ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, co... 42 2.4
2gb|DQ191684.1| Squilla empusa mitochondrion, complete genome 42 2.4
3emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in ... 42 2.4
4gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, comp... 42 2.4
5gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
6gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
7gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
8ref|XM_616959.2| PREDICTED: Bos taurus similar to roundabout 1 i... 40 9.6
9gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome... 40 9.6
10gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, compl... 40 9.6
11emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chr... 40 9.6
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
14dbj|AK105760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
15dbj|AK099541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
16gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 40 9.6
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6

>gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, complete sequence
          Length = 195598

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 617  tccactggtttcttggctggtgtgg 641
            |||||||| ||||||||||||||||
Sbjct: 2577 tccactggcttcttggctggtgtgg 2553



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>gb|DQ191684.1| Squilla empusa mitochondrion, complete genome
          Length = 15828

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    aaatgacaattcatacaagaa 83
             |||||||||||||||||||||
Sbjct: 15514 aaatgacaattcatacaagaa 15534



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>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16,
            complete sequence
          Length = 238554

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   agtttacaaatgacaattcat 76
            |||||||||||||||||||||
Sbjct: 3119 agtttacaaatgacaattcat 3099



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>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence
          Length = 171278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 617    tccactggtttcttggctggtgtgg 641
              |||||||| ||||||||||||||||
Sbjct: 114236 tccactggcttcttggctggtgtgg 114212



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>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0027D12 map near 50283S, complete sequence
          Length = 128988

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 616   ctccactggtttcttggctggtgt 639
             |||| |||||||||||||||||||
Sbjct: 96562 ctcctctggtttcttggctggtgt 96585



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>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037B06
              map near 50283S, complete sequence
          Length = 149398

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 616    ctccactggtttcttggctggtgt 639
              |||| |||||||||||||||||||
Sbjct: 137567 ctcctctggtttcttggctggtgt 137544



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>gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1280_A04,
             complete sequence
          Length = 88553

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 586   tttctcatctcgtgcttcaaccgt 609
             ||||||||||||||||||| ||||
Sbjct: 35956 tttctcatctcgtgcttcagccgt 35933



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>ref|XM_616959.2| PREDICTED: Bos taurus similar to roundabout 1 isoform b (LOC536815),
            partial mRNA
          Length = 4566

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 624  gtttcttggctggtgtggccttct 647
            |||||||||||||| |||||||||
Sbjct: 3471 gtttcttggctggtctggccttct 3448



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>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence
          Length = 206515

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    gtgagctagctagcctttct 465
              ||||||||||||||||||||
Sbjct: 126166 gtgagctagctagcctttct 126185



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>gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, complete sequence
          Length = 188518

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    gtgagctagctagcctttct 465
              ||||||||||||||||||||
Sbjct: 174295 gtgagctagctagcctttct 174276



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>emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chromosome 9q13-21.2
             Contains a novel gene (FLJ20559), the OSTF1 gene for
             osteoclast stimulating factor 1 (OSF, SH3P2) and a CpG
             island, complete sequence
          Length = 153392

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   atggggccaaatatatgtta 303
             ||||||||||||||||||||
Sbjct: 65093 atggggccaaatatatgtta 65074



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 616      ctccactggtttcttggctggtgt 639
                |||| |||||||||||||||||||
Sbjct: 14597149 ctcctctggtttcttggctggtgt 14597172



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 586      tttctcatctcgtgcttcaaccgt 609
                ||||||||||||||||||| ||||
Sbjct: 22623418 tttctcatctcgtgcttcagccgt 22623395



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>dbj|AK105760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D06, full
            insert sequence
          Length = 1994

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 586  tttctcatctcgtgcttcaaccgt 609
            ||||||||||||||||||| ||||
Sbjct: 1293 tttctcatctcgtgcttcagccgt 1270



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>dbj|AK099541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032J01, full
            insert sequence
          Length = 1752

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 586  tttctcatctcgtgcttcaaccgt 609
            ||||||||||||||||||| ||||
Sbjct: 1082 tttctcatctcgtgcttcagccgt 1059



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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    gtgagctagctagcctttct 465
              ||||||||||||||||||||
Sbjct: 164090 gtgagctagctagcctttct 164109



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 616      ctccactggtttcttggctggtgt 639
                |||| |||||||||||||||||||
Sbjct: 14679150 ctcctctggtttcttggctggtgt 14679173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,170,579
Number of Sequences: 3902068
Number of extensions: 5170579
Number of successful extensions: 89598
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89478
Number of HSP's gapped (non-prelim): 120
length of query: 700
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 677
effective length of database: 17,143,297,704
effective search space: 11606012545608
effective search space used: 11606012545608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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