ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 0.47
2gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 0.47
3gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 0.47
4emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 42 0.47
5gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.47
6gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 1.9
7gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 40 1.9
8ref|XM_959093.1| Neurospora crassa OR74A hypothetical protein (N... 40 1.9
9ref|XM_330572.1| Neurospora crassa OR74A hypothetical protein (N... 40 1.9
10gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 1.9
11gb|AC148831.2| Pan troglodytes BAC clone CH251-134F2 from chromo... 40 1.9
12gb|AE004164.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 1.9
13emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on ch... 40 1.9
14gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 1.9
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 1.9
16emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid con... 40 1.9
17gb|AC182735.3| Pan troglodytes BAC clone CH251-257K2 from chromo... 40 1.9
18dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 1.9
19gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 1.9
20gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, compl... 40 1.9
21ref|NM_022638.1| Rattus norvegicus transient receptor potential ... 40 1.9
22gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 1.9
23gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049... 40 1.9
24gb|AF136401.1|AF136401 Rattus norvegicus TRP2 mRNA, complete cds 40 1.9
25dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 40 1.9
26dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 40 1.9
27dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone... 40 1.9
28gb|AC132804.2| Homo sapiens chromosome 16 clone LA16c-336H4, com... 40 1.9
29dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-... 40 1.9
30gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 7.3
31ref|NM_186334.2| Oryza sativa (japonica cultivar-group), mRNA 38 7.3
32ref|XM_506412.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 7.3
33gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 38 7.3
34ref|XM_369401.1| Magnaporthe grisea 70-15 chromosome III hypothe... 38 7.3
35gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 7.3
36gb|AY707613.1| Plasmodium vivax isolate NS06 merozoite surface p... 38 7.3
37gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome... 38 7.3
38gb|AC102087.12| Mus musculus chromosome 13, clone RP23-166D15, c... 38 7.3
39emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 7.3
40gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, comple... 38 7.3
41gb|AC006455.2| Homo sapiens PAC clone RP5-905H7 from 7, complete... 38 7.3
42ref|XM_660330.1| Cryptosporidium hominis TU502 hypothetical prot... 38 7.3
43gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 38 7.3
44gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 7.3
45gb|AC134618.2| Homo sapiens BAC clone RP11-1241A4 from 7, comple... 38 7.3
46emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 38 7.3
47emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome... 38 7.3
48emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 38 7.3
49emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 38 7.3
50emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 38 7.3
51emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 38 7.3
52emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 7.3
53emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 7.3
54emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 38 7.3
55gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 7.3
56gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell ... 38 7.3
57gb|AE012518.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 7.3
58gb|CP000133.1| Rhizobium etli CFN 42, complete genome 38 7.3
59gb|AC068061.6| Homo sapiens chromosome 10 clone RP11-444F4, comp... 38 7.3
60dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 7.3
61gb|AC006457.4| Homo sapiens PAC clone RP5-1193P9 from 7p11.2-q11... 38 7.3
62ref|XM_682240.1| PREDICTED: Danio rerio similar to steroid recep... 38 7.3
63gb|S65123.1| lip=extracellular lipase [Aeromonas hydrophila, H3,... 38 7.3
64gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 38 7.3
65gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 7.3
66gb|L77573.1|AEOALT Aeromonas hydrophila cytotonic enterotoxin (a... 38 7.3
67gb|AF288082.1|AF288082 Photorhabdus luminescens strain NC19; ATC... 38 7.3
68dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
69gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, r... 38 7.3
70dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 7.3
71gb|AC134619.2| Homo sapiens BAC clone RP11-1367K15 from 7, compl... 38 7.3
72dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
73dbj|AB113355.2| Sus scrofa 433 kb genomic segment, located betwe... 38 7.3
74dbj|AK102110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
75emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 7.3
76dbj|AK061125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
77emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in l... 38 7.3
78gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49... 38 7.3
79gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15... 38 7.3
80gb|DQ302132.1| Aeromonas hydrophila strain HA7 cytotonic enterot... 38 7.3
81gb|DQ302131.1| Aeromonas hydrophila strain GA1 cytotonic enterot... 38 7.3
82gb|DQ302130.1| Aeromonas hydrophila strain CA1 cytotonic enterot... 38 7.3
83gb|DQ302128.1| Aeromonas hydrophila strain BA16 cytotonic entero... 38 7.3
84gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 38 7.3
85dbj|AB012720.1| Oncorhynchus masou mG120 mRNA for GTP-binding pr... 38 7.3 
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 14      tgatggcgatgatcaccaccagcgc 38
               |||||||| ||||||||||||||||
Sbjct: 1477411 tgatggcgctgatcaccaccagcgc 1477387
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 14      tgatggcgatgatcaccacca 34
               |||||||||||||||||||||
Sbjct: 3416670 tgatggcgatgatcaccacca 3416690
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 24      gatcaccaccagcgccaccag 44
               |||||||||||||||||||||
Sbjct: 4704721 gatcaccaccagcgccaccag 4704701
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     cgatgatcaccaccagcgcca 40
              |||||||||||||||||||||
Sbjct: 335340 cgatgatcaccaccagcgcca 335320
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     ccaccagcgccaccaggggca 49
              |||||||||||||||||||||
Sbjct: 924143 ccaccagcgccaccaggggca 924123
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aggatgatggcgatgatcac 29
              ||||||||||||||||||||
Sbjct: 504218 aggatgatggcgatgatcac 504199



