| Clone Name | rbaal15j22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104220.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E01, full insert sequence Length = 993 Score = 262 bits (132), Expect = 1e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 760 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 701 Query: 166 ggtagtccttatcaagctgcttcagaaatcgtggaagcatgactcggagtaactgctcaa 225 ||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 700 ggtagtctttaacaagctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaa 641 Query: 226 gcacttgcctgccacttgattcaatagcttcaactggtagtgcttgaaacggaaagggaa 285 | |||||| |||||||||||||||| |||||||| |||| |||| |||| ||||| || | Sbjct: 640 gaacttgcttgccacttgattcaatggcttcaacaggtaatgctcgaaatggaaatggta 581 Query: 286 tgtcaattgcaacctcgattgtagcatccgatgtaagctgttga 329 | ||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 580 tatcaattgtaacctcgattgtagtatccgatgtaagctgttga 537 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagcggagaatttgtcattctgcgcctccacaa 411 |||||||||| ||| |||||||||||||||| || || |||||||| || |||||||||| Sbjct: 514 tgttgcagaacaccttattcaccatggaagctgaaaacttgtcattttgagcctccacaa 455 Query: 412 ggggcgacccctccagcttgcaggagaggaggcggatgcagcagccgttgggctcctcgt 471 | || || ||||| ||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 454 gcggtgatccctcgagcttgcaggagaggaggctaatacagcagccgttgggctcctcgt 395 Query: 472 cgacgcggacgaggaggacggggcagacctcgagcgcgaag 512 ||||||| || || || |||||||||||||||||||||||| Sbjct: 394 cgacgcgaacaagtagcacggggcagacctcgagcgcgaag 354
>dbj|AK104105.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C02, full insert sequence Length = 1008 Score = 262 bits (132), Expect = 1e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 780 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 721 Query: 166 ggtagtccttatcaagctgcttcagaaatcgtggaagcatgactcggagtaactgctcaa 225 ||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 720 ggtagtctttaacaagctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaa 661 Query: 226 gcacttgcctgccacttgattcaatagcttcaactggtagtgcttgaaacggaaagggaa 285 | |||||| |||||||||||||||| |||||||| |||| |||| |||| ||||| || | Sbjct: 660 gaacttgcttgccacttgattcaatggcttcaacaggtaatgctcgaaatggaaatggta 601 Query: 286 tgtcaattgcaacctcgattgtagcatccgatgtaagctgttga 329 | ||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 600 tatcaattgtaacctcgattgtagtatccgatgtaagctgttga 557 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagcggagaatttgtcattctgcgcctccacaa 411 |||||||||| ||| |||||||||||||||| || || |||||||| || |||||||||| Sbjct: 534 tgttgcagaacaccttattcaccatggaagctgaaaacttgtcattttgagcctccacaa 475 Query: 412 ggggcgacccctccagcttgcaggagaggaggcggatgcagcagccgttgggctcctcgt 471 | || || ||||| ||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 474 gcggtgatccctcgagcttgcaggagaggaggctaatacagcagccgttgggctcctcgt 415 Query: 472 cgacgcggacgaggaggacggggcagacctcgagcgcgaag 512 ||||||| || || || |||||||||||||||||||||||| Sbjct: 414 cgacgcgaacaagtagcacggggcagacctcgagcgcgaag 374
>dbj|AK071628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107C08, full insert sequence Length = 1205 Score = 262 bits (132), Expect = 1e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 972 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 913 Query: 166 ggtagtccttatcaagctgcttcagaaatcgtggaagcatgactcggagtaactgctcaa 225 ||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 912 ggtagtctttaacaagctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaa 853 Query: 226 gcacttgcctgccacttgattcaatagcttcaactggtagtgcttgaaacggaaagggaa 285 | |||||| |||||||||||||||| |||||||| |||| |||| |||| ||||| || | Sbjct: 852 gaacttgcttgccacttgattcaatggcttcaacaggtaatgctcgaaatggaaatggta 793 Query: 286 tgtcaattgcaacctcgattgtagcatccgatgtaagctgttga 329 | ||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 792 tatcaattgtaacctcgattgtagtatccgatgtaagctgttga 749 Score = 141 bits (71), Expect = 3e-30 Identities = 110/123 (89%) Strand = Plus / Minus Query: 390 ttgtcattctgcgcctccacaaggggcgacccctccagcttgcaggagaggaggcggatg 449 |||||||| || ||||||||||| || || ||||| ||||||||||||||||||| || Sbjct: 655 ttgtcattttgagcctccacaagcggtgatccctcgagcttgcaggagaggaggctaata 596 Query: 450 cagcagccgttgggctcctcgtcgacgcggacgaggaggacggggcagacctcgagcgcg 509 ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||| Sbjct: 595 cagcagccgttgggctcctcgtcgacgcgaacaagtagcacggggcagacctcgagcgcg 536 Query: 510 aag 512 ||| Sbjct: 535 aag 533 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagc 382 |||||||||| ||| |||||||||||||||| Sbjct: 726 tgttgcagaacaccttattcaccatggaagc 696
