ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal16a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475119.1| Oryza sativa (japonica cultivar-group), predic... 117 5e-23
2dbj|AK100115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
3gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
4gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6ref|NM_184007.1| Oryza sativa (japonica cultivar-group), predic... 46 0.14
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
8dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
9dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
10dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
11dbj|AK099063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
12dbj|AK062168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
13gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
14gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
15emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chrom... 44 0.54
16gb|AC096675.2| Homo sapiens chromosome 1 clone RP11-80N9, comple... 44 0.54
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
19dbj|AB033763.2| Staphylococcus aureus DNA, type-I staphylococcca... 42 2.1
20gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete ... 42 2.1
21gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 42 2.1
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, comple... 42 2.1
24dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
25dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 42 2.1
27gb|AY109470.1| Zea mays CL2102_5 mRNA sequence 42 2.1
28gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 42 2.1
29gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, com... 40 8.4
30gb|AE010310.1| Methanopyrus kandleri AV19 section 9 of 157 of th... 40 8.4
31gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, com... 40 8.4
32gb|AY380304.1|AY380304S1 Drosophila willistoni wingless (wg) gen... 40 8.4
33gb|AC121481.6| Rattus norvegicus NOVECTOR CH230-218J9 (Children... 40 8.4
34gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome... 40 8.4
35gb|AC140426.3| Mus musculus BAC clone RP24-98A17 from chromosome... 40 8.4
36gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, co... 40 8.4
37gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosom... 40 8.4
38emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chro... 40 8.4
39emb|CR847845.5| Zebrafish DNA sequence from clone DKEY-124I15 in... 40 8.4
40gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosom... 40 8.4
41gb|AC123051.4| Mus musculus BAC clone RP24-366E4 from chromosome... 40 8.4
42gb|AC125128.3| Mus musculus BAC clone RP24-289N17 from chromosom... 40 8.4
43gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosom... 40 8.4
44gb|AC124723.4| Mus musculus BAC clone RP23-396P3 from chromosome... 40 8.4
45gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome... 40 8.4
46ref|XM_650434.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.4
47gb|AC162035.5| Mus musculus chromosome 18, clone RP23-434N7, com... 40 8.4
48emb|AL160283.10| Human DNA sequence from clone RP11-317F9 on chr... 40 8.4
49gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's H... 40 8.4
50emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7... 40 8.4
51emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in... 40 8.4
52emb|AL645526.14| Mouse DNA sequence from clone RP23-60F20 on chr... 40 8.4
53gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, c... 40 8.4
54gb|AC090506.7| Homo sapiens chromosome 18, clone RP11-675P14, co... 40 8.4
55gb|BC105417.1| Bos taurus cDNA clone MGC:128482 IMAGE:7984532, c... 40 8.4
56gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map... 40 8.4
57gb|AC064800.8| Homo sapiens chromosome 18, clone CTD-2001I24, co... 40 8.4
58emb|AJ550456.1|HPY550456 Helicobacter pylori partial plg-bp gene... 40 8.4
59gb|AC104842.4| Homo sapiens BAC clone RP11-544D5 from 2, complet... 40 8.4
60gb|AF281267.1|AF281267 Euphausia krohni NADH dehydrogenase subun... 40 8.4
61gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome... 40 8.4
62gb|AF130241.1|AF130241 Oreoscoptes montanus cytochrome b gene, p... 40 8.4
63gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, compl... 40 8.4
64gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone... 40 8.4
65dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 8.4
66gb|AE001439.1| Helicobacter pylori J99, complete genome 40 8.4
67gb|U90647.1|FSU90647 Francolinus sephaena cytochrome b (cytb) ge... 40 8.4
68gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 8.4
69gb|AF014731.1|AF014731 Oryctolagus cuniculus clone N202 immunogl... 40 8.4
70emb|AL929344.8| Zebrafish DNA sequence from clone DKEYP-115D2, c... 40 8.4
71gb|U15206.1|EM15206 Epimachus meyeri mitochondrion cytochrome b ... 40 8.4
72dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.4
73dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.4
74emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chro... 40 8.4
75gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome... 40 8.4
76dbj|AB012938.1| Antirrhinum majus transposon Tam356 DNA, complet... 40 8.4
77dbj|AP002533.1| Homo sapiens genomic DNA, chromosome 1q22-q23, C... 40 8.4
78dbj|AB045359.1| Homo sapiens genomic DNA, chromosome 1q22-q23, c... 40 8.4 
>ref|XM_475119.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2175

 Score =  117 bits (59), Expect = 5e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 498  tcggcccaaaacatcactccacccctaaaagaagggaatcccattcccataatggatgct 557
            |||||||| ||||||||||| |||||  | |||||||| ||| | |||||||||||||||
Sbjct: 2024 tcggcccagaacatcactccgcccctgtaggaagggaagcccctccccataatggatgct 1965

                                                                        
Query: 558  acatcgaggtcagatgctttcaaagcaattccctcatcaagcactcggcaggcctcattc 617
            ||||| || ||||||||||||| |||||  ||||| ||||||| ||| ||||||||||||
Sbjct: 1964 acatcaagatcagatgctttcatagcaaccccctcgtcaagcagtcgacaggcctcattc 1905

               
Query: 618  acc 620
            |||
Sbjct: 1904 acc 1902
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>dbj|AK100115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O04, full
            insert sequence
          Length = 2501

 Score =  117 bits (59), Expect = 5e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 498  tcggcccaaaacatcactccacccctaaaagaagggaatcccattcccataatggatgct 557
            |||||||| ||||||||||| |||||  | |||||||| ||| | |||||||||||||||
Sbjct: 2128 tcggcccagaacatcactccgcccctgtaggaagggaagcccctccccataatggatgct 2069

                                                                        
Query: 558  acatcgaggtcagatgctttcaaagcaattccctcatcaagcactcggcaggcctcattc 617
            ||||| || ||||||||||||| |||||  ||||| ||||||| ||| ||||||||||||
Sbjct: 2068 acatcaagatcagatgctttcatagcaaccccctcgtcaagcagtcgacaggcctcattc 2009

               
Query: 618  acc 620
            |||
Sbjct: 2008 acc 2006
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>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
             complete sequence
          Length = 164064

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                         
Query: 528   gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 587
             |||||||| ||| | |||||||||||||||||||| || ||||||||||||| |||||  
Sbjct: 95579 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 95520

                                              
Query: 588   ccctcatcaagcactcggcaggcctcattcacc 620
             ||||| ||||||| ||| |||||||||||||||
Sbjct: 95519 ccctcgtcaagcagtcgacaggcctcattcacc 95487
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>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10,
              complete sequence
          Length = 148373

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                          
Query: 528    gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 587
              |||||||| ||| | |||||||||||||||||||| || ||||||||||||| |||||  
Sbjct: 144811 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 144752

                                               
Query: 588    ccctcatcaagcactcggcaggcctcattcacc 620
              ||||| ||||||| ||| |||||||||||||||
Sbjct: 144751 ccctcgtcaagcagtcgacaggcctcattcacc 144719
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                            
Query: 528      gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 587
                |||||||| ||| | |||||||||||||||||||| || ||||||||||||| |||||  
Sbjct: 17151444 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 17151385

                                                 
Query: 588      ccctcatcaagcactcggcaggcctcattcacc 620
                ||||| ||||||| ||| |||||||||||||||
Sbjct: 17151384 ccctcgtcaagcagtcgacaggcctcattcacc 17151352
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>ref|NM_184007.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2184

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 582  gcaattccctcatcaagcactcggcaggcctcatt 616
            ||||||||||||||||| || ||||| ||||||||
Sbjct: 1949 gcaattccctcatcaagaacacggcaagcctcatt 1915
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 582      gcaattccctcatcaagcactcggcaggcctcatt 616
                ||||||||||||||||| || ||||| ||||||||
Sbjct: 13875199 gcaattccctcatcaagaacacggcaagcctcatt 13875165
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1051E10
          Length = 207782

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 582   gcaattccctcatcaagcactcggcaggcctcatt 616
             ||||||||||||||||| || ||||| ||||||||
Sbjct: 35501 gcaattccctcatcaagaacacggcaagcctcatt 35467
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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0440D10
          Length = 144340

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 582    gcaattccctcatcaagcactcggcaggcctcatt 616
              ||||||||||||||||| || ||||| ||||||||
Sbjct: 112602 gcaattccctcatcaagaacacggcaagcctcatt 112568
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>dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D07, full
            insert sequence
          Length = 2677

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 582  gcaattccctcatcaagcactcggcaggcctcatt 616
            ||||||||||||||||| || ||||| ||||||||
Sbjct: 2165 gcaattccctcatcaagaacacggcaagcctcatt 2131
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>dbj|AK099063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157A11, full
           insert sequence
          Length = 941

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 582 gcaattccctcatcaagcactcggcaggcctcatt 616
           ||||||||||||||||| || ||||| ||||||||
Sbjct: 391 gcaattccctcatcaagaacacggcaagcctcatt 357
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>dbj|AK062168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B11, full
           insert sequence
          Length = 1148

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 582 gcaattccctcatcaagcactcggcaggcctcatt 616
           ||||||||||||||||| || ||||| ||||||||
Sbjct: 633 gcaattccctcatcaagaacacggcaagcctcatt 599
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>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0034E03 map near 50283S, complete sequence
          Length = 134074

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 254   tacatctaatatatgattgtat 275
             ||||||||||||||||||||||
Sbjct: 14301 tacatctaatatatgattgtat 14322
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>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041C22, complete sequence
          Length = 161172

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 254   tacatctaatatatgattgtat 275
             ||||||||||||||||||||||
Sbjct: 36296 tacatctaatatatgattgtat 36275
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>emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chromosome 1q32.1-32.3
              Contains the 5' end of the LRRN5 gene for leucine rich
              repeat neuronal 5 and a novel gene, complete sequence
          Length = 162345

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 501    gcccaaaacatcactccacccc 522
              ||||||||||||||||||||||
Sbjct: 144821 gcccaaaacatcactccacccc 144842
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>gb|AC096675.2| Homo sapiens chromosome 1 clone RP11-80N9, complete sequence
          Length = 170467

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 501   gcccaaaacatcactccacccc 522
             ||||||||||||||||||||||
Sbjct: 47199 gcccaaaacatcactccacccc 47220
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 254      tacatctaatatatgattgtat 275
                ||||||||||||||||||||||
Sbjct: 14812759 tacatctaatatatgattgtat 14812738
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 254      tacatctaatatatgattgtat 275
                ||||||||||||||||||||||
Sbjct: 14893197 tacatctaatatatgattgtat 14893176
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>dbj|AB033763.2| Staphylococcus aureus DNA, type-I staphylococccal cassette chromosome
             mec, strain:NCTC10442
          Length = 39332

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   attacgtacatctaatatatg 268
             |||||||||||||||||||||
Sbjct: 19395 attacgtacatctaatatatg 19375
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>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence
          Length = 116158

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 515   tccacccctaaaagaagggaa 535
             |||||||||||||||||||||
Sbjct: 62091 tccacccctaaaagaagggaa 62111
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   attacgtacatctaatatatg 268
             |||||||||||||||||||||
Sbjct: 53644 attacgtacatctaatatatg 53664
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 430      tgaagaactctccataatcct 450
                |||||||||||||||||||||
Sbjct: 15929931 tgaagaactctccataatcct 15929951
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>gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, complete sequence
          Length = 197425

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    tttgctgtgcactttattacg 253
              |||||||||||||||||||||
Sbjct: 157085 tttgctgtgcactttattacg 157065
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>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0027N13
          Length = 179669

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 430    tgaagaactctccataatcct 450
              |||||||||||||||||||||
Sbjct: 169445 tgaagaactctccataatcct 169465
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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 430   tgaagaactctccataatcct 450
             |||||||||||||||||||||
Sbjct: 11333 tgaagaactctccataatcct 11353
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     attacgtacatctaatatatg 268
               |||||||||||||||||||||
Sbjct: 2493169 attacgtacatctaatatatg 2493149
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>gb|AY109470.1| Zea mays CL2102_5 mRNA sequence
          Length = 1160

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 588 ccctcatcaagcactcggcaggcctcatt 616
           ||||||||||| ||||||||||| |||||
Sbjct: 371 ccctcatcaaggactcggcaggcttcatt 399
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    attacgtacatctaatatatg 268
              |||||||||||||||||||||
Sbjct: 124894 attacgtacatctaatatatg 124914
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>gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, complete sequence
          Length = 139356

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ctggacaaggcagaacacgg 333
              ||||||||||||||||||||
Sbjct: 111918 ctggacaaggcagaacacgg 111937
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>gb|AE010310.1| Methanopyrus kandleri AV19 section 9 of 157 of the complete genome
          Length = 11629

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 419 ttcacagggtttgaagaactctcc 442
           ||||||| ||||||||||||||||
Sbjct: 381 ttcacagagtttgaagaactctcc 358
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>gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, complete sequence
          Length = 175827

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   ctggacaaggcagaacacgg 333
             ||||||||||||||||||||
Sbjct: 18944 ctggacaaggcagaacacgg 18963
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>gb|AY380304.1|AY380304S1 Drosophila willistoni wingless (wg) gene, intron 1
          Length = 2210

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 176 aagaaaagaaaaaagccaca 195
           ||||||||||||||||||||
Sbjct: 382 aagaaaagaaaaaagccaca 401
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>gb|AC121481.6| Rattus norvegicus  NOVECTOR CH230-218J9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 236244

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   cgccatcggcagccaaggatgtgc 393
             |||||||| |||||||||||||||
Sbjct: 25476 cgccatcgccagccaaggatgtgc 25499
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>gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome 12, complete sequence
          Length = 216095

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 196852 agaagaaaagaaaaaagcca 196833
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>gb|AC140426.3| Mus musculus BAC clone RP24-98A17 from chromosome 14, complete sequence
          Length = 189282

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    cagggtttgaagaactctcc 442
              ||||||||||||||||||||
Sbjct: 145547 cagggtttgaagaactctcc 145528
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>gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, complete sequence
          Length = 207556

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   cagcagtttcagaagaaaagaaaa 187
             ||||||||||||| ||||||||||
Sbjct: 37841 cagcagtttcagaggaaaagaaaa 37818
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>gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosome 7, complete sequence
          Length = 217760

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    tttcagaagaaaagaaaaaa 189
              ||||||||||||||||||||
Sbjct: 188359 tttcagaagaaaagaaaaaa 188378
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>emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chromosome 7, complete
              sequence
          Length = 178646

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ttcagaagaaaagaaaaaag 190
              ||||||||||||||||||||
Sbjct: 148239 ttcagaagaaaagaaaaaag 148220
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>emb|CR847845.5| Zebrafish DNA sequence from clone DKEY-124I15 in linkage group 14,
             complete sequence
          Length = 26956

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   aagaaaaaagccacacccac 200
             ||||||||||||||||||||
Sbjct: 21578 aagaaaaaagccacacccac 21559
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>gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosome 7, complete sequence
          Length = 185617

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tttcagaagaaaagaaaaaa 189
              ||||||||||||||||||||
Sbjct: 180685 tttcagaagaaaagaaaaaa 180666
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>gb|AC123051.4| Mus musculus BAC clone RP24-366E4 from chromosome 6, complete sequence
          Length = 143909

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    cagcagtttcagaagaaaagaaaa 187
              ||||||||||||| ||||||||||
Sbjct: 110521 cagcagtttcagaggaaaagaaaa 110544
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>gb|AC125128.3| Mus musculus BAC clone RP24-289N17 from chromosome 14, complete
             sequence
          Length = 180645

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   cagggtttgaagaactctcc 442
             ||||||||||||||||||||
Sbjct: 22878 cagggtttgaagaactctcc 22859
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>gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosome 12, complete sequence
          Length = 176782

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 112588 agaagaaaagaaaaaagcca 112607
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>gb|AC124723.4| Mus musculus BAC clone RP23-396P3 from chromosome 14, complete sequence
          Length = 187353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   agaagaaaagaaaaaagcca 193
             ||||||||||||||||||||
Sbjct: 66742 agaagaaaagaaaaaagcca 66761
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>gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome 17, complete sequence
          Length = 126106

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   cacacccaccaacaatcaaa 211
             ||||||||||||||||||||
Sbjct: 93690 cacacccaccaacaatcaaa 93709
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>ref|XM_650434.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (27.t00034)
           partial mRNA
          Length = 2553

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 tcagaagaaaagaaaaaagc 191
           ||||||||||||||||||||
Sbjct: 154 tcagaagaaaagaaaaaagc 173
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>gb|AC162035.5| Mus musculus chromosome 18, clone RP23-434N7, complete sequence
          Length = 200472

