>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 93.7 bits (47), Expect = 8e-16
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 499 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 558
||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 29067850 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 29067909
Query: 559 acc 561
|||
Sbjct: 29067910 acc 29067912
Score = 93.7 bits (47), Expect = 8e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 418 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 477
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 29067443 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 29067502
Query: 478 tcttcttcatt 488
|| ||||||||
Sbjct: 29067503 tcctcttcatt 29067513
Score = 89.7 bits (45), Expect = 1e-14
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 565 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 617
||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 29068210 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 29068262
Score = 77.8 bits (39), Expect = 5e-11
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 212 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 271
|||||||||| || ||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 29066714 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 29066773
Query: 272 cctgggcttcaaagcaagg 290
| ||||| |||||||||||
Sbjct: 29066774 cttgggcctcaaagcaagg 29066792
Score = 71.9 bits (36), Expect = 3e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 153 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 212
|||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 29066393 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 29066452
Score = 60.0 bits (30), Expect = 1e-05
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 622 cgaatgttccgaagggcggccagtagcataatacttggtgtctcca 667
||||||||||||||||| ||||| | ||||||||||||||| ||||
Sbjct: 29068385 cgaatgttccgaagggcagccagcaacataatacttggtgtttcca 29068430
Score = 56.0 bits (28), Expect = 2e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 tgacaataatggggagcagaagatcgctcccatcttccatcttgagcacgatagcatggt 727
|||| ||||| || |||| |||||| || |||||||||||||| || || ||||||||||
Sbjct: 29068518 tgacgataattggaagcaaaagatcacttccatcttccatcttcagaacaatagcatggt 29068577
Query: 728 gagg 731
||||
Sbjct: 29068578 gagg 29068581
Score = 42.1 bits (21), Expect = 2.6
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 305 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 364
|||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| |
Sbjct: 29066891 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 29066950
Query: 365 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 421
||| ||||||| || ||||| || || || ||| |||| ||||||||||||||||
Sbjct: 29066951 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 29067007
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0047E11
Length = 148109
Score = 93.7 bits (47), Expect = 8e-16
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 499 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 558
||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 112208 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 112267
Query: 559 acc 561
|||
Sbjct: 112268 acc 112270
Score = 93.7 bits (47), Expect = 8e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 418 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 477
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 111801 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 111860
Query: 478 tcttcttcatt 488
|| ||||||||
Sbjct: 111861 tcctcttcatt 111871
Score = 89.7 bits (45), Expect = 1e-14
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 565 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 617
||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 112568 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 112620
Score = 77.8 bits (39), Expect = 5e-11
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 212 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 271
|||||||||| || ||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 111072 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 111131
Query: 272 cctgggcttcaaagcaagg 290
| ||||| |||||||||||
Sbjct: 111132 cttgggcctcaaagcaagg 111150
Score = 71.9 bits (36), Expect = 3e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 153 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 212
|||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 110751 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 110810
Score = 60.0 bits (30), Expect = 1e-05
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 622 cgaatgttccgaagggcggccagtagcataatacttggtgtctcca 667
||||||||||||||||| ||||| | ||||||||||||||| ||||
Sbjct: 112743 cgaatgttccgaagggcagccagcaacataatacttggtgtttcca 112788
Score = 56.0 bits (28), Expect = 2e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 tgacaataatggggagcagaagatcgctcccatcttccatcttgagcacgatagcatggt 727
|||| ||||| || |||| |||||| || |||||||||||||| || || ||||||||||
Sbjct: 112876 tgacgataattggaagcaaaagatcacttccatcttccatcttcagaacaatagcatggt 112935
Query: 728 gagg 731
||||
Sbjct: 112936 gagg 112939
Score = 42.1 bits (21), Expect = 2.6
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 305 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 364
|||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| |
Sbjct: 111249 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 111308
Query: 365 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 421
||| ||||||| || ||||| || || || ||| |||| ||||||||||||||||
Sbjct: 111309 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 111365
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0421H07
Length = 158126
Score = 93.7 bits (47), Expect = 8e-16
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 499 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 558
||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 28216 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 28275
Query: 559 acc 561
|||
Sbjct: 28276 acc 28278
Score = 93.7 bits (47), Expect = 8e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 418 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 477
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 27809 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 27868
Query: 478 tcttcttcatt 488
|| ||||||||
Sbjct: 27869 tcctcttcatt 27879
Score = 89.7 bits (45), Expect = 1e-14
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 565 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 617
||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 28576 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 28628
Score = 77.8 bits (39), Expect = 5e-11
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 212 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 271
|||||||||| || ||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 27080 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 27139
Query: 272 cctgggcttcaaagcaagg 290
| ||||| |||||||||||
Sbjct: 27140 cttgggcctcaaagcaagg 27158
Score = 71.9 bits (36), Expect = 3e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 153 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 212
|||||| ||| |||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 26759 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 26818
Score = 60.0 bits (30), Expect = 1e-05
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 622 cgaatgttccgaagggcggccagtagcataatacttggtgtctcca 667
||||||||||||||||| ||||| | ||||||||||||||| ||||
Sbjct: 28751 cgaatgttccgaagggcagccagcaacataatacttggtgtttcca 28796
Score = 56.0 bits (28), Expect = 2e-04
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 tgacaataatggggagcagaagatcgctcccatcttccatcttgagcacgatagcatggt 727
|||| ||||| || |||| |||||| || |||||||||||||| || || ||||||||||
Sbjct: 28884 tgacgataattggaagcaaaagatcacttccatcttccatcttcagaacaatagcatggt 28943
Query: 728 gagg 731
||||
Sbjct: 28944 gagg 28947
Score = 42.1 bits (21), Expect = 2.6
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 305 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 364
|||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| |
Sbjct: 27257 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 27316
Query: 365 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 421
||| ||||||| || ||||| || || || ||| |||| ||||||||||||||||
Sbjct: 27317 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 27373
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence
Length = 220253
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 35 aggaaaaatattaaaagttac 55
|||||||||||||||||||||
Sbjct: 103106 aggaaaaatattaaaagttac 103086
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,481,735
Number of Sequences: 3902068
Number of extensions: 7481735
Number of successful extensions: 197178
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 197044
Number of HSP's gapped (non-prelim): 134
length of query: 737
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 714
effective length of database: 17,143,297,704
effective search space: 12240314560656
effective search space used: 12240314560656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)