>dbj|AK059776.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A11, full insert sequence Length = 1084 Score = 262 bits (132), Expect = 1e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 760 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 701 Query: 166 ggtagtccttatcaagctgcttcagaaatcgtggaagcatgactcggagtaactgctcaa 225 ||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 700 ggtagtctttaacaagctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaa 641 Query: 226 gcacttgcctgccacttgattcaatagcttcaactggtagtgcttgaaacggaaagggaa 285 | |||||| |||||||||||||||| |||||||| |||| |||| |||| ||||| || | Sbjct: 640 gaacttgcttgccacttgattcaatggcttcaacaggtaatgctcgaaatggaaatggta 581 Query: 286 tgtcaattgcaacctcgattgtagcatccgatgtaagctgttga 329 | ||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 580 tatcaattgtaacctcgattgtagtatccgatgtaagctgttga 537 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagcggagaatttgtcattctgcgcctccacaa 411 |||||||||| ||| |||||||||||||||| || || |||||||| || |||||||||| Sbjct: 514 tgttgcagaacaccttattcaccatggaagctgaaaacttgtcattttgagcctccacaa 455 Query: 412 ggggcgacccctccagcttgcaggagaggaggcggatgcagcagccgttgggctcctcgt 471 | || || ||||| ||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 454 gcggtgatccctcgagcttgcaggagaggaggctaatacagcagccgttgggctcctcgt 395 Query: 472 cgacgcggacgaggaggacggggcagacctcgagcgcgaag 512 ||||||| || || || |||||||||||||||||||||||| Sbjct: 394 cgacgcgaacaagtagcacggggcagacctcgagcgcgaag 354
>ref|XM_470216.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 254 bits (128), Expect = 3e-64 Identities = 197/220 (89%) Strand = Plus / Minus Query: 110 tcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagcttggta 169 ||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||||||| Sbjct: 693 tcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgcttggta 634 Query: 170 gtccttatcaagctgcttcagaaatcgtggaagcatgactcggagtaactgctcaagcac 229 ||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 633 gtctttaacaagctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaagaac 574 Query: 230 ttgcctgccacttgattcaatagcttcaactggtagtgcttgaaacggaaagggaatgtc 289 |||| |||||||||||||||| |||||||| |||| |||| |||| ||||| || || || Sbjct: 573 ttgcttgccacttgattcaatggcttcaacaggtaatgctcgaaatggaaatggtatatc 514 Query: 290 aattgcaacctcgattgtagcatccgatgtaagctgttga 329 ||||| |||||||||||||| ||||||||||||||||||| Sbjct: 513 aattgtaacctcgattgtagtatccgatgtaagctgttga 474 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagcggagaatttgtcattctgcgcctccacaa 411 |||||||||| ||| |||||||||||||||| || || |||||||| || |||||||||| Sbjct: 451 tgttgcagaacaccttattcaccatggaagctgaaaacttgtcattttgagcctccacaa 392 Query: 412 ggggcgacccctccagcttgcaggagaggaggcggatgcagcagccgttgggctcctcgt 471 | || || ||||| ||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 391 gcggtgatccctcgagcttgcaggagaggaggctaatacagcagccgttgggctcctcgt 332 Query: 472 cgacgcggacgaggaggacggggcagacctcgagcgcgaag 512 ||||||| || || || |||||||||||||||||||||||| Sbjct: 331 cgacgcgaacaagtagcacggggcagacctcgagcgcgaag 291
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Minus Query: 182 ctgcttcagaaatcgtggaagcatgactcggagtaactgctcaagcacttgcctgccact 241 |||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| Sbjct: 2564382 ctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaagaacttgcttgccact 2564323 Query: 242 tgattcaatagcttcaactggtagtgcttgaaacggaaagggaatgtcaattgcaacct 300 ||||||||| |||||||| |||| |||| |||| ||||| || || ||||||| ||||| Sbjct: 2564322 tgattcaatggcttcaacaggtaatgctcgaaatggaaatggtatatcaattgtaacct 2564264 Score = 113 bits (57), Expect = 6e-22 Identities = 78/85 (91%) Strand = Plus / Minus Query: 428 cttgcaggagaggaggcggatgcagcagccgttgggctcctcgtcgacgcggacgaggag 487 ||||||||||||||||| || ||||||||||||||||||||||||||||| || || || Sbjct: 