ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.008
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.008
3dbj|AK098851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.008
4dbj|AK061747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.008
5emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 i... 44 0.13
6gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosom... 42 0.51
7dbj|AK134728.1| Mus musculus adult male medulla oblongata cDNA, ... 42 0.51
8dbj|AK140433.1| Mus musculus 10 days neonate medulla oblongata c... 42 0.51
9dbj|AK045710.1| Mus musculus adult male corpora quadrigemina cDN... 42 0.51
10dbj|AK004399.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 42 0.51
11emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 i... 40 2.0
12gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 38 7.9
13gb|AC022316.18|AC022316 Homo sapiens chromosome 11 clone RP11-46... 38 7.9
14emb|BX005358.16| Zebrafish DNA sequence from clone DKEY-161F12 i... 38 7.9
15dbj|AP000764.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.9
16emb|BX470214.6| Zebrafish DNA sequence from clone DKEY-27M7 in l... 38 7.9
17gb|AC135085.3| Mus musculus BAC clone RP24-317P24 from 1, comple... 38 7.9
18emb|AL137575.1|HSM802325 Homo sapiens mRNA; cDNA DKFZp564C1964 (... 38 7.9 
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
             complete sequence
          Length = 142068

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 133   agttgcacttattcacaagccagcttcgtgcc 164
             |||| |||||||||||| ||||||||||||||
Sbjct: 35584 agttacacttattcacaggccagcttcgtgcc 35553
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 133      agttgcacttattcacaagccagcttcgtgcc 164
                |||| |||||||||||| ||||||||||||||
Sbjct: 25300980 agttacacttattcacaggccagcttcgtgcc 25300949
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>dbj|AK098851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H08, full
            insert sequence
          Length = 1630

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 133  agttgcacttattcacaagccagcttcgtgcc 164
            |||| |||||||||||| ||||||||||||||
Sbjct: 1305 agttacacttattcacaggccagcttcgtgcc 1274
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>dbj|AK061747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G02, full
            insert sequence
          Length = 1685

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 133  agttgcacttattcacaagccagcttcgtgcc 164
            |||| |||||||||||| ||||||||||||||
Sbjct: 1371 agttacacttattcacaggccagcttcgtgcc 1340
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>emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 in linkage group 1,
            complete sequence
          Length = 76732

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 118  atgatacatcaacagagttgcactta 143
            ||||| ||||||||||||||||||||
Sbjct: 3611 atgattcatcaacagagttgcactta 3586
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>gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosome 15, complete sequence
          Length = 205859

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 79     gcataagagagttgaggctatccgccaca 107
              |||| ||||||||||| ||||||||||||
Sbjct: 111523 gcatgagagagttgagtctatccgccaca 111551
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>dbj|AK134728.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330539I22 product:contactin 1,
            full insert sequence
          Length = 1740

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 79   gcataagagagttgaggctatccgccaca 107
            |||| ||||||||||| ||||||||||||
Sbjct: 1414 gcatgagagagttgagtctatccgccaca 1386
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>dbj|AK140433.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830008A22
            product:contactin 1, full insert sequence
          Length = 1628

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 79   gcataagagagttgaggctatccgccaca 107
            |||| ||||||||||| ||||||||||||
Sbjct: 1302 gcatgagagagttgagtctatccgccaca 1274
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>dbj|AK045710.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230306O09 product:contactin 1,
            full insert sequence
          Length = 3009

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 79   gcataagagagttgaggctatccgccaca 107
            |||| ||||||||||| ||||||||||||
Sbjct: 2664 gcatgagagagttgagtctatccgccaca 2636
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>dbj|AK004399.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
            enriched library, clone:1110067L24 product:contactin 1,
            full insert sequence
          Length = 1439

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 79   gcataagagagttgaggctatccgccaca 107
            |||| ||||||||||| ||||||||||||
Sbjct: 1300 gcatgagagagttgagtctatccgccaca 1272
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>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19,
            complete sequence
          Length = 147275

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   ctatccgccacacacacaat 115
            ||||||||||||||||||||
Sbjct: 3255 ctatccgccacacacacaat 3236
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>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 139    acttattcacaagccagct 157
              |||||||||||||||||||
Sbjct: 125485 acttattcacaagccagct 125503
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>gb|AC022316.18|AC022316 Homo sapiens chromosome 11 clone RP11-46D24, complete sequence
          Length = 180973

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   caacagagttgcacttatt 145
             |||||||||||||||||||
Sbjct: 21302 caacagagttgcacttatt 21320
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>emb|BX005358.16| Zebrafish DNA sequence from clone DKEY-161F12 in linkage group 20,
              complete sequence
          Length = 181198

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    cacacacacaatgcatgat 122
              |||||||||||||||||||
Sbjct: 174077 cacacacacaatgcatgat 174095
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>dbj|AP000764.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811N23, complete
              sequence
          Length = 216203

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 127    caacagagttgcacttatt 145
              |||||||||||||||||||
Sbjct: 187924 caacagagttgcacttatt 187942
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>emb|BX470214.6| Zebrafish DNA sequence from clone DKEY-27M7 in linkage group 18, complete
              sequence
          Length = 234545

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 104    cacacacacaatgcatgatacat 126
              ||||||||||| |||||||||||
Sbjct: 191146 cacacacacaaggcatgatacat 191124



 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 104    cacacacacaatgcatgatacat 126
              ||||||||||| |||||||||||
Sbjct: 186460 cacacacacaaggcatgatacat 186438
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>gb|AC135085.3| Mus musculus BAC clone RP24-317P24 from 1, complete sequence
          Length = 214594

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 105   acacacacaatgcatgatacatcaaca 131
             |||||||||||||||| ||||| ||||
Sbjct: 92022 acacacacaatgcatgctacataaaca 92048
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>emb|AL137575.1|HSM802325 Homo sapiens mRNA; cDNA DKFZp564C1964 (from clone DKFZp564C1964)
          Length = 2057

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 139 acttattcacaagccagct 157
           |||||||||||||||||||
Sbjct: 901 acttattcacaagccagct 883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,545,687
Number of Sequences: 3902068
Number of extensions: 1545687
Number of successful extensions: 78200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78141
Number of HSP's gapped (non-prelim): 59
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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