ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal16a18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 367 bits (185), Expect = 3e-98 Identities = 236/253 (93%) Strand = Plus / Minus Query: 1 tctccgaatttaaaataccgaacaaagttagaacattacaaatctcgaggacgcgagtaa 60 ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct: 323456 tctccgaatttaaaataccgaacaaagttagaacattacaagtctcgaaaccgcgagtag 323397 Query: 61 caagtttgtcttcacattacaagtcgatatcgatcatctaaactaccatcacatagaaga 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323396 cgagtttgtcttcacattacaagtcgatatcgatcatctaaactaccatcacatagaaga 323337 Query: 121 gagctgcggtcatcacgatgagcataatcgcgatgaaactggtcttcatccggttcctcc 180 ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| Sbjct: 323336 gagtcgcggtcatcacgatgagcatcatcgcgatgaaactggtcttcatccagtttctcc 323277 Query: 181 aacactccctcctctctcccgctagatagcgcgcgtatataacttccgcatccgcccttg 240 | |||||||||||||||||||||||||||||||||| |||||||||| |||||||| | Sbjct: 323276 tccgctccctcctctctcccgctagatagcgcgcgtatctaacttccgcctccgccctag 323217 Query: 241 tggtgtacccttt 253 ||||||||||||| Sbjct: 323216 tggtgtacccttt 323204
>gb|U76261.1|HVU76261 Hordeum vulgare highly repeated, retrotransposon-like sequence Length = 5050 Score = 343 bits (173), Expect = 5e-91 Identities = 197/205 (96%) Strand = Plus / Minus Query: 220 taacttccgcatccgcccttgtggtgtaccctttatactctgtccatcagaaagcttttg 279 |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1923 taacttccgcctcctcccttgtggtgtaccctttgtactctgtccatcagaaagcttttg 1864 Query: 280 actcacagagttatcatcactacttgtctgttgcaaatcttccttgccttctacctcagg 339 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1863 actcacagaattatcatcactacttgtctgttgcaaatcttccttgccttctacctcagg 1804 Query: 340 ttgtgtaaagaccatgctacttgcaacagcagcactatcctcaacaggaactgccctgtt 399 |||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||| Sbjct: 1803 ttgtgtaaggaccatgctacttgcaacaacaacactatcctcaacaggaactgcactgtt 1744 Query: 400 cctcaacaggccattctgtccatca 424 ||||||||||||||||||||||||| Sbjct: 1743 cctcaacaggccattctgtccatca 1719 Score = 178 bits (90), Expect = 2e-41 Identities = 108/114 (94%) Strand = Plus / Minus Query: 1 tctccgaatttaaaataccgaacaaagttagaacattacaaatctcgaggacgcgagtaa 60 |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 2051 tctctgaatttaaaataccgaacaaagttagaacattacaagtctcgagaccgcgagtag 1992 Query: 61 caagtttgtcttcacattacaagtcgatatcgatcatctaaactaccatcacat 114 | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 cgagtttgtcttcacattacaagtcgatatcgatcatctaaactaccatcacat 1938 Score = 141 bits (71), Expect = 4e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 414 tctgtccatcaggaatcttttaactcacagcaatatcatcactacgtgtctgttgcaaat 473 |||||||||||| || ||||| |||||||| | |||||||||||| |||||||||||||| Sbjct: 1885 tctgtccatcagaaagcttttgactcacagaattatcatcactacttgtctgttgcaaat 1826 Query: 474 cttccttgccttctacctcgggttgtgtaaggaccgtgttacttgca 520 ||||||||||||||||||| ||||||||||||||| || |||||||| Sbjct: 1825 cttccttgccttctacctcaggttgtgtaaggaccatgctacttgca 1779 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tcacattacaagtcgatatc 91 |||||||||||||||||||| Sbjct: 1943 tcacattacaagtcgatatc 1924
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 244 bits (123), Expect = 3e-61 Identities = 171/187 (91%) Strand = Plus / Plus Query: 63 agtttgtcttcacattacaagtcgatatcgatcatctaaactaccatcacatagaagaga 122 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 101139 agtttgtcttcacattacaagtcgatatcgatcatctaaactatcatcacatagaagaga 101198 Query: 123 gctgcggtcatcacgatgagcataatcgcgatgaaactggtcttcatccggttcctccaa 182 ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 101199 gctgcggtcatcacgatgagcatcatcacgatgaaactcgtcttcatccggttcctccaa 101258 Query: 183 cactccctcctctctcccgctagatagcgcgcgtatataacttccgcatccgcccttgtg 242 |||||||| |||||||||||||||| | |||||| || ||| || || ||||| ||| Sbjct: 101259 tgctccctcccctctcccgctagatagtgggcgtatctagattcggcctcggccctagtg 101318 Query: 243 gtgtacc 249 ||||||| Sbjct: 101319 gtgtacc 101325 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1 tctccgaatttaaaataccgaacaaagttagaacatta 38 |||||||||| |||| ||||||||||| |||||||||| Sbjct: 101079 tctccgaattgaaaagaccgaacaaagatagaacatta 101116
