ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6m08 |
|---|---|
| Clone Library Name | barley_pub |
>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor| Length = 569 Score = 261 bits (667), Expect = 9e-70 Identities = 119/141 (84%), Positives = 128/141 (90%) Frame = -1 Query: 546 AMAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFT 367 AMAGYLNKYGLI+WFSE VVK VGGLGLSWQ+SFGVLVL+YFYSHYFFASGAAHIGAMFT Sbjct: 429 AMAGYLNKYGLITWFSENVVKVVGGLGLSWQMSFGVLVLLYFYSHYFFASGAAHIGAMFT 488 Query: 366 AFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVIS 187 AFLSVASALGTPP AA+V+SFLSNLMGGLTHYGIGSAPVFYG YVPL +WWGY F+IS Sbjct: 489 AFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQWWGYGFLIS 548 Query: 186 VVNIIIWLGAGGFWWXMIGXW 124 +VN+IIWLG GG WW IG W Sbjct: 549 IVNLIIWLGVGGLWWKAIGLW 569
>YFLS_BACSU (O34726) Putative malate transporter yflS| Length = 478 Score = 175 bits (444), Expect = 7e-44 Identities = 72/140 (51%), Positives = 103/140 (73%) Frame = -1 Query: 543 MAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTA 364 +A +LN+ G++SWFS + V G SW ++F +L+++Y+YSHYFFAS AHI AM++A Sbjct: 341 LANFLNELGMVSWFSNAMKSSVSGF--SWIVAFIILIVVYYYSHYFFASATAHISAMYSA 398 Query: 363 FLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVISV 184 FL+V A G PPL AA+ ++F+SNL G THYG G+APVF+G GY+P +WW F++S+ Sbjct: 399 FLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSI 458 Query: 183 VNIIIWLGAGGFWWXMIGXW 124 V+II+WL GG WW ++G W Sbjct: 459 VHIIVWLVIGGLWWKVLGIW 478
>YBHI_ECOLI (P75763) Inner membrane protein ybhI| Length = 477 Score = 87.0 bits (214), Expect = 3e-17 Identities = 41/140 (29%), Positives = 73/140 (52%) Frame = -1 Query: 543 MAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTA 364 ++ L+K W +E + G ++F V++ + YFFASG+A+I AM Sbjct: 336 LSSLLSKVKFFEWLAEVFKNNLAFDGHG-NVAFFVIIFLSIIVRYFFASGSAYIVAMLPV 394 Query: 363 FLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVISV 184 F +A+ G P + A+ + F ++ G +THYG + PV +G GY + WW V+++ Sbjct: 395 FAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTI 454 Query: 183 VNIIIWLGAGGFWWXMIGXW 124 + ++ + G +WW M+ W Sbjct: 455 LTFLVHITLGVWWWNMLIGW 474
>Y020_HAEIN (Q57048) Hypothetical protein HI0020| Length = 479 Score = 82.8 bits (203), Expect = 6e-16 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%) Frame = -1 Query: 543 MAGYLNKYGLISWFSET---VVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAM 373 M+G L K G W + T +++F G ++ V++ + Y FASG A++ AM Sbjct: 338 MSGLLEKSGFFKWLANTLSTILQFEG----HGMMALIVILTLSVSVRYLFASGGAYVAAM 393 Query: 372 FTAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFV 193 F +V G P A+ + F ++ G +THYG G P+ +G GY + WW + Sbjct: 394 VPVFATVGHVTGAPTELLALGLVFANSYGGSVTHYGGGPGPIAFGAGYNDIKSWWITGAI 453 Query: 192 ISVVNIIIWLGAGGFWWXMI 133 I+ ++II L G WW ++ Sbjct: 454 IAFGSLIIHLTIGMAWWKLL 473
>CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citrate/succinate| antiporter) Length = 487 Score = 75.5 bits (184), Expect = 9e-14 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Frame = -1 Query: 543 MAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTA 364 MA L + G I WF+ T+ + G S + VLVL+++++HY FAS +AH M Sbjct: 351 MANGLTRSGFIDWFAGTMSTHLEGF--SPNATVIVLVLVFYFAHYLFASLSAHTATMLPV 408 Query: 363 FLSVASALGTPPLFAAMVMSFLS-NLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVIS 187 L+V + P+ ++ LS +MG LT Y G + YG GYV ++W + Sbjct: 409 ILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFG 468 Query: 186 VVNIIIWLGAGGFWWXMIGXW 124 V+ I + L G W ++ W Sbjct: 469 VIYISMLLLVG---WPILAMW 486
>CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citrate/succinate| antiporter) Length = 487 Score = 75.5 bits (184), Expect = 9e-14 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Frame = -1 Query: 543 MAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTA 364 MA L + G I WF+ T+ + G S + VLVL+++++HY FAS +AH M Sbjct: 351 MANGLTRSGFIDWFAGTMSTHLEGF--SPNATVIVLVLVFYFAHYLFASLSAHTATMLPV 408 Query: 363 FLSVASALGTPPLFAAMVMSFLS-NLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVIS 187 L+V + P+ ++ LS +MG LT Y G + YG GYV ++W + Sbjct: 409 ILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFG 468 Query: 186 VVNIIIWLGAGGFWWXMIGXW 124 V+ I + L G W ++ W Sbjct: 469 VIYISMLLLVG---WPILAMW 486