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 24      gatcaccaccagcgccaccaggg 46
               |||||||||||||| ||||||||
Sbjct: 1118235 gatcaccaccagcgacaccaggg 1118213
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tgatggcgatgatcaccacc 33
              ||||||||||||||||||||
Sbjct: 141259 tgatggcgatgatcaccacc 141240
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>ref|XM_959093.1| Neurospora crassa OR74A hypothetical protein (NCU03137.1) partial
            mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gatgcagaggatgatggcga 22
            ||||||||||||||||||||
Sbjct: 2047 gatgcagaggatgatggcga 2066
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>ref|XM_330572.1| Neurospora crassa OR74A hypothetical protein (NCU03137.1) partial
            mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gatgcagaggatgatggcga 22
            ||||||||||||||||||||
Sbjct: 2047 gatgcagaggatgatggcga 2066
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 32      ccagcgccaccaggggcagc 51
               ||||||||||||||||||||
Sbjct: 3007818 ccagcgccaccaggggcagc 3007799
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>gb|AC148831.2| Pan troglodytes BAC clone CH251-134F2 from chromosome 7, complete
              sequence
          Length = 163831

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     caccaccagcgccaccaggg 46
              ||||||||||||||||||||
Sbjct: 143332 caccaccagcgccaccaggg 143351



 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    caccaccagcgccaccaggg 46
             ||||||||||||||||||||
Sbjct: 20499 caccaccagcgccaccaggg 20480
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>gb|AE004164.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 72 of
             251 of the complete chromosome
          Length = 12695

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    gatggcgatgatcaccacca 34
             ||||||||||||||||||||
Sbjct: 11600 gatggcgatgatcaccacca 11619
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>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a
             ribosomal protein S6 (RPS6) pseudogene, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tgaagctgtggctcctcctg 135
             ||||||||||||||||||||
Sbjct: 72157 tgaagctgtggctcctcctg 72138
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      accaggggcagcgagatcac 59
               ||||||||||||||||||||
Sbjct: 1808104 accaggggcagcgagatcac 1808085
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 20      cgatgatcaccaccagcgcc 39
               ||||||||||||||||||||
Sbjct: 3514210 cgatgatcaccaccagcgcc 3514229
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>emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid contig 5C2
          Length = 98769