2563477 cttgcaggagaggaggctaatacagcagccgttgggctcctcgtcgacgcgaacaagtag 2563418 Query: 488 gacggggcagacctcgagcgcgaag 512 |||||||||||||||||||||||| Sbjct: 2563417 cacggggcagacctcgagcgcgaag 2563393 Score = 93.7 bits (47), Expect = 5e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 2564930 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 2564871 Query: 166 ggtagtccttatcaagctg 184 ||||||| ||| ||||||| Sbjct: 2564870 ggtagtctttaacaagctg 2564852 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 297 acctcgattgtagcatccgatgtaagctgttga 329 ||||||||||||| ||||||||||||||||||| Sbjct: 2564173 acctcgattgtagtatccgatgtaagctgttga 2564141 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagc 382 |||||||||| ||| |||||||||||||||| Sbjct: 2564118 tgttgcagaacaccttattcaccatggaagc 2564088
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 182 ctgcttcagaaatcgtggaagcatgactcggagtaactgctcaagcacttgcctgccact 241 |||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| Sbjct: 105712 ctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaagaacttgcttgccact 105771 Query: 242 tgattcaatagcttcaactggtagtgcttgaaacggaaagggaatgtcaattgcaacct 300 ||||||||| |||||||| |||| |||| |||| ||||| || || ||||||| ||||| Sbjct: 105772 tgattcaatggcttcaacaggtaatgctcgaaatggaaatggtatatcaattgtaacct 105830 Score = 113 bits (57), Expect = 6e-22 Identities = 78/85 (91%) Strand = Plus / Plus Query: 428 cttgcaggagaggaggcggatgcagcagccgttgggctcctcgtcgacgcggacgaggag 487 ||||||||||||||||| || ||||||||||||||||||||||||||||| || || || Sbjct: 106617 cttgcaggagaggaggctaatacagcagccgttgggctcctcgtcgacgcgaacaagtag 106676 Query: 488 gacggggcagacctcgagcgcgaag 512 |||||||||||||||||||||||| Sbjct: 106677 cacggggcagacctcgagcgcgaag 106701 Score = 93.7 bits (47), Expect = 5e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 105164 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 105223 Query: 166 ggtagtccttatcaagctg 184 ||||||| ||| ||||||| Sbjct: 105224 ggtagtctttaacaagctg 105242 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 297 acctcgattgtagcatccgatgtaagctgttga 329 ||||||||||||| ||||||||||||||||||| Sbjct: 105921 acctcgattgtagtatccgatgtaagctgttga 105953 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 352 tgttgcagaaaaccctattcaccatggaagc 382 |||||||||| ||| |||||||||||||||| Sbjct: 105976 tgttgcagaacaccttattcaccatggaagc 106006
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Minus Query: 182 ctgcttcagaaatcgtggaagcatgactcggagtaactgctcaagcacttgcctgccact 241 |||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| Sbjct: 2564492 ctgcttcaaaaatcgtggaagcatgactcggagtagttgctcaagaacttgcttgccact 2564433 Query: 242 tgattcaatagcttcaactggtagtgcttgaaacggaaagggaatgtcaattgcaacct 300 ||||||||| |||||||| |||| |||| |||| ||||| || || ||||||| ||||| Sbjct: 2564432 tgattcaatggcttcaacaggtaatgctcgaaatggaaatggtatatcaattgtaacct 2564374 Score = 113 bits (57), Expect = 6e-22 Identities = 78/85 (91%) Strand = Plus / Minus Query: 428 cttgcaggagaggaggcggatgcagcagccgttgggctcctcgtcgacgcggacgaggag 487 ||||||||||||||||| || ||||||||||||||||||||||||||||| || || || Sbjct: 2563587 cttgcaggagaggaggctaatacagcagccgttgggctcctcgtcgacgcgaacaagtag 2563528 Query: 488 gacggggcagacctcgagcgcgaag 512 |||||||||||||||||||||||| Sbjct: 2563527 cacggggcagacctcgagcgcgaag 2563503 Score = 93.7 bits (47), Expect = 5e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 106 agcttcatatttcgccggtgccaagcggtttccgtgaagaatcgcccgaagcccaagctt 165 ||||||||||||| || |||||||| ||||||| ||||||||| ||||||||||| |||| Sbjct: 2565040 agcttcatatttcaccagtgccaagtggtttccttgaagaatcacccgaagcccatgctt 2564981 Query: 166 ggtagtccttatcaagctg 184 ||||||| ||| ||||||| Sbjct: 2564980 ggtagtctttaacaagctg 2564962 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 297 acctcgattgtagcatccgatgtaagctgttga 329 ||||||||||||| ||||||||||||||||||| Sbjct: 2564283 acctcgattgtagtatccgatgtaagctgttga 2564251 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 352 tgttgcagaaaaccctattcaccatggaagc 382 |||||||||| ||| |||||||||||||||| Sbjct: 2564228 tgttgcagaacaccttattcaccatggaagc 2564198
>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete sequence Length = 176561 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 cccctccagcttgcaggagag 439 ||||||||||||||||||||| Sbjct: 85243 cccctccagcttgcaggagag 85223