>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)| (Tartrate/succinate antiporter) Length = 487 Score = 71.6 bits (174), Expect = 1e-12 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 4/141 (2%) Frame = -1 Query: 543 MAGYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTA 364 +A LN G ISWF + + + G S + L+++++ YFFAS A+ A+ A Sbjct: 350 LATGLNNTGFISWFGKLLAGSLSGY--SPTMVMVALIVVFYLLRYFFASATAYTSAL--A 405 Query: 363 FLSVASALGTP----PLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXF 196 + +A+AL P P+F MV + + L LT Y G +P++YG GY+P A++W Sbjct: 406 PMMIAAALAMPEIPLPVFCLMVGAAIG-LGSILTPYATGPSPIYYGSGYLPTADYWRLGA 464 Query: 195 VISVVNIIIWLGAGGFWWXMI 133 + ++ +++ + G W ++ Sbjct: 465 IFGLIFLVLLVITGLLWMPVV 485
>Y608_HAEIN (Q57486) Hypothetical protein HI0608| Length = 461 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Frame = -1 Query: 444 GVLVLMYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYG 265 G+LV + F S A + F+S+A +LG P + A+++ ++ L Sbjct: 360 GLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLP--- 416 Query: 264 IGSAP--VFYGXGYVPLAEWWGYXFVISVVNIIIWLGAGGFWW 142 + + P + +G G V +E F++++V +++ G +W Sbjct: 417 VATPPNAIVFGSGQVKQSEMVKVGFLLNLVCVVVIATMGYMFW 459
>Y793_SYNY3 (Q55939) UPF0060 membrane protein sll0793| Length = 108 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/85 (23%), Positives = 34/85 (40%) Frame = -1 Query: 411 YFFASGAAHIGAMFTAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXG 232 YF +G IG + +L + ++ + + L G A YG Sbjct: 8 YFVMAGLCEIGGGYLVWLWIREGKSVWLALVRAILLTVYGFVATLQPANFGRAYAAYGGI 67 Query: 231 YVPLAEWWGYXFVISVVNIIIWLGA 157 ++ L+ WG+ VV+ + WLGA Sbjct: 68 FIILSIIWGWQVDNVVVDRLDWLGA 92
>NU5C_GERJA (P51100) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 744 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = -1 Query: 537 GYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFF 403 G N GL+S+F V+K VGG +S L F L +F Y+F Sbjct: 697 GIPNGVGLMSFFVAEVIKSVGGGRISSYLFFYFSYLSFFLLIYYF 741
>MOT2_RAT (Q63344) Monocarboxylate transporter 2 (MCT 2)| Length = 489 Score = 30.8 bits (68), Expect = 2.6 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Frame = -1 Query: 516 LISWFSETVVK------FVGGLGLSWQLSFGVLVL-MYFYSHYFFASGAAHIG------- 379 +++ FS +V++ F+GGLGL++ L + ++ YFY A+G A G Sbjct: 107 ILASFSSSVIELYLTVGFIGGLGLAFNLQPALTIIGKYFYRKRPLANGFAMAGSPVFLST 166 Query: 378 -AMFTAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAP 250 A F FL ++ G F + FL + + G +G +P Sbjct: 167 LAPFNQFL--FNSYGWKGSFLILGAIFLHSCVAGCLMRPVGPSP 208
>ZN408_HUMAN (Q9H9D4) Zinc finger protein 408 (PR-domain zinc finger protein 17)| Length = 720 Score = 30.4 bits (67), Expect = 3.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 388 THRSDVHCVPVCGKCLGHPSAFRCH 314 +H + H PVCGK L P R H Sbjct: 545 SHTGEAHLCPVCGKALRDPHTLRAH 569
>YICL_SALTY (O33787) Inner membrane transport protein yicL| Length = 300 Score = 30.4 bits (67), Expect = 3.4 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Frame = -1 Query: 510 SWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSH---YFFASGAAHI----------GAMF 370 +W S + ++ + W +SFG L+L+ FY+ +F SG+ + F Sbjct: 174 TWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTF 233 Query: 369 TAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAPVFYGXGYVPLAEWWGYXFVI 190 + +L A +G P LS+ + L GI L +W G ++ Sbjct: 234 SLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGIS----------FTLPDWLGTLLIL 283 Query: 189 SVVNII 172 S V +I Sbjct: 284 SSVILI 289
>RCEM_RHORU (P10718) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 305 Score = 30.4 bits (67), Expect = 3.4 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 13/98 (13%) Frame = -1 Query: 420 YSHYFFASGAAHIGAMFTAFLSVASALGTPPLFAAMVMSFLSNLMG---------GLTHY 268 +S++ G A IG ++ V S + FA ++ F NL+ G + Sbjct: 34 FSYWLGKIGDAQIGPIYLGTTGVLSLVFG--FFAIEIIGF--NLLASVNWSPMEFGRQFF 89 Query: 267 GIGSAP--VFYGXGYVPLAE--WWGYXFVISVVNIIIW 166 +G P YG G+ PLAE WW +I++W Sbjct: 90 WLGLEPPAAEYGLGFAPLAEGGWWQIAGFFLTTSILLW 127
>MCH1_ASHGO (Q752I1) Probable transporter MCH1| Length = 450 Score = 30.4 bits (67), Expect = 3.4 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Frame = -1 Query: 477 GGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTAFLSV---ASALGTPