Clone Information

BLAST Search Result

Clone Name	rbaal16a17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CD48A_ARATH (P54609) Cell division control protein 48 homolog A ...	133	3e-31
2	CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ...	129	4e-30
3	CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h...	126	3e-29
4	CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val...	124	1e-28
5	CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog	122	6e-28
6	TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER...	103	2e-22
7	TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER...	103	2e-22
8	TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T...	103	2e-22
9	TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T...	103	2e-22
10	TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T...	102	8e-22
11	TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h...	96	4e-20
12	TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h...	96	4e-20
13	CDC48_YEAST (P25694) Cell division control protein 48	67	4e-11
14	CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48	65	1e-10
15	CDAT_PLAF7 (P46468) Putative cell division cycle ATPase	40	0.004
16	Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297	38	0.014
17	CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C ...	35	0.15
18	UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (E...	32	1.3
19	KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like ...	32	1.3
20	SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia...	31	1.7
21	KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-lik...	31	1.7
22	SPAST_HUMAN (Q9UBP0) Spastin	31	2.2
23	SPAST_MOUSE (Q9QYY8) Spastin	31	2.2
24	KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-lik...	31	2.2
25	Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156	30	2.9
26	KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC ...	30	2.9
27	KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (E...	30	2.9
28	KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (E...	30	2.9
29	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	30	3.8
30	CX017_HUMAN (Q9NX05) Protein CXorf17 (Tumor antigen BJ-HCC-21)	30	5.0
31	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	30	5.0
32	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	29	6.5
33	CAPU_DROME (Q24120) Protein cappuccino	29	6.5
34	KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3...	29	6.5
35	ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein...	29	8.5
36	AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Parapleg...	29	8.5
37	VPS5_SCHPO (Q9C0U7) Vacuolar protein sorting-associated protein ...	29	8.5
38	AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)	29	8.5
39	RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as...	29	8.5
40	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	29	8.5
41	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	29	8.5
42	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	29	8.5

>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  133 bits (334), Expect = 3e-31
 Identities = 72/101 (71%), Positives = 73/101 (72%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ALAKYTQGFSGADITEICQRACKYAI                NP            EI+A
Sbjct: 678 ALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKA 737

Query: 328 AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 738 AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778

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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  129 bits (325), Expect = 4e-30
 Identities = 72/102 (70%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE-IR 332
           ALAKYTQGFSGADITEICQRACKYAI                NP              IR
Sbjct: 677 ALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIR 736

Query: 331 AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 737 AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778

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>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  126 bits (317), Expect = 3e-29
 Identities = 68/101 (67%), Positives = 71/101 (70%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ALAKYTQGFSGADITEICQR+CKYAI                +P             I+A
Sbjct: 678 ALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAE-IKA 736

Query: 328 AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
            HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 737 GHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 777

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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score =  124 bits (311), Expect = 1e-28
 Identities = 68/102 (66%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE-IR 332
           ALA++TQGFSGADITEICQRACKYAI                NP              I+
Sbjct: 678 ALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIK 737

Query: 331 AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           AAHFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 738 AAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 779

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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score =  122 bits (306), Expect = 6e-28
 Identities = 67/101 (66%), Positives = 71/101 (70%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ALAK+TQGFSGAD+TEICQRACKYAI                NP             I+ 
Sbjct: 678 ALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEVPE-IKP 736

Query: 328 AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF
Sbjct: 737 AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRF 777

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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  103 bits (258), Expect = 2e-22
 Identities = 59/100 (59%), Positives = 64/100 (64%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LAK T GFSGAD+TEICQRACK AI                NP            EIR  
Sbjct: 674 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 733

Query: 325 HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 734 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 772

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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  103 bits (258), Expect = 2e-22
 Identities = 59/100 (59%), Positives = 64/100 (64%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LAK T GFSGAD+TEICQRACK AI                NP            EIR  
Sbjct: 674 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 733

Query: 325 HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 734 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 772

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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  103 bits (258), Expect = 2e-22
 Identities = 59/100 (59%), Positives = 64/100 (64%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LAK T GFSGAD+TEICQRACK AI                NP            EIR  
Sbjct: 674 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 733

Query: 325 HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 734 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 772

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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  103 bits (258), Expect = 2e-22
 Identities = 59/100 (59%), Positives = 64/100 (64%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LAK T GFSGAD+TEICQRACK AI                NP            EIR  
Sbjct: 674 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 733

Query: 325 HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 734 HFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 772

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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score =  102 bits (253), Expect = 8e-22
 Identities = 59/100 (59%), Positives = 63/100 (63%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LAK T GFSGAD+TEICQRACK AI                NP            EIR  
Sbjct: 675 LAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDPVPEIRRD 734

Query: 325 HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           HFEE+M+ ARRSVSD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 735 HFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773

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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 54/104 (51%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE---- 338
           LAK T GFSGAD+TEICQRACK AI                              +    
Sbjct: 682 LAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPE 741

Query: 337 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           I  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+F
Sbjct: 742 ITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 785