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cggacgaggaggacggggcag 497 ||||||||||||||||||||| Sbjct: 857255 cggacgaggaggacggggcag 857235
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cggacgaggaggacggggcag 497 ||||||||||||||||||||| Sbjct: 526304 cggacgaggaggacggggcag 526284
>ref|NM_118209.2| Arabidopsis thaliana HEN1 (HUA ENHANCER 1) AT4G20910 (HEN1) mRNA, complete cds Length = 3125 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 712 cttcagaaatcgtggaagca 731
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 488 gacggggcagacctcgagcgcgaa 511 ||||||||||| |||||||||||| Sbjct: 1406924 gacggggcagagctcgagcgcgaa 1406901
>ref|NM_001001995.1| Homo sapiens glycoprotein M6B (GPM6B), transcript variant 1, mRNA Length = 3219 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1146 tatcatgaggaagtggatca 1127
>gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, complete sequence Length = 142874 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 aaagggaatgtcaattgcaa 297 |||||||||||||||||||| Sbjct: 63596 aaagggaatgtcaattgcaa 63577
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 cctcgtcgacgcggacgagg 485 |||||||||||||||||||| Sbjct: 965116 cctcgtcgacgcggacgagg 965135
>ref|XM_873129.1| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 8 (LOC516689), mRNA Length = 2942 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 907 tatcatgaggaagtggatca 888
>ref|XM_872935.1| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 6 (LOC516689), mRNA Length = 1214 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1082 tatcatgaggaagtggatca 1063
>ref|XM_872838.1| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 5 (LOC516689), mRNA Length = 3153 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1118 tatcatgaggaagtggatca 1099
>ref|XM_872746.1| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 4 (LOC516689), mRNA Length = 3177 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1142 tatcatgaggaagtggatca 1123
>ref|XM_594847.2| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 1 (LOC516689), mRNA Length = 1194 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1031 tatcatgaggaagtggatca 1012
>ref|XM_864183.1| PREDICTED: Bos taurus similar to Neuronal membrane glycoprotein M6-b (M6b), transcript variant 2 (LOC516689), mRNA Length = 3147 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1112 tatcatgaggaagtggatca 1093
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 agccgttgggctcctcgtcg 473 |||||||||||||||||||| Sbjct: 31674 agccgttgggctcctcgtcg 31693
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gtaactgctcaagcacttgc 233 |||||||||||||||||||| Sbjct: 2228377 gtaactgctcaagcacttgc 2228396
>gb|AY261360.1| African swine fever virus isolate Kenya 1950, complete genome Length = 193886 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 cagcttgcaggagaggaggcggat 448 ||||||||||||||||||| |||| Sbjct: 43711 cagcttgcaggagaggagggggat 43734
>gb|BC062787.1| Homo sapiens cDNA clone IMAGE:4762621, partial cds Length = 1077 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttgttgttgcagaaaaccct 367 |||||||||||||||||||| Sbjct: 438 ttgttgttgcagaaaaccct 457
>gb|BC012459.1| Homo sapiens cDNA clone IMAGE:3866417, **** WARNING: chimeric clone **** Length = 3540 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1544 tatcatgaggaagtggatca 1525
>gb|BC017122.2| Homo sapiens cDNA clone IMAGE:3921486, partial cds Length = 1082 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttgttgttgcagaaaaccct 367 |||||||||||||||||||| Sbjct: 443 ttgttgttgcagaaaaccct 462
>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence Length = 212485 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 actgctcaagcacttgcctgccac 240 ||||||| |||||||||||||||| Sbjct: 200940 actgctccagcacttgcctgccac 200917
>emb|Z81312.1|SPAC1F8 S.pombe chromosome I cosmid c1F8 Length = 26380 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 3276 caaacaagaaaacacaatcattac 3253
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 1314 cttcagaaatcgtggaagca 1295
>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53 Length = 197568 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 193882 cttcagaaatcgtggaagca 193863
>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project) Length = 91570 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 28836 cttcagaaatcgtggaagca 28817
>emb|CR847867.6| Human DNA sequence from clone WI2-1744J18 on chromosome 1, complete sequence Length = 23685 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttgttgttgcagaaaaccct 367 |||||||||||||||||||| Sbjct: 11685 ttgttgttgcagaaaaccct 11704
>emb|CR861445.1| Pongo pygmaeus mRNA; cDNA DKFZp459F212 (from clone DKFZp459F212) Length = 2910 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 839 tatcatgaggaagtggatca 820
>emb|CR859222.1| Pongo pygmaeus mRNA; cDNA DKFZp459E0431 (from clone DKFZp459E0431) Length = 3143 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1044 tatcatgaggaagtggatca 1025
>emb|CR859210.1| Pongo pygmaeus mRNA; cDNA DKFZp459M028 (from clone DKFZp459M028) Length = 3315 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1143 tatcatgaggaagtggatca 1124
>gb|DQ397638.1| Cenarchaeum symbiosum clone C16E09, complete sequence Length = 40387 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 cgcggacgaggaggacgggg 494 |||||||||||||||||||| Sbjct: 10237 cgcggacgaggaggacgggg 10256
>gb|DQ397615.1| Cenarchaeum symbiosum clone C20B09, complete sequence Length = 39122 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 cgcggacgaggaggacgggg 494 |||||||||||||||||||| Sbjct: 8774 cgcggacgaggaggacgggg 8755
>dbj|AK095657.1| Homo sapiens cDNA FLJ38338 fis, clone FCBBF3027104, highly similar to Mus musculus proteolipid M6B isoform alpha-beta-TMD-omega (M6B) mRNA Length = 3049 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1064 tatcatgaggaagtggatca 1045
>dbj|AK140714.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030010F23 product:glycoprotein m6b, full insert sequence Length = 2920 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 883 tatcatgaggaagtggatca 864
>gb|AF254871.1|AF254871 Mus musculus proteolipid M6B isoform TMD-omega (M6B) mRNA, complete cds Length = 2879 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 839 tatcatgaggaagtggatca 820
>gb|AF254870.1|AF254870 Mus musculus proteolipid M6B isoform alpha-beta-TMD-omega (M6B) mRNA, complete cds Length = 3224 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1184 tatcatgaggaagtggatca 1165
>gb|AF254869.1|AF254869 Mus musculus proteolipid M6B isoform alpha-TMD-omega (M6B) mRNA, complete cds Length = 3104 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 1064 tatcatgaggaagtggatca 1045
>gb|AF411383.1|AF411383 Arabidopsis thaliana HEN1 mRNA, complete cds Length = 3082 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 712 cttcagaaatcgtggaagca 731
>gb|S65737.1| membrane glycoprotein M6=major CNS myelin protein PLP/DM20 homolog {clone M6b} [mice, brain, mRNA, 1020 nt] Length = 1020 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 860 tatcatgaggaagtggatca 841
>ref|NM_001020970.1| Schizosaccharomyces pombe 972h- hexose transporter (SPBC1683.08), partial mRNA Length = 1674 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 1122 caaacaagaaaacacaatcattac 1099
>ref|NM_001018190.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC1F8.01), partial mRNA Length = 1668 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 1122 caaacaagaaaacacaatcattac 1099
>dbj|AK016567.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932442J20 product:glycoprotein m6b, full insert sequence Length = 2716 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 793 tatcatgaggaagtggatca 774
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 cgtcgacgcggacgaggaggacgg 492 ||||| |||||||||||||||||| Sbjct: 19522438 cgtcgccgcggacgaggaggacgg 19522461
>ref|XM_392266.2| PREDICTED: Apis mellifera similar to ENSANGP00000006371 (LOC408731), mRNA Length = 2694 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 cgacgcggacgaggaggacg 491 |||||||||||||||||||| Sbjct: 2301 cgacgcggacgaggaggacg 2282
>gb|AF327068.1|AF327068 Arabidopsis thaliana CORYMBOSA2 (CRM2) mRNA, complete cds Length = 3035 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 622 cttcagaaatcgtggaagca 641
