ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15l16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483617.1| Oryza sativa (japonica cultivar-group), mRNA 198 7e-48
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 198 7e-48
3dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 198 7e-48
4dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 198 7e-48
5dbj|AK121240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 7e-48
6gb|AF325627.1| Setchelliogaster australiensis specimen-voucher C... 42 0.91
7gb|AF325626.1| Setchelliogaster australiensis specimen-voucher C... 42 0.91
8gb|AC026463.5| Homo sapiens chromosome 5 clone RP11-317I23, comp... 42 0.91
9gb|AC010386.5|AC010386 Homo sapiens chromosome 5 clone CTD-2074B... 42 0.91
10gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.6
11gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.6
12gb|AC117740.12| Mus musculus chromosome 8, clone RP24-134P12, co... 40 3.6
13emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.6
14gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 3.6
15gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.6 
>ref|XM_483617.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2527

 Score =  198 bits (100), Expect = 7e-48
 Identities = 133/144 (92%)
 Strand = Plus / Minus

                                                                        
Query: 134  ctacacttcgacggtcttctggttgagcgccgtgtacctccacctctccttctccacgaa 193
            |||||| || || ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 2306 ctacacctccaccgtcttctggttgagcgcggtgtacctccaccgctccttctccacgaa 2247

                                                                        
Query: 194  gtcggcgtccaagaacttggccacgaacgcccacagcttgtacgcgtcctcgaagttggt 253
             |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||
Sbjct: 2246 atcggcgtccaagaacttggccacgaacgcccacaacctgtaggcgtcgtcgaagttggt 2187

                                    
Query: 254  caagaaccccagcgacgcattcac 277
            |||||||||||||||||| |||||
Sbjct: 2186 caagaaccccagcgacgcgttcac 2163
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  198 bits (100), Expect = 7e-48
 Identities = 133/144 (92%)
 Strand = Plus / Plus

                                                                            
Query: 134      ctacacttcgacggtcttctggttgagcgccgtgtacctccacctctccttctccacgaa 193
                |||||| || || ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 27299891 ctacacctccaccgtcttctggttgagcgcggtgtacctccaccgctccttctccacgaa 27299950

                                                                            
Query: 194      gtcggcgtccaagaacttggccacgaacgcccacagcttgtacgcgtcctcgaagttggt 253
                 |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||
Sbjct: 27299951 atcggcgtccaagaacttggccacgaacgcccacaacctgtaggcgtcgtcgaagttggt 27300010

                                        
Query: 254      caagaaccccagcgacgcattcac 277
                |||||||||||||||||| |||||
Sbjct: 27300011 caagaaccccagcgacgcgttcac 27300034
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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0623F08
          Length = 154540

 Score =  198 bits (100), Expect = 7e-48
 Identities = 133/144 (92%)
 Strand = Plus / Plus

                                                                          
Query: 134    ctacacttcgacggtcttctggttgagcgccgtgtacctccacctctccttctccacgaa 193
              |||||| || || ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 123094 ctacacctccaccgtcttctggttgagcgcggtgtacctccaccgctccttctccacgaa 123153

                                                                          
Query: 194    gtcggcgtccaagaacttggccacgaacgcccacagcttgtacgcgtcctcgaagttggt 253
               |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||
Sbjct: 123154 atcggcgtccaagaacttggccacgaacgcccacaacctgtaggcgtcgtcgaagttggt 123213

                                      
Query: 254    caagaaccccagcgacgcattcac 277
              |||||||||||||||||| |||||
Sbjct: 123214 caagaaccccagcgacgcgttcac 123237
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1323_A06
          Length = 95665

 Score =  198 bits (100), Expect = 7e-48
 Identities = 133/144 (92%)
 Strand = Plus / Plus

                                                                        
Query: 134  ctacacttcgacggtcttctggttgagcgccgtgtacctccacctctccttctccacgaa 193
            |||||| || || ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1418 ctacacctccaccgtcttctggttgagcgcggtgtacctccaccgctccttctccacgaa 1477

                                                                        
Query: 194  gtcggcgtccaagaacttggccacgaacgcccacagcttgtacgcgtcctcgaagttggt 253
             |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||
Sbjct: 1478 atcggcgtccaagaacttggccacgaacgcccacaacctgtaggcgtcgtcgaagttggt 1537

                                    
Query: 254  caagaaccccagcgacgcattcac 277
            |||||||||||||||||| |||||
Sbjct: 1538 caagaaccccagcgacgcgttcac 1561
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>dbj|AK121240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097I24, full
            insert sequence
          Length = 2527

 Score =  198 bits (100), Expect = 7e-48
 Identities = 133/144 (92%)
 Strand = Plus / Minus

                                                                        
Query: 134  ctacacttcgacggtcttctggttgagcgccgtgtacctccacctctccttctccacgaa 193
            |||||| || || ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 2306 ctacacctccaccgtcttctggttgagcgcggtgtacctccaccgctccttctccacgaa 2247

                                                                        
Query: 194  gtcggcgtccaagaacttggccacgaacgcccacagcttgtacgcgtcctcgaagttggt 253
             |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||
Sbjct: 2246 atcggcgtccaagaacttggccacgaacgcccacaacctgtaggcgtcgtcgaagttggt 2187

                                    
Query: 254  caagaaccccagcgacgcattcac 277
            |||||||||||||||||| |||||
Sbjct: 2186 caagaaccccagcgacgcgttcac 2163
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>gb|AF325627.1| Setchelliogaster australiensis specimen-voucher Claridge 2679 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           28S ribosomal RNA gene, partial sequence
          Length = 663

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   gttctaaaagctttcagatgg 26
           |||||||||||||||||||||
Sbjct: 132 gttctaaaagctttcagatgg 112
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>gb|AF325626.1| Setchelliogaster australiensis specimen-voucher Claridge 2580 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           28S ribosomal RNA gene, partial sequence
          Length = 638

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   gttctaaaagctttcagatgg 26
           |||||||||||||||||||||
Sbjct: 129 gttctaaaagctttcagatgg 109
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>gb|AC026463.5| Homo sapiens chromosome 5 clone RP11-317I23, complete sequence
          Length = 169199

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   cctccacctctccttctccac 190
             |||||||||||||||||||||
Sbjct: 46954 cctccacctctccttctccac 46974
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>gb|AC010386.5|AC010386 Homo sapiens chromosome 5 clone CTD-2074B5, complete sequence
          Length = 101324

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   cctccacctctccttctccac 190
             |||||||||||||||||||||
Sbjct: 75055 cctccacctctccttctccac 75075
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 231     ttgtacgcgtcctcgaagttggtc 254
               |||||||||||||||| |||||||
Sbjct: 2915284 ttgtacgcgtcctcgacgttggtc 2915261
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 231     ttgtacgcgtcctcgaagttggtc 254
               |||||||||||||||| |||||||
Sbjct: 3957155 ttgtacgcgtcctcgacgttggtc 3957132
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>gb|AC117740.12| Mus musculus chromosome 8, clone RP24-134P12, complete sequence
          Length = 186401

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ctccacctctccttctccac 190
              ||||||||||||||||||||
Sbjct: 123870 ctccacctctccttctccac 123889
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 231     ttgtacgcgtcctcgaagttggtc 254
               |||||||||||||||| |||||||
Sbjct: 3699057 ttgtacgcgtcctcgacgttggtc 3699034
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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ctccacctctccttctccac 190
             ||||||||||||||||||||
Sbjct: 30884 ctccacctctccttctccac 30903
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 231     ttgtacgcgtcctcgaagttggtc 254
               |||||||||||||||| |||||||
Sbjct: 3398168 ttgtacgcgtcctcgacgttggtc 3398145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,226,399
Number of Sequences: 3902068
Number of extensions: 2226399
Number of successful extensions: 35191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35100
Number of HSP's gapped (non-prelim): 91
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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