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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 54/104 (51%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE---- 338
           LAK T GFSGAD+TEICQRACK AI                              +    
Sbjct: 680 LAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPE 739

Query: 337 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
           I  AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+F
Sbjct: 740 ITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 783

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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
 Frame = -2

Query: 508  ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE--- 338
            A+AK TQGFSGAD+  I QRA KYAI                              +   
Sbjct: 684  AIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHEAEKEVKVEGEDVEMTDEGAKAEQ 743

Query: 337  ---------IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 206
                     I   HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG  S F F
Sbjct: 744  EPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNF 796

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>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE-IR 332
           A+AK T GFSGAD+  + QRA K AI                 P              ++
Sbjct: 693 AVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVVMDEDASVSQVQ 752

Query: 331 AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 227
             H EE+MK ARRSVSDA++R+Y+A+A  L  SRG
Sbjct: 753 RHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRG 787

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>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
 Frame = -2

Query: 505  LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXX----- 341
            +AK T+GFSGADIT +CQ A   AI                                   
Sbjct: 1130 MAKRTEGFSGADITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKIDDTDTYDP 1189

Query: 340  --EIRAAHFEESMKYARRSVSDADIRKYQAFAQTL 242
               +   HF+ + K AR S+   D+ KY+ F + L
Sbjct: 1190 VPTLSKKHFDLAFKNARISIQPEDVLKYEKFKEKL 1224

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>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297|
          Length = 733

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LA+ T+G+SGADI  +C+ A   AI                              +I   
Sbjct: 651 LAEKTEGYSGADIEAVCREAGMLAIRELIKPGM----------TREEAKEAAKKLKITKK 700

Query: 325 HFEESMKYARRSVSDADIRKYQ 260
           HFEE++K  R S++  D+ KY+
Sbjct: 701 HFEEALKKVRPSLTKEDVEKYE 722

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>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)|
          Length = 820

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 23/92 (25%), Positives = 37/92 (40%)
 Frame = -2

Query: 490 QGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEES 311
           +GFSGAD+  + Q+A   A+                +              I+  HFE++
Sbjct: 728 EGFSGADLAHLVQKATFQAV----------EEMIGSSESSEDDVTDITQCTIKTRHFEQA 777

Query: 310 MKYARRSVSDADIRKYQAFAQTLQQSRGFGSE 215
           +     SV+    R Y A +  LQ+S G  +E
Sbjct: 778 LSLVSPSVNKQQRRHYDALSTKLQESVGRNTE 809

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>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 42)
            (Ubiquitin-specific-processing protease 42)
            (Deubiquitinating enzyme 42)
          Length = 1325

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 217  RSRIHETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQPR 360
            R+ +HE       R G  GC      + H  S+PR+G P +L PH  R
Sbjct: 1085 RAGLHERPHKDHNR-GRRGCEPARERERHRPSSPRAGAPHALAPHPDR 1131

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>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           +A+ T+G+SGADIT IC+ A   A+                               +   
Sbjct: 406 IAEKTEGYSGADITNICRDASLMAM--------RRRINGLSPEEIRALSKEELQMPVTRG 457

Query: 325 HFEESMKYARRSVSDADIRKYQ 260
             E ++K   +SVS AD+ KY+
Sbjct: 458 DLELALKKIAKSVSAADLEKYE 479

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>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYA 434
           LA+ T GFSGADI  IC  A  +A
Sbjct: 509 LAELTPGFSGADIANICNEAALHA 532

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>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 490

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           +A+  +G+SGADIT +C+ A   A+                               +   
Sbjct: 408 IAEKIEGYSGADITNVCRDASLMAM--------RRRINGLSPEEIRALSKEELQMPVTKG 459

Query: 325 HFEESMKYARRSVSDADIRKYQ 260
            FE ++K   +SVS AD+ KY+
Sbjct: 460 DFELALKKIAKSVSAADLEKYE 481

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>SPAST_HUMAN (Q9UBP0) Spastin|
          Length = 616

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LA+ T G+SG+D+T + + A    I                 P             IR +
Sbjct: 537 LARMTDGYSGSDLTALAKDAALGPI-------------RELKPEQVKNMSASEMRNIRLS 583

Query: 325 HFEESMKYARRSVSDADIRKY 263
            F ES+K  +RSVS   +  Y
Sbjct: 584 DFTESLKKIKRSVSPQTLEAY 604

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>SPAST_MOUSE (Q9QYY8) Spastin|
          Length = 614

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           LA+ T G+SG+D+T + + A    I                 P             IR +
Sbjct: 535 LARMTDGYSGSDLTALAKDAALGPI-------------RELKPEQVKNMSASEMRNIRLS 581

Query: 325 HFEESMKYARRSVSDADIRKY 263
            F ES+K  +RSVS   +  Y
Sbjct: 582 DFTESLKKIKRSVSPQTLEAY 602

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>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/82 (26%), Positives = 33/82 (40%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           +A  T+G+SGADIT IC+ A   A+                               +   
Sbjct: 406 IADKTEGYSGADITNICRDASLMAM--------RRRINGLSPEEIRALSKEELQMPVTRG 457