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   tttcagaagaaaagaaaaaa 189
             ||||||||||||||||||||
Sbjct: 97478 tttcagaagaaaagaaaaaa 97497
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>emb|AL160283.10| Human DNA sequence from clone RP11-317F9 on chromosome 1q21.1-23.3
            Contains the OR6Y1 gene for olfactory receptor, family 6,
            subfamily Y, member 1, the OR6P1 gene for olfactory
            receptor, family 6, subfamily P, member 1 and the OR10X1
            gene for olfactory receptor, family 10, subfamily X,
            member 1, complete sequence
          Length = 38452

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 172  tcagaagaaaagaaaaaagccacaccca 199
            ||||||||||| ||||||||| ||||||
Sbjct: 3947 tcagaagaaaaaaaaaaagcctcaccca 3920
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>gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228330

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    tcagaagaaaagaaaaaagccaca 195
              |||||| |||||||||||||||||
Sbjct: 188284 tcagaaaaaaagaaaaaagccaca 188307
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>emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene,
             D7H11orf16 gene and C11orf17 gene
          Length = 234169

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tttcagaagaaaagaaaaaa 189
             ||||||||||||||||||||
Sbjct: 21288 tttcagaagaaaagaaaaaa 21269
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>emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in linkage group 13,
              complete sequence
          Length = 219709

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 229    catttttgctgtgcactttattacgtacatct 260
              |||||||||||  |||||||||| ||||||||
Sbjct: 212164 catttttgctggccactttattaggtacatct 212195
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>emb|AL645526.14| Mouse DNA sequence from clone RP23-60F20 on chromosome 11 Contains the 5'
              end of the Pemt gene for phosphatidylethanolamine
              N-methyltransferase, the 5' end of the Rai1 gene for
              retinoic acid induced 1, a novel gene (4930412M03Rik) and
              three CpG islands, complete sequence
          Length = 143708

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    gaaccattccagctcctgtc 297
              ||||||||||||||||||||
Sbjct: 131397 gaaccattccagctcctgtc 131378
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>gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, complete sequence
          Length = 97882

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   caccaacaatcaaaccaacc 217
             ||||||||||||||||||||
Sbjct: 59966 caccaacaatcaaaccaacc 59947
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>gb|AC090506.7| Homo sapiens chromosome 18, clone RP11-675P14, complete sequence
          Length = 188609

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    gcataaaatgggtacacgat 352
              ||||||||||||||||||||
Sbjct: 147426 gcataaaatgggtacacgat 147445
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>gb|BC105417.1| Bos taurus cDNA clone MGC:128482 IMAGE:7984532, complete cds
          Length = 3021

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ttcagaagaaaagaaaaaag 190
           ||||||||||||||||||||
Sbjct: 702 ttcagaagaaaagaaaaaag 721
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>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
             sequence
          Length = 97814

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tttcagaagaaaagaaaaaa 189
             ||||||||||||||||||||
Sbjct: 40813 tttcagaagaaaagaaaaaa 40794
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>gb|AC064800.8| Homo sapiens chromosome 18, clone CTD-2001I24, complete sequence
          Length = 131409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  caccaacaatcaaaccaacc 217
            ||||||||||||||||||||
Sbjct: 3754 caccaacaatcaaaccaacc 3735
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>emb|AJ550456.1|HPY550456 Helicobacter pylori partial plg-bp gene for plasminogen binding
            protein
          Length = 1344

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  agaagaaaagaaaaaagcca 193
            ||||||||||||||||||||
Sbjct: 1218 agaagaaaagaaaaaagcca 1237
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>gb|AC104842.4| Homo sapiens BAC clone RP11-544D5 from 2, complete sequence
          Length = 150622

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   gcagtttcagaagaaaagaa 185
             ||||||||||||||||||||
Sbjct: 89866 gcagtttcagaagaaaagaa 89885
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>gb|AF281267.1|AF281267 Euphausia krohni NADH dehydrogenase subunit 1 (ND1) gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 387

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 aaaaaagccacacccaccaa 203
           ||||||||||||||||||||
Sbjct: 56  aaaaaagccacacccaccaa 37
to top
>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence
          Length = 208058

