457449
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgatggcgcaggagttcacg 169 |||||||||||||||||||| Sbjct: 19468706 tgatggcgcaggagttcacg 19468725 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 863,060 Number of Sequences: 3902068 Number of extensions: 863060 Number of successful extensions: 53593 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53569 Number of HSP's gapped (non-prelim): 24 length of query: 222 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 200 effective length of database: 17,147,199,772 effective search space: 3429439954400 effective search space used: 3429439954400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)