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gatgcagaggatgatggcga 22
             ||||||||||||||||||||
Sbjct: 43659 gatgcagaggatgatggcga 43640
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>gb|AC182735.3| Pan troglodytes BAC clone CH251-257K2 from chromosome 7, complete
             sequence
          Length = 156146

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    caccaccagcgccaccaggg 46
             ||||||||||||||||||||
Sbjct: 32761 caccaccagcgccaccaggg 32780
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      accaggggcagcgagatcac 59
               ||||||||||||||||||||
Sbjct: 1811794 accaggggcagcgagatcac 1811775
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      gatcaccaccagcgccacca 43
               ||||||||||||||||||||
Sbjct: 1660218 gatcaccaccagcgccacca 1660237
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>gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, complete sequence
          Length = 141513

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tgaagctgtggctcctcctg 135
              ||||||||||||||||||||
Sbjct: 125593 tgaagctgtggctcctcctg 125574
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>ref|NM_022638.1| Rattus norvegicus transient receptor potential cation channel,
            subfamily C, member 2 (Trpc2), mRNA
          Length = 3340

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gctgtggctcctcctgttgc 139
            ||||||||||||||||||||
Sbjct: 2133 gctgtggctcctcctgttgc 2152
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 17      tggcgatgatcaccaccagcgcca 40
               ||||||||| ||||||||||||||
Sbjct: 3167675 tggcgatgagcaccaccagcgcca 3167652
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>gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049, complete sequence
          Length = 42393

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  tgaagctgtggctcctcctg 135
            ||||||||||||||||||||
Sbjct: 3226 tgaagctgtggctcctcctg 3207
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>gb|AF136401.1|AF136401 Rattus norvegicus TRP2 mRNA, complete cds
          Length = 3340

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gctgtggctcctcctgttgc 139
            ||||||||||||||||||||
Sbjct: 2133 gctgtggctcctcctgttgc 2152
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>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete
             sequence
          Length = 159320

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gatgatggcgatgatcacca 31
             ||||||||||||||||||||
Sbjct: 13433 gatgatggcgatgatcacca 13414
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>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete
             sequence
          Length = 157800

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gatgatggcgatgatcacca 31
             ||||||||||||||||||||
Sbjct: 91738 gatgatggcgatgatcacca 91719
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>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete
             sequence
          Length = 112519

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gatgatggcgatgatcacca 31
             ||||||||||||||||||||
Sbjct: 47615 gatgatggcgatgatcacca 47596
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>gb|AC132804.2| Homo sapiens chromosome 16 clone LA16c-336H4, complete sequence
          Length = 36331

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 3  gatgcagaggatgatggcgatgat 26
          |||| |||||||||||||||||||
Sbjct: 64 gatgaagaggatgatggcgatgat 41
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>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section
              2/4
          Length = 300000

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     gatgatggcgatgatcacca 31
              ||||||||||||||||||||
Sbjct: 247910 gatgatggcgatgatcacca 247891
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     tgatcaccaccagcgccac 41
              |||||||||||||||||||
Sbjct: 327765 tgatcaccaccagcgccac 327783
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>ref|NM_186334.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1184

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gctgtggctcctcctgttg 138
           |||||||||||||||||||
Sbjct: 765 gctgtggctcctcctgttg 783
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>ref|XM_506412.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1112_E08.118
           mRNA
          Length = 1578

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gctgtggctcctcctgttg 138
           |||||||||||||||||||
Sbjct: 981 gctgtggctcctcctgttg 999
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 18      ggcgatgatcaccaccagc 36
               |||||||||||||||||||
Sbjct: 4336947 ggcgatgatcaccaccagc 4336929



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 27      caccaccagcgccaccagg 45
               |||||||||||||||||||
Sbjct: 3048594 caccaccagcgccaccagg 3048576



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 27      caccaccagcgccaccagg 45
               |||||||||||||||||||
Sbjct: 1119615 caccaccagcgccaccagg 1119633
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>ref|XM_369401.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG06063.4) partial mRNA
          Length = 3417

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 1    acgatgcagaggatgatggcgatgatc 27
            |||||| ||||| ||||||||||||||
Sbjct: 2768 acgatggagagggtgatggcgatgatc 2794
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 20      cgatgatcaccaccagcgc 38
               |||||||||||||||||||
Sbjct: 1993984 cgatgatcaccaccagcgc 1993966



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 24      gatcaccaccagcgccaccaggg 46
               |||| ||||||||||||||||||
Sbjct: 1208897 gatcgccaccagcgccaccaggg 1208875
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>gb|AY707613.1| Plasmodium vivax isolate NS06 merozoite surface protein 4 gene,
           partial cds
          Length = 846

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   acgatgcagaggatgatgg 19
           |||||||||||||||||||
Sbjct: 632 acgatgcagaggatgatgg 650
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>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence
          Length = 208153

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   aaggctgaagctgtggctc 129
             |||||||||||||||||||
Sbjct: 10119 aaggctgaagctgtggctc 10101
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>gb|AC102087.12| Mus musculus chromosome 13, clone RP23-166D15, complete sequence
          Length = 221034

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 13     atgatggcgatgatcaccaccag 35
              ||||||| |||||||||||||||
Sbjct: 152461 atgatggagatgatcaccaccag 152483
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>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14
          Length = 307550

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     caccaccagcgccaccagg 45
              |||||||||||||||||||
Sbjct: 192794 caccaccagcgccaccagg 192776
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>gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, complete sequence
          Length = 189936

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 111    aaggctgaagctgtggctc 129
              |||||||||||||||||||
Sbjct: 111499 aaggctgaagctgtggctc 111481
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>gb|AC006455.2| Homo sapiens PAC clone RP5-905H7 from 7, complete sequence
          Length = 139384

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    accaccagcgccaccaggg 46
             |||||||||||||||||||
Sbjct: 84757 accaccagcgccaccaggg 84739
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>ref|XM_660330.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70096)
           partial mRNA
          Length = 333

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 3   gatgcagaggatgatggcgatga 25
           |||||||||||||||| ||||||
Sbjct: 259 gatgcagaggatgatgacgatga 281
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 24      gatcaccaccagcgccaccaggg 46
               ||||||||||||| |||||||||
Sbjct: 1932979 gatcaccaccagcaccaccaggg 1932957
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      ggcgatgatcaccaccagc 36
               |||||||||||||||||||
Sbjct: 2253482 ggcgatgatcaccaccagc 2253500
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>gb|AC134618.2| Homo sapiens BAC clone RP11-1241A4 from 7, complete sequence
          Length = 213481

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     accaccagcgccaccaggg 46
              |||||||||||||||||||
Sbjct: 107560 accaccagcgccaccaggg 107578
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ggcgatgatcaccaccagc 36
              |||||||||||||||||||
Sbjct: 177892 ggcgatgatcaccaccagc 177874
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>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13
          Length = 346051

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     caccaccagcgccaccagg 45
              |||||||||||||||||||
Sbjct: 280622 caccaccagcgccaccagg 280604
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>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    caccaccagcgccaccagg 45
             |||||||||||||||||||
Sbjct: 85790 caccaccagcgccaccagg 85808
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     gatcaccaccagcgccaccaggg 46
              ||||||||||||| |||||||||
Sbjct: 106887 gatcaccaccagcaccaccaggg 106909
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     gatcaccaccagcgccaccaggg 46
              ||||||||||||| |||||||||
Sbjct: 110865 gatcaccaccagcaccaccaggg 110887
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>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     atgatcaccaccagcgccaccag 44
              ||||||||||||||| |||||||
Sbjct: 280256 atgatcaccaccagcaccaccag 280278
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14
          Length = 278492

