>VSG7_TRYBR (P02898) Variant surface glycoprotein 7 precursor (VSG 7)|
           (Metacyclic variable antigen) (Fragments)
          Length = 467

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 5   VRPIAFTTSTYSSEASPLSSGAFALFFQNDSNRLSCSCSCSISNRTSRPTPSSQAEPTEA 184
           V  + FTT+   +E SPL +GA+         + +   S SISNRT     ++     EA
Sbjct: 218 VTKLTFTTAAPVAETSPLVAGAY---------KKTSKASLSISNRTEEGRVANSKAAHEA 268

Query: 185 A 187
           A
Sbjct: 269 A 269

>FLS_MATIN (O04395) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS) (Fragment)
          Length = 291

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = -3

Query: 189 CAASVGSAWEEGVGREVRLEIEQLQLQLNRLE-SFWKNNA-------KAPDDKGDASEEY 34
           CA   GS   EG GR + L+I++ +  ++++  S W  ++       K+P D  + +EEY
Sbjct: 62  CAREAGSV--EGYGRRIELDIKKRKGIVDQIYLSTWPPSSVNYRYWPKSPPDYREVNEEY 119

Query: 33  VEVVKAM 13
              VK +
Sbjct: 120 ARHVKTL 126

>YPHB_ECOLI (P76584) Hypothetical protein yphB|
          Length = 290

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 203 VARDSAPPPLVPLGRRVSAERFGWR 129
           VA D++  PLVP   RVS  RF W+
Sbjct: 41  VATDASCFPLVPFANRVSGNRFVWQ 65

>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1291

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 159 EGVGREVRLEIEQLQLQLNRLESFWK--NNAKAPDDKGDASEEYVEVVKAMGRTF 1
           E   RE+R   ++ Q +++RLE  W    N K  D +GD  + Y E+    G+ F
Sbjct: 199 EAAEREIRQIRDRAQREIDRLEEVWNRFKNLKVQDLEGD-EQLYREMRDRFGKYF 252

>YIS7_YEAST (P40566) Hypothetical 87.0 kDa protein in PAN1-PRI1 intergenic|
           region
          Length = 764

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 17  AFTTSTYSSEASPLSSGAFALFFQNDSNRLSCSCS 121
           A+ T+ YSS+ + L +  FAL   N S  L C CS
Sbjct: 527 AYITNDYSSQTAALDALGFALEGSNLSYTLWCYCS 561

>KCNH6_RAT (O54853) Potassium voltage-gated channel subfamily H member 6|
           (Voltage-gated potassium channel subunit Kv11.2)
           (Ether-a-go-go-related gene potassium channel 2)
           (Ether-a-go-go-related protein 2) (Eag-related protein
           2)
          Length = 950

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 147 REVRLEIEQLQLQLNRLES 91
           RE+  ++EQLQ Q+NRLES
Sbjct: 782 RELGFKLEQLQAQMNRLES 800

>TRXR_CAEEL (Q17745) Thioredoxin reductase (EC 1.8.1.9) (TR-Se) (TRR)|
          Length = 667

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 174 GSAWEEGVGREVRLEIEQLQLQLNRLESFWKNNAKAPDDKGDASEEYVEVVKAMGR 7
           G  +E GV   +    E+   +  +   FW    +   +  + SEEY  ++ A+GR
Sbjct: 405 GMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGR 460

>PASK_HUMAN (Q96RG2) PAS domain-containing serine/threonine-protein kinase (EC|
           2.7.11.1) (PAS-kinase) (PASKIN) (hPASK)
          Length = 1323

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 77  LFFQNDSNRLSCSCSCSISNRTSRPTPSSQA 169
           LFF + +++ S +CSC+ S    R TPSS A
Sbjct: 746 LFFSDQTDQTSSNCSCATSE--LRETPSSLA 774

>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I|
          Length = 536

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
 Frame = +2

Query: 23  TTSTYSSEASPLSSGAFA--------LFFQNDSNRLSCSCSCSISNRTSRP-TPSSQAEP 175
           T  + SS +SPLSS +F             + S++ S S S S+++ +S   T SS A P
Sbjct: 55  TAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASP 114

Query: 176 TEAA 187
           T ++
Sbjct: 115 TSSS 118

>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
           precursor
          Length = 605

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  TTSTYSSE--ASPLSSGAFALFFQNDSNRLSCSCSCSISNRTSRPTPSSQAEPTEAAH 190
           TTST SS   ++  SS + +      S  +S S + S S  TS  +P+S + PT +++
Sbjct: 222 TTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSN 279

>SYI_SULAC (P46215) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 1050

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = -3

Query: 162  EEGVGREV--RLEIEQLQLQLNRLESFWKNNAKAPDDKGDASEEYVEVVK 19
            EEG+ R++  R++  + QL LN +  +   + +APDDK D  +++ + +K
Sbjct: 962  EEGIIRDLIRRIQFMRKQLSLN-VNEYILLSIRAPDDKVDLIKKWEQYIK 1010

>VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Contains: Vitellin|
           light chain (VL); Vitellin heavy chain (VH)]
          Length = 2148

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 26  TSTYSSEASPLSSGAFALFFQNDSNRLSCSCSCSISNRT--SRPTPSSQAEPTEAAHCP 196
           TS+YSS +S  SS + +      S+  S S S SIS+     +PTP++ +   EA   P
Sbjct: 519 TSSYSSSSSSSSSSSSSESSSYSSSSSSSSESYSISSEEYYYQPTPANFSYAPEAPFLP 577

>TCTP_HYDAT (Q94587) Translationally-controlled tumor protein homolog (TCTP)|
          Length = 184

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 78  NAKAPDDKGDASEEYVEVVKAMGRTF 1
           +A+  DD+G+AS EY  VV  + R F
Sbjct: 53  SAEGEDDEGEASTEYKPVVNTLLRAF 78

>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -3

Query: 201 RTGQCAASVGSAWEEGVGREVRLEIEQLQLQLNRLESFWKNNAKAPDD 58
           +T Q A+     W+E   + ++    + +  +  + SFWK N +   D
Sbjct: 621 KTAQLASKQSRKWQERTNKSMKDTQARAKRTMREMMSFWKRNEREERD 668

>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1612

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -3

Query: 201 RTGQCAASVGSAWEEGVGREVRLEIEQLQLQLNRLESFWKNNAKAPDD 58
           +T Q A+     W+E   + ++    + +  +  + SFWK N +   D
Sbjct: 599 KTAQLASKQSRKWQERTNKSMKDTQARAKRTMREMMSFWKRNEREERD 646


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,172,314
Number of Sequences: 219361
Number of extensions: 600343
Number of successful extensions: 2167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2165
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)