Query: 325 HFEESMKYARRSVSDADIRKYQ 260
             E ++K   +SVS AD+ KY+
Sbjct: 458 DLELALKKIAKSVSAADLEKYE 479

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>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156|
          Length = 903

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAI 431
           LAK T+G++GADI  +C+ A   A+
Sbjct: 648 LAKKTEGYTGADIEALCREAAMLAV 672

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>KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin)
          Length = 491

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ++A+  +G+SGADIT +C+ A   A+                                  
Sbjct: 408 SIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHMPTT--------M 459

Query: 328 AHFEESMKYARRSVSDADIRKYQ 260
             FE ++K   +SVS ADI +Y+
Sbjct: 460 EDFEMALKKVSKSVSAADIERYE 482

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>KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin) (Lipotransin)
          Length = 491

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ++A+  +G+SGADIT +C+ A   A+                                  
Sbjct: 408 SIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAMHMPTT--------M 459

Query: 328 AHFEESMKYARRSVSDADIRKYQ 260
             FE ++K   +SVS ADI +Y+
Sbjct: 460 EDFEMALKKISKSVSAADIERYE 482

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>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin)
          Length = 491

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRA 329
           ++A+  +G+SGADIT +C+ A   A+                                  
Sbjct: 408 SIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTT--------M 459

Query: 328 AHFEESMKYARRSVSDADIRKYQ 260
             FE ++K   +SVS ADI +Y+
Sbjct: 460 EDFEMALKKVSKSVSAADIERYE 482

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAI 431
           L++ T+GFSGADI  +C  A   AI
Sbjct: 332 LSQLTEGFSGADIKNVCVEAAYMAI 356

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>CX017_HUMAN (Q9NX05) Protein CXorf17 (Tumor antigen BJ-HCC-21)|
          Length = 1096

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +1

Query: 241 AASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQPRPPPSLQG 381
           AA G   G  G  RH H+ AH        QP    P  P PPP L G
Sbjct: 70  AALGAYSGGAGPTRH-HHPAHHFHHHGQAQPGLHPPLPPPPPPQLPG 115

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAI 431
           LA+ T+G SGADI  IC  A  +AI
Sbjct: 339 LARITEGASGADIKAICTEAGMFAI 363

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAI 431
           LAK T+G SGADI  IC  A   AI
Sbjct: 377 LAKITEGASGADIKAICTEAGMMAI 401

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>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 232 ETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQ-P*SLQPHQPRPPPSL 375
           ET   S    GTC C + S   +   S    G+ P ++ P  P PPP L
Sbjct: 446 ETQTESEDCEGTCKCGQSSTKVSDNESAKEDGEKPHAVAPPPPPPPPPL 494

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>KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Fragment)
          Length = 486

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 326
           +A+   G+SGADIT +C+ A   A+                                   
Sbjct: 406 IAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMHMPTT--------ME 457

Query: 325 HFEESMKYARRSVSDADIRKYQ 260
            FE ++K   +SVS +DI KY+
Sbjct: 458 DFEMALKKVSKSVSASDIEKYE 479

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>ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein 1-B|
          Length = 362

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRA 446
           +AK T GFSG+D+ E+C+ A
Sbjct: 291 IAKQTDGFSGSDLREMCRDA 310

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>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like|
           protein)
          Length = 797

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYA 434
           LA  T GFSGAD+  +C  A   A
Sbjct: 509 LASLTPGFSGADVANVCNEAALIA 532

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>VPS5_SCHPO (Q9C0U7) Vacuolar protein sorting-associated protein vps5|
          Length = 576

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 229 HETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQP 357
           H  ++AS Q+ G+       +  AH ++ P+S  P  +Q H P
Sbjct: 167 HTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTPFYIQVHDP 209

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>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)|
          Length = 802

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYA 434
           LA  T GFSGAD+  +C  A   A
Sbjct: 508 LASLTPGFSGADVANVCNEAALIA 531

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>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein|
           RCA1 (EC 3.4.24.-) (TAT-binding homolog 12)
          Length = 825

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 505 LAKYTQGFSGADITEICQRACKYA 434
           LA  T GFSGADI  +C  A   A
Sbjct: 548 LAALTPGFSGADIANVCNEAALIA 571

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAI 431
           A+ K + GF+GAD+  +C  A  +AI
Sbjct: 330 AIVKLSDGFNGADLRNVCTEAGMFAI 355

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAI 431
           A+ K + GF+GAD+  +C  A  +AI
Sbjct: 330 AIVKLSDGFNGADLRNVCTEAGMFAI 355

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 508 ALAKYTQGFSGADITEICQRACKYAI 431
           A+ K + GF+GAD+  +C  A  +AI
Sbjct: 330 AIVKLSDGFNGADLRNVCTEAGMFAI 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,662,438
Number of Sequences: 219361
Number of extensions: 694024
Number of successful extensions: 2233
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result