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 72/82 (87%), Gaps = 2/82 (2%) Strand = Plus / Plus Query: 553 ctcccggcagcaaatgaggcagagatcatag-gaacatttagtacaacttctgtggaagt 611 |||| ||||||| ||||||||||||||||| || || || |||||||||||||||||| Sbjct: 515166 ctcctggcagcagctgaggcagagatcatagtgaccacttt-tacaacttctgtggaagt 515224 Query: 612 caactatagatgttctgcagtt 633 |||| || |||||||||||||| Sbjct: 515225 caacaatggatgttctgcagtt 515246 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ctccaacactccctcctctctccc 200 ||||||| |||||||||||||||| Sbjct: 22267437 ctccaacgctccctcctctctccc 22267460
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 1 tctccgaatttaaaataccgaacaaagttagaacattacaaatctcgaggacgcgagtaa 60 |||||||| | |||| ||||||||||| ||||||||||||| ||||||| |||||||| Sbjct: 15787 tctccgaaatcaaaagaccgaacaaagatagaacattacaagtctcgagaccgcgagtag 15728 Query: 61 caagtttgtc 70 | |||||||| Sbjct: 15727 cgagtttgtc 15718
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 67.9 bits (34), Expect = 4e-08 Identities = 72/82 (87%), Gaps = 2/82 (2%) Strand = Plus / Plus Query: 553 ctcccggcagcaaatgaggcagagatcatag-gaacatttagtacaacttctgtggaagt 611 |||| ||||||| ||||||||||||||||| || || || |||||||||||||||||| Sbjct: 111407 ctcctggcagcagctgaggcagagatcatagtgaccacttt-tacaacttctgtggaagt 111465 Query: 612 caactatagatgttctgcagtt 633 |||| || |||||||||||||| Sbjct: 111466 caacaatggatgttctgcagtt 111487
>gb|AY089999.1| Lolium perenne CACTA-family transposon sequence Length = 12483 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 90 tcgatcatctaaactaccatcacatagaagagag 123 |||||||||| ||||||||||||||||||||||| Sbjct: 11780 tcgatcatctgaactaccatcacatagaagagag 11747 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 151 cgatgaaactggtcttcatccggttcctccaacactccctcctctctcccgctagatagc 210 |||||||| ||||||||||| ||||||||| | |||| |||||||| |||| | || || Sbjct: 11722 cgatgaaagtggtcttcatctggttcctcctccgctccgtcctctctaccgccacatggc 11663 Query: 211 gcgcgtatataacttccgcatccgcccttgtggtgtacccttt 253 | |||||| | |||| | ||||| || |||||||||||||| Sbjct: 11662 gtgcgtatctgtcttcggtctccgctctagtggtgtacccttt 11620
>ref|XM_960737.1| Neurospora crassa OR74A hypothetical protein (NCU00690.1) partial mRNA Length = 2793 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 cctgttcctcaacaggccatt 414 ||||||||||||||||||||| Sbjct: 1462 cctgttcctcaacaggccatt 1442
>ref|XM_324869.1| Neurospora crassa OR74A hypothetical protein (NCU00690.1) partial mRNA Length = 2793 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 cctgttcctcaacaggccatt 414 ||||||||||||||||||||| Sbjct: 1462 cctgttcctcaacaggccatt 1442
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cactccctcctctctcccgct 203 ||||||||||||||||||||| Sbjct: 65023 cactccctcctctctcccgct 65003
>gb|AC130841.4| Mus musculus BAC clone RP24-445L16 from chromosome 8, complete sequence Length = 174384 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cactccctcctctctcccgct 203 ||||||||||||||||||||| Sbjct: 161615 cactccctcctctctcccgct 161595
>gb|AC154379.2| Mus musculus BAC clone RP23-52B1 from chromosome 17, complete sequence Length = 234939 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cttgtctgttgcaaatcttcc 322 ||||||||||||||||||||| Sbjct: 195863 cttgtctgttgcaaatcttcc 195843
>gb|AC166351.1| Mus musculus BAC clone RP24-224C7 from chromosome 17, complete sequence Length = 162550 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cttgtctgttgcaaatcttcc 322 ||||||||||||||||||||| Sbjct: 16072 cttgtctgttgcaaatcttcc 16052
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 aggccattctgtccatcagga 427 ||||||||||||||||||||| Sbjct: 3944741 aggccattctgtccatcagga 3944761
>emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on chromosome 2, complete sequence Length = 217148 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cctccaacactccctcctctctccc 200 |||||||||||||| |||||||||| Sbjct: 37673 cctccaacactcccacctctctccc 37649
>ref|NM_203117.1| Arabidopsis thaliana unknown protein AT5G28350 transcript variant AT5G28350.2 mRNA, complete cds Length = 3470 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 26 cagagatcataggaacattt 7
>ref|NM_122718.3| Arabidopsis thaliana unknown protein AT5G28350 transcript variant AT5G28350.1 mRNA, complete cds Length = 3710 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 92 cagagatcataggaacattt 73
>gb|AY147867.2| Acinetobacter sp. 4365 AdeD (adeD) and AdeE (adeE) genes, complete cds Length = 5420 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ttacaagtcgatatcgatca 96 |||||||||||||||||||| Sbjct: 4053 ttacaagtcgatatcgatca 4072
>gb|AC068140.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-246M15, complete sequence Length = 113092 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 aagcttttgactcacagagt 290 |||||||||||||||||||| Sbjct: 27693 aagcttttgactcacagagt 27712
>emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on chromosome 1 Contains a eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (EEF1D) pseudogene, complete sequence Length = 141273 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 ttagtacaacttctgtggaa 609 |||||||||||||||||||| Sbjct: 85414 ttagtacaacttctgtggaa 85395
>emb|AL449196.1| Human DNA sequence from clone RP11-61K10 on chromosome 6 Contains part of the gene for a novel protein similar to FLJ13018 and other hypothetical proteins, complete sequence Length = 33136 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 gaatatcctttcattttttg 659 |||||||||||||||||||| Sbjct: 9764 gaatatcctttcattttttg 9745
>emb|AL133383.10| Human DNA sequence from clone GS1-204I12 on chromosome 1 Contains two novel genes, complete sequence Length = 204158 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 tgaggcagagatcataggaa 586 |||||||||||||||||||| Sbjct: 109926 tgaggcagagatcataggaa 109907
>emb|AL034370.1|HSA218J18 Human DNA sequence from clone RP6-218J18 on chromosome Xp11.3-11.4 Contains the NDP gene for norrie disease (pseudoglioma), a RNA-binding region (RNP1, RRM) containing 2 (RNPC2) pseudogene, a novel gene and a CpG island, complete sequence Length = 119945 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 caggttgtgtaaagaccatg 355 |||||||||||||||||||| Sbjct: 103143 caggttgtgtaaagaccatg 103124
>gb|AC112770.4| Homo sapiens 3 BAC RP11-686L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187977 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cttgtggtgtaccctttata 256 |||||||||||||||||||| Sbjct: 162157 cttgtggtgtaccctttata 162176
>gb|AY039952.1| Arabidopsis thaliana At5g28350 mRNA sequence Length = 3609 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 26 cagagatcataggaacattt 7
>gb|BT008665.1| Arabidopsis thaliana clone RAFL17-08-D22 (R50323) unknown protein (At5g28440) mRNA, complete cds Length = 694 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 55 cagagatcataggaacattt 36
>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21, complete sequence Length = 168569 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 tctgttgcaaatcttccttg 481 |||||||||||||||||||| Sbjct: 11264 tctgttgcaaatcttccttg 11283 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tctgttgcaaatcttccttg 325 |||||||||||||||||||| Sbjct: 11264 tctgttgcaaatcttccttg 11283
>emb|BX005459.6| Zebrafish DNA sequence from clone CH211-214N22 in linkage group 6, complete sequence Length = 211210 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 ctcacagcaatatcatcact 456 |||||||||||||||||||| Sbjct: 138372 ctcacagcaatatcatcact 138391
