ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal15j11 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 47.4 bits (111), Expect = 5e-05 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Frame = -1 Query: 686 ILSLATLF-LWSNVCIFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTL 531 +LS+ F ++ V I KS P EV I E+L + S +N + L Sbjct: 1017 LLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKEL 1076 Query: 530 REIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 351 R + DL L +WV + +G+ N LTL + + L+++PV+YE++ ++D + Sbjct: 1077 RRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYL 1136 Query: 350 EKAMIELKKYYAIFEEKVLSKIPKGALKNK 261 A +K A K+ +KIP LK K Sbjct: 1137 GLANKSVKDAMA----KIQAKIP--GLKRK 1160
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 47.0 bits (110), Expect = 6e-05 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Frame = -1 Query: 686 ILSLATLF-LWSNVCIFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTL 531 +LS+ F ++ V I KS P EV I E+L + S +N + L Sbjct: 1018 LLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKEL 1077 Query: 530 REIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 351 R + DL L +WV + +G+ N LTL + + L+++PV+YE++ ++D + Sbjct: 1078 RRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHYL 1137 Query: 350 EKAMIELKKYYAIFEEKVLSKIPKGALKNK 261 A +K A K+ +KIP LK K Sbjct: 1138 GLANKSVKDAMA----KIQAKIP--GLKRK 1161
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 47.0 bits (110), Expect = 6e-05 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Frame = -1 Query: 686 ILSLATLF-LWSNVCIFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTL 531 +LS+ F ++ V I KS P EV I E+L + S +N + L Sbjct: 1047 LLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEL 1106 Query: 530 REIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 351 R + DL L +WV + +G+ N LTL + + L++VPV+YE++ ++D + Sbjct: 1107 RRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYL 1166 Query: 350 EKAMIELKKYYAIFEEKVLSKIPKGALKNK 261 A +K A K+ +KIP LK K Sbjct: 1167 GLANKNVKDAMA----KIQAKIP--GLKRK 1190
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 44.3 bits (103), Expect = 4e-04 Identities = 28/98 (28%), Positives = 53/98 (54%) Frame = -1 Query: 554 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 375 INR L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201 Query: 374 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 261 ++D + A + K EK+ +K+P G K K Sbjct: 202 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 234
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/98 (26%), Positives = 53/98 (54%) Frame = -1 Query: 554 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 375 +N+ L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 143 VNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY 202 Query: 374 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 261 ++D + A + K EK+ +K+P G K K Sbjct: 203 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 235
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 40.4 bits (93), Expect = 0.006 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = -1 Query: 611 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 432 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 431 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 282 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 40.4 bits (93), Expect = 0.006 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = -1 Query: 611 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 432 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 431 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 282 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 40.0 bits (92), Expect = 0.007 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = -1 Query: 611 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 432 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 668 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 727 Query: 431 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 282 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 728 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 773
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 40.0 bits (92), Expect = 0.007 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = -1 Query: 611 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 432 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 665 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 724 Query: 431 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 282 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 725 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 770