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   agaagaaaagaaaaaagcca 193
             ||||||||||||||||||||
Sbjct: 14100 agaagaaaagaaaaaagcca 14081
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>gb|AF130241.1|AF130241 Oreoscoptes montanus cytochrome b gene, partial cds; mitochondrial
           gene for mitochondrial product
          Length = 433

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 agcaacacattacacagcag 166
           ||||||||||||||||||||
Sbjct: 58  agcaacacattacacagcag 77
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>gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, complete sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gaagaaaagaaaaaagccac 194
            ||||||||||||||||||||
Sbjct: 7650 gaagaaaagaaaaaagccac 7669
to top
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete
              sequence
          Length = 227682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    gaaccattccagctcctgtc 297
              ||||||||||||||||||||
Sbjct: 143226 gaaccattccagctcctgtc 143245
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 168     agtttcagaagaaaagaaaaaagc 191
               |||||||||||||| |||||||||
Sbjct: 2181116 agtttcagaagaaatgaaaaaagc 2181093
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 876700 agaagaaaagaaaaaagcca 876681



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 497592 agaagaaaagaaaaaagcca 497611
to top
>gb|U90647.1|FSU90647 Francolinus sephaena cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 660

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 agcaacacattacacagcag 166
           ||||||||||||||||||||
Sbjct: 27  agcaacacattacacagcag 46
to top
>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 915339 agaagaaaagaaaaaagcca 915320



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    agaagaaaagaaaaaagcca 193
              ||||||||||||||||||||
Sbjct: 535080 agaagaaaagaaaaaagcca 535099
to top
>gb|AF014731.1|AF014731 Oryctolagus cuniculus clone N202 immunoglobulin mu heavy chain VDJ
           region (IGHM) mRNA, partial sequence
          Length = 317

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 271 tgtatccgaaccattccagctcct 294
           ||||||||| ||||||||||||||
Sbjct: 148 tgtatccgatccattccagctcct 125
to top
>emb|AL929344.8| Zebrafish DNA sequence from clone DKEYP-115D2, complete sequence
          Length = 190898

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    aaaaaagccacacccaccaacaat 207
              ||||||||||||||| ||||||||
Sbjct: 159952 aaaaaagccacaccctccaacaat 159975
to top
>gb|U15206.1|EM15206 Epimachus meyeri mitochondrion cytochrome b gene, complete cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 agcaacacattacacagcag 166
           ||||||||||||||||||||
Sbjct: 156 agcaacacattacacagcag 175
to top
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tttcagaagaaaagaaaaaa 189
             ||||||||||||||||||||
Sbjct: 13464 tttcagaagaaaagaaaaaa 13445
to top
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
              complete sequence
          Length = 110985

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tttcagaagaaaagaaaaaa 189
              ||||||||||||||||||||
Sbjct: 101067 tttcagaagaaaagaaaaaa 101048
to top
>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete
              sequence
          Length = 189540

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    aagaccacagcaacacatta 158
              ||||||||||||||||||||
Sbjct: 125247 aagaccacagcaacacatta 125266
to top
>gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence
          Length = 222981

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   tttcagaagaaaagaaaaaa 189
             ||||||||||||||||||||
Sbjct: 26069 tttcagaagaaaagaaaaaa 26050
to top
>dbj|AB012938.1| Antirrhinum majus transposon Tam356 DNA, complete sequence
          Length = 1463

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 caccaacaatcaaaccaacc 217
           ||||||||||||||||||||
Sbjct: 221 caccaacaatcaaaccaacc 240
to top
>dbj|AP002533.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 2/4
          Length = 300000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 172   tcagaagaaaagaaaaaagccacaccca 199
             ||||||||||| ||||||||| ||||||
Sbjct: 76284 tcagaagaaaaaaaaaaagcctcaccca 76257
to top
>dbj|AB045359.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:456n8, complete
              sequence
          Length = 161318

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 172    tcagaagaaaagaaaaaagccacaccca 199
              ||||||||||| ||||||||| ||||||
Sbjct: 128807 tcagaagaaaaaaaaaaagcctcaccca 128780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,781,419
Number of Sequences: 3902068
Number of extensions: 6781419
Number of successful extensions: 181615
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181019
Number of HSP's gapped (non-prelim): 596
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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