>emb|AL928625.5| Mouse DNA sequence from clone RP24-528P17 on chromosome 4, complete sequence Length = 170639 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tggtgtaccctttatactct 260 |||||||||||||||||||| Sbjct: 136569 tggtgtaccctttatactct 136588
>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21, complete sequence Length = 179432 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tctgttgcaaatcttccttg 325 |||||||||||||||||||| Sbjct: 47627 tctgttgcaaatcttccttg 47646 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 tctgttgcaaatcttccttg 481 |||||||||||||||||||| Sbjct: 47627 tctgttgcaaatcttccttg 47646
>gb|AC105746.10| Oryza sativa chromosome 10 BAC OSJNBb0086I08 genomic sequence, complete sequence Length = 126842 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ctccctcctctctcccgcta 204 |||||||||||||||||||| Sbjct: 113873 ctccctcctctctcccgcta 113854
>ref|NM_141680.1| Drosophila melanogaster CG16908-RA (CG16908), mRNA Length = 3243 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ttgcagcaccaccaccagga 535 |||||||||||||||||||| Sbjct: 297 ttgcagcaccaccaccagga 278
>gb|AC096750.3| Homo sapiens BAC clone RP11-426F15 from 4, complete sequence Length = 159618 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 atcctttcattttttgcaca 663 |||||||||||||||||||| Sbjct: 147344 atcctttcattttttgcaca 147325
>gb|AC079899.16| Homo sapiens 4 BAC RP11-399C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166679 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 atcctttcattttttgcaca 663 |||||||||||||||||||| Sbjct: 69427 atcctttcattttttgcaca 69408
>gb|AC072057.8| Homo sapiens BAC clone RP11-312C1 from 7, complete sequence Length = 140150 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aacactccctcctctctccc 200 |||||||||||||||||||| Sbjct: 28783 aacactccctcctctctccc 28802
>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181835 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 tgcatcaatgcctttaattg 710 |||||||||||||||||||| Sbjct: 127219 tgcatcaatgcctttaattg 127200
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ctccctcctctctcccgcta 204 |||||||||||||||||||| Sbjct: 5553649 ctccctcctctctcccgcta 5553668
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ctccaacactccctcctctctccc 200 ||||||| |||||||||||||||| Sbjct: 19837751 ctccaacgctccctcctctctccc 19837774
>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR23O04, complete sequence Length = 160817 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ttgcagcaccaccaccagga 535 |||||||||||||||||||| Sbjct: 28815 ttgcagcaccaccaccagga 28834
>emb|BX832649.1|CNS0A1N8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3619 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 92 cagagatcataggaacattt 73
>emb|BX832869.1|CNS09YYE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL18ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 680 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 96 cagagatcataggaacattt 77
>gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, region 85E-85E, BAC clone BACR30F01, complete sequence Length = 177028 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ttgcagcaccaccaccagga 535 |||||||||||||||||||| Sbjct: 135968 ttgcagcaccaccaccagga 135987
>gb|AC062016.5| Homo sapiens BAC clone RP11-59P4 from 2, complete sequence Length = 187799 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 agtttgtcttcacattacaa 82 |||||||||||||||||||| Sbjct: 71889 agtttgtcttcacattacaa 71870
>gb|AF262038.1|F21B23 Arabidopsis thaliana BAC F21B23 Length = 71284 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 51219 cagagatcataggaacattt 51238 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cagagatcataggaacattt 591 |||||||||||||||||||| Sbjct: 2358 cagagatcataggaacattt 2339
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ctccaacactccctcctctctccc 200 ||||||| |||||||||||||||| Sbjct: 26081 ctccaacgctccctcctctctccc 26104