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 38.5 bits (88), Expect = 0.021 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 7/150 (4%) Frame = -1 Query: 710 LTLVGHCLILSLATLFLWSNVCIFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEI 552 L L+G C +SL ++ V +H+ P ++ + + T ++ + + Sbjct: 310 LALLGLCATISLR---VYRKVLQAVHRGDGTNPFQAYLDMDLTLTREQTERLSQQIASHV 366 Query: 551 NRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYD 372 LR DL L + ++L+ +G+ N LTL + V L+TVP+LY ++ Sbjct: 367 VSTATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQ 426 Query: 371 DKVDAFGEKAMIELKKYYAIFEEKVLSKIP 282 ++D + +L A K+ +KIP Sbjct: 427 AQIDQYVGLVTNQLSHIKA----KIRAKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 37.0 bits (84), Expect = 0.062 Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 16/169 (9%) Frame = -1 Query: 728 VMEYHLLTLVGHCLILSLA---TLFLWSNVCIFIHKSPPNIP-EVKIPEDLTVNIALS-- 567 ++ + ++++ H +L L +L ++ V +H+ P + + DLT+ + Sbjct: 371 LLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAVHRGDGANPFQAYLDVDLTLTREQTER 430 Query: 566 LRHEINRGLFTLREIGHGRDLKKFLIV---IGGL------WVLSVLGSCCNFLTLSYIVF 414 L H+I T R + L+ F +V + L ++L+ +G+ N LTL + Sbjct: 431 LSHQI-----TSRVVSAATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLLILGV 485 Query: 413 VVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP-KGAL 270 + L+T+P+LY ++ ++D + +L A K+ +KIP GAL Sbjct: 486 IGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIRAKIPGTGAL 530
>YL185_MIMIV (Q5URB5) Hypothetical protein L185| Length = 392 Score = 32.7 bits (73), Expect = 1.2 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 285 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQH 410 D DL+F + +ILL ++G +I++V ILL DS+QH Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL----DSIQH 184
>Y779_METJA (Q58189) Hypothetical protein MJ0779| Length = 299 Score = 32.0 bits (71), Expect = 2.0 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -1 Query: 563 RHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTL-SYIVFVVLYTVPVL 387 + I R + +++G D KKF++++ + + +L S LTL S I+FVV+Y L Sbjct: 10 KRTIKRNIILFKKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAAL 69 Query: 386 YEK---YDDKVD 360 + Y++K++ Sbjct: 70 FIPSILYENKIE 81
>SHCBP_MOUSE (Q9Z179) SHC SH2 domain-binding protein 1 (Protein expressed in| activated lymphocytes) (mPAL) (SHC-binding protein) Length = 668 Score = 32.0 bits (71), Expect = 2.0 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -1 Query: 584 VNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNF----LTLSYIV 417 V +A +E FTL + DLK+F + + LWV+S F L + ++ Sbjct: 142 VRLAEPCIYESKLSTFTLANVKELLDLKEFHLPLQELWVVS--DDSHEFHQMALAIEHVR 199 Query: 416 FVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLS 291 F + E+ +D+ D F L+ YY I E++V S Sbjct: 200 FFYKHIWRSWDEEEEDEYDYFVRCVEPRLRLYYDILEDRVPS 241
>Y1880_PYRFU (Q8TH04) UPF0278 protein PF1880| Length = 199 Score = 31.6 bits (70), Expect = 2.6 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -1 Query: 644 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 540 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 67 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 101
>Y393_PYRAB (Q9V1N4) UPF0278 protein PYRAB03930| Length = 204 Score = 31.6 bits (70), Expect = 2.6 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -1 Query: 644 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 540 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>Y1839_PYRHO (O59517) UPF0278 protein PH1839| Length = 204 Score = 31.6 bits (70), Expect = 2.6 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -1 Query: 644 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 540 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 974 Score = 30.8 bits (68), Expect = 4.5 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +3 Query: 306 FKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQHHKDYI 425 FK G++ + + + + +++ + L+ NWDS H +DY+ Sbjct: 710 FKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYV 749
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 30.4 bits (67), Expect = 5.8 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = -1 Query: 497 FLIVIGGLWVLSVL--GSCC--NFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 330 F++ IG + + L C F L +VF++ T+ VL+ Y DK+D++ ++ +L Sbjct: 63 FVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQ---DL 119 Query: 329 KK 324 KK Sbjct: 120 KK 121
>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor| (Legumin-like protein 1) [Contains: 13S globulin seed storage protein 1 acidic chain; 13S globulin seed storage protein 1 basic chain] Length = 565 Score = 30.0 bits (66), Expect = 7.6 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +1 Query: 28 PDRVTMLNVEK*AITKINTFQLA*LHFTKRSANHIYMY*YQVVLTRRQAQ*HRT--ILQN 201 P R + N I +N+ L L F + SA H+ +Y ++ R H + + Sbjct: 395 PSRADVFNPRAGRINTVNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALYVTRG 454 Query: 202 EGQVEINTDGG 234 EG+V++ D G Sbjct: 455 EGRVQVVGDEG 465
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 7.6 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +2 Query: 269 SKHPSGSSTGPSLQR----WHNTSSTRSWPSHQKHQPCHHTSHTELGQCTAPQ 415 + HPS SS+ S WH ++ + HQ++Q H TE T P+ Sbjct: 263 ASHPSSSSSSSSSSNPNSIWHTSTQQQQQQQHQQNQQNHWQMTTEPSFITKPR 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,136,856 Number of Sequences: 219361 Number of extensions: 1926186 Number of successful extensions: 5769 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5766 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