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ggcgatgatcaccaccagc 36
              |||||||||||||||||||
Sbjct: 213944 ggcgatgatcaccaccagc 213926
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>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14
          Length = 327650

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     caccaccagcgccaccagg 45
              |||||||||||||||||||
Sbjct: 133028 caccaccagcgccaccagg 133046
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    ccaccaggggcagcgagatcacc 60
             ||||||||| |||||||||||||
Sbjct: 90913 ccaccagggtcagcgagatcacc 90891
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ggcgatgatcaccaccagc 36
              |||||||||||||||||||
Sbjct: 181066 ggcgatgatcaccaccagc 181048
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>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172401

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 4     atgcagaggatgatggcgatgat 26
             ||||||| |||||||||||||||
Sbjct: 88996 atgcagatgatgatggcgatgat 88974
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>gb|AE012518.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 426
            of 460 of the complete genome
          Length = 10619

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 16   atggcgatgatcaccaccagcgc 38
            ||||||||||||| |||||||||
Sbjct: 5791 atggcgatgatcagcaccagcgc 5769
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 24      gatcaccaccagcgccacc 42
               |||||||||||||||||||
Sbjct: 1333425 gatcaccaccagcgccacc 1333407
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>gb|AC068061.6| Homo sapiens chromosome 10 clone RP11-444F4, complete sequence
          Length = 190007

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 4     atgcagaggatgatggcgatgat 26
             |||| ||||||||||||||||||
Sbjct: 20067 atgctgaggatgatggcgatgat 20045
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 24      gatcaccaccagcgccaccaggg 46
               ||||||||||||| |||||||||
Sbjct: 2022177 gatcaccaccagcaccaccaggg 2022199
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>gb|AC006457.4| Homo sapiens PAC clone RP5-1193P9 from 7p11.2-q11.2, complete
            sequence
          Length = 134187

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   accaccagcgccaccaggg 46
            |||||||||||||||||||
Sbjct: 7338 accaccagcgccaccaggg 7356
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>ref|XM_682240.1| PREDICTED: Danio rerio similar to steroid receptor-interacting SNF2
            domain protein (LOC558947), mRNA
          Length = 4368

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  tgaagctgtggctcctcct 134
            |||||||||||||||||||
Sbjct: 3423 tgaagctgtggctcctcct 3405
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>gb|S65123.1| lip=extracellular lipase [Aeromonas hydrophila, H3, Genomic, 2842 nt]
          Length = 2842

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   gatcaccaccagcgccacc 42
            |||||||||||||||||||
Sbjct: 1987 gatcaccaccagcgccacc 1969
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      agaggatgatggcgatgat 26
              |||||||||||||||||||
Sbjct: 904250 agaggatgatggcgatgat 904268
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 16      atggcgatgatcaccaccagcgc 38
               ||||||||||||| |||||||||
Sbjct: 4788295 atggcgatgatcagcaccagcgc 4788273
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>gb|L77573.1|AEOALT Aeromonas hydrophila cytotonic enterotoxin (alt) gene, complete cds
          Length = 1371

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  gatcaccaccagcgccacc 42
           |||||||||||||||||||
Sbjct: 543 gatcaccaccagcgccacc 525
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>gb|AF288082.1|AF288082 Photorhabdus luminescens strain NC19; ATCC29304 NgrD (ngrD) gene,
           partial cds; YcaA (ycaA), YcaB (ycaB), YcaC (ycaC), YcaD
           (ycaD), and YcbA (ycbA) genes, complete cds; and YccA
           gene, partial cds
          Length = 7356

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  atcaccaccagcgccacca 43
           |||||||||||||||||||
Sbjct: 962 atcaccaccagcgccacca 980
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 120      gctgtggctcctcctgttg 138
                |||||||||||||||||||
Sbjct: 22575532 gctgtggctcctcctgttg 22575514
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>gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone
             BACR05C20, complete sequence
          Length = 177278

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     atgcagaggatgatggcga 22
             |||||||||||||||||||
Sbjct: 81952 atgcagaggatgatggcga 81970
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 9       gaggatgatggcgatgatc 27
               |||||||||||||||||||
Sbjct: 4453490 gaggatgatggcgatgatc 4453508
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>gb|AC134619.2| Homo sapiens BAC clone RP11-1367K15 from 7, complete sequence
          Length = 225116

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     accaccagcgccaccaggg 46
              |||||||||||||||||||
Sbjct: 137537 accaccagcgccaccaggg 137555



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    accaccagcgccaccaggg 46
             |||||||||||||||||||
Sbjct: 14760 accaccagcgccaccaggg 14742
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>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_E08
          Length = 119926

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 120   gctgtggctcctcctgttg 138
             |||||||||||||||||||
Sbjct: 55914 gctgtggctcctcctgttg 55896
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>dbj|AB113355.2| Sus scrofa 433 kb genomic segment, located between the non-classical
             and classical SLA class I gene cluster, clone: BAC 353A11
          Length = 144448

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 29    ccaccagcgccaccaggggcagc 51
             ||||||||||||||||| |||||
Sbjct: 54868 ccaccagcgccaccaggtgcagc 54890
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>dbj|AK102110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084E14, full
           insert sequence
          Length = 1577

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gctgtggctcctcctgttg 138
           |||||||||||||||||||
Sbjct: 980 gctgtggctcctcctgttg 998
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 26      tcaccaccagcgccaccag 44
               |||||||||||||||||||
Sbjct: 2811486 tcaccaccagcgccaccag 2811468
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>dbj|AK061125.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G10, full
           insert sequence
          Length = 1184

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gctgtggctcctcctgttg 138
           |||||||||||||||||||
Sbjct: 765 gctgtggctcctcctgttg 783
to top
>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22,
             complete sequence
          Length = 222195

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   tgaagctgtggctcctcct 134
             |||||||||||||||||||
Sbjct: 57842 tgaagctgtggctcctcct 57860
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>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete
              sequence
          Length = 236475

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      atgcagaggatgatggcga 22
              |||||||||||||||||||
Sbjct: 173426 atgcagaggatgatggcga 173444
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>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete
              sequence
          Length = 315988

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 4      atgcagaggatgatggcgatgat 26
              ||||||| |||||||||||||||
Sbjct: 205416 atgcagatgatgatggcgatgat 205394
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>gb|DQ302132.1| Aeromonas hydrophila strain HA7 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1107

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  gatcaccaccagcgccacc 42
           |||||||||||||||||||
Sbjct: 438 gatcaccaccagcgccacc 420
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>gb|DQ302131.1| Aeromonas hydrophila strain GA1 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1104

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  gatcaccaccagcgccacc 42
           |||||||||||||||||||
Sbjct: 438 gatcaccaccagcgccacc 420
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>gb|DQ302130.1| Aeromonas hydrophila strain CA1 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1104

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  gatcaccaccagcgccacc 42
           |||||||||||||||||||
Sbjct: 438 gatcaccaccagcgccacc 420
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>gb|DQ302128.1| Aeromonas hydrophila strain BA16 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1107

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  gatcaccaccagcgccacc 42
           |||||||||||||||||||
Sbjct: 438 gatcaccaccagcgccacc 420
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ggcgatgatcaccaccagc 36
              |||||||||||||||||||
Sbjct: 571717 ggcgatgatcaccaccagc 571699
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>dbj|AB012720.1| Oncorhynchus masou mG120 mRNA for GTP-binding protein, complete cds
          Length = 3081

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    gatgcagaggatgatggcg 21
            |||||||||||||||||||
Sbjct: 1482 gatgcagaggatgatggcg 1464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,134,977
Number of Sequences: 3902068
Number of extensions: 1134977
Number of successful extensions: 82603
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80214
Number of HSP's gapped (non-prelim): 2389
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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