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ctccaacactccctcctctctccc 200 ||||||| |||||||||||||||| Sbjct: 5929 ctccaacgctccctcctctctccc 5952
>emb|BX842663.3| Mouse DNA sequence from clone RP23-176P20 on chromosome 2, complete sequence Length = 195115 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 585 aacatttagtacaacttctg 604 |||||||||||||||||||| Sbjct: 131261 aacatttagtacaacttctg 131242
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ctccaacactccctcctctctccc 200 ||||||| |||||||||||||||| Sbjct: 166702 ctccaacgctccctcctctctccc 166725
>gb|AC007370.7|AC007370 Homo sapiens, clone 22_A_3, complete sequence Length = 176426 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 atcctttcattttttgcaca 663 |||||||||||||||||||| Sbjct: 3523 atcctttcattttttgcaca 3504
>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the complete sequence Length = 214323 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ttgcagcaccaccaccagga 535 |||||||||||||||||||| Sbjct: 48538 ttgcagcaccaccaccagga 48557
>emb|AL355834.4|CNS05TCN Human chromosome 14 DNA sequence BAC R-932A10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 222275 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 taaactaccatcacatagaa 118 |||||||||||||||||||| Sbjct: 36739 taaactaccatcacatagaa 36720
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ctccctcctctctcccgcta 204 |||||||||||||||||||| Sbjct: 5554436 ctccctcctctctcccgcta 5554455
>emb|AL591704.7| Human DNA sequence from clone RP1-128L15 on chromosome 1q21.1-21.3 Contains the 5' end of the gene for peptidoglycan recognition protein-I-alpha (PGLYRPIalpha), the PGLYRP4 gene for peptidoglycan recognition protein 4, the S100A9 gene for S100 calcium binding protein A9 (calgranulin B), the S100A12 gene for S100 calcium binding protein A12 (calgranulin C), a LAPTM4B (lysosomal associated protein transmembrane 4 beta) pseudogene, the S100A8 gene for S100 calcium binding protein A8 (calgranulin A), a S100 calcium-binding protein pseudogene, the S100A15 gene for S100 calcium binding protein A15, a S100 calcium-binding protein pseudogene, the gene for a novel S100 calcium-binding protein and the S100A7 gene for S100 calcium binding protein A7 (psoriasin 1), complete sequence Length = 164144 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 gcaaatgaggcagagatcat 581 |||||||||||||||||||| Sbjct: 151464 gcaaatgaggcagagatcat 151483
>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete sequence Length = 123244 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cttttaactcacagcaatat 449 |||||||||||||||||||| Sbjct: 78247 cttttaactcacagcaatat 78266
>gb|AC131655.4| Mus musculus BAC clone RP23-233G16 from 8, complete sequence Length = 190990 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 tgactcacagagttatcatc 297 |||||||||||||||||||| Sbjct: 151661 tgactcacagagttatcatc 151680
>tpd|BR000043.1| TPA: TPA_exp: Homo sapiens S100 calcium binding protein A7-like gene duplications, clone RP1-128L15, chromosome 1q21.1-21.3 Length = 164144 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 gcaaatgaggcagagatcat 581 |||||||||||||||||||| Sbjct: 151464 gcaaatgaggcagagatcat 151483
>emb|AL807745.7| Mouse DNA sequence from clone RP23-20E10 on chromosome 4, complete sequence Length = 218691 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cagcactatcctcaacagga 388 |||||||||||||||||||| Sbjct: 45946 cagcactatcctcaacagga 45965 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,625,604 Number of Sequences: 3902068 Number of extensions: 6625604 Number of successful extensions: 120668 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120337 Number of HSP's gapped (non-prelim): 330 length of query: 712 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 689 effective length of database: 17,143,297,704 effective search space: 11811732118056 effective search space used: 11811732118056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