>gb|AC090652.32| Mus musculus strain C57BL/6J chromosome 7 clone rp23-116a10, complete sequence Length = 228147 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 actgctcaagcacttgcctgccac 240 ||||||| |||||||||||||||| Sbjct: 189386 actgctccagcacttgcctgccac 189409
>gb|AF051140.1|AF051140 Schizosaccharomyces pombe putative glucose transporter protein (ght4) gene, complete cds Length = 1913 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 1361 caaacaagaaaacacaatcattac 1338
>gb|AF051139.1|AF051139 Schizosaccharomyces pombe putative glucose transporter protein (ght3) gene, complete cds Length = 2340 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 1176 caaacaagaaaacacaatcattac 1153
>dbj|AK120481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B17, full insert sequence Length = 579 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cacattaactagatcaaaca 68 |||||||||||||||||||| Sbjct: 479 cacattaactagatcaaaca 460
>dbj|AK130173.1| Homo sapiens cDNA FLJ26663 fis, clone MPG02628 Length = 3060 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttgttgttgcagaaaaccct 367 |||||||||||||||||||| Sbjct: 2539 ttgttgttgcagaaaaccct 2558
>gb|AF060248.1|AF060248 Arabidopsis thaliana pollenless3 (178) gene, complete cds; beta-9 tubulin (TUB9) gene, partial cds; and unknown gene Length = 7894 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cttcagaaatcgtggaagca 204 |||||||||||||||||||| Sbjct: 1904 cttcagaaatcgtggaagca 1923
>dbj|AK066993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F02, full insert sequence Length = 3411 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cacattaactagatcaaaca 68 |||||||||||||||||||| Sbjct: 511 cacattaactagatcaaaca 492
>emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 in linkage group 9, complete sequence Length = 211682 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatca 82 |||||||||||||||||||| Sbjct: 46157 caaacaagaaaacactatca 46138
>ref|NM_001012545.1| Gallus gallus glycoprotein M6B (GPM6B), mRNA Length = 1086 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 825 tatcatgaggaagtggatca 806
>emb|AL355920.1|SPBC1683 Schizosaccharomyces pombe cosmids c1683 Length = 41799 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 27599 caaacaagaaaacacaatcattac 27576
>gb|AY899805.1| Gallus gallus proteolipid GPM6B (GPM6B) mRNA, complete cds Length = 1086 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 825 tatcatgaggaagtggatca 806
>gb|AC087780.19| Mus musculus strain C57BL/6J chromosome 1 clone rp23-324b17, complete sequence Length = 206924 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ggacagactatcatgaggaa 32 |||||||||||||||||||| Sbjct: 55662 ggacagactatcatgaggaa 55681
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 cgtcgacgcggacgaggaggacgg 492 ||||| |||||||||||||||||| Sbjct: 19448651 cgtcgccgcggacgaggaggacgg 19448674
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 cgtcgacgcggacgaggaggacgg 492 ||||| |||||||||||||||||| Sbjct: 54619 cgtcgccgcggacgaggaggacgg 54642
>ref|NM_023122.1| Mus musculus glycoprotein m6b (Gpm6b), mRNA Length = 2879 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 839 tatcatgaggaagtggatca 820
>dbj|AB209525.1| Homo sapiens mRNA for glycoprotein M6B isoform 1 variant protein Length = 2780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tatcatgaggaagtggatca 40 |||||||||||||||||||| Sbjct: 711 tatcatgaggaagtggatca 692
>gb|U33010.1|SPU33010 Schizosaccharomyces pombe cosmids 359, 1198 and 1683 Length = 85837 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 45380 caaacaagaaaacacaatcattac 45357
>gb|U33009.1|SPU33009 Schizosaccharomyces pombe cosmid 1683 Length = 39305 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 caaacaagaaaacactatcattac 86 ||||||||||||||| |||||||| Sbjct: 24761 caaacaagaaaacacaatcattac 24738 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,543,152 Number of Sequences: 3902068 Number of extensions: 3543152 Number of successful extensions: 65402 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65096 Number of HSP's gapped (non-prelim): 306 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)