ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DB130_PANTR (Q30KJ9) Beta-defensin 130 precursor (Defensin, beta... 30 5.4
2DB130_HUMAN (Q30KQ2) Beta-defensin 130 precursor (Defensin, beta... 30 5.4
3FAB1_YEAST (P34756) 1-phosphatidylinositol-3-phosphate 5-kinase ... 29 9.2

>DB130_PANTR (Q30KJ9) Beta-defensin 130 precursor (Defensin, beta 130)|
          Length = 79

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 581 CNRVRSCCRRWWL 543
           CN  + CCRRWW+
Sbjct: 53  CNEGKKCCRRWWI 65



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>DB130_HUMAN (Q30KQ2) Beta-defensin 130 precursor (Defensin, beta 130)|
           (Beta-defensin 30) (DEFB-30)
          Length = 79

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 581 CNRVRSCCRRWWL 543
           CN  + CCRRWW+
Sbjct: 53  CNEGKKCCRRWWI 65



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>FAB1_YEAST (P34756) 1-phosphatidylinositol-3-phosphate 5-kinase FAB1 (EC|
           2.7.1.150) (Phosphatidylinositol-3-phosphate 5-kinase)
           (Type III PIP kinase)
          Length = 2278

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 257 DRLTYQYLSFLT*KPLSFVSVSRISFATSNSHVS-SETHRHALSSANSGPMVKEKN 421
           D +T   LS ++   +S  + S I+ ATS SHV+ + +H +  ++AN+   V +KN
Sbjct: 59  DLVTNPILSNISVPKISPPTSSSIATATSTSHVTGTASHSNIKANANTSTSVNKKN 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,095,868
Number of Sequences: 219361
Number of extensions: 1785445
Number of successful extensions: 4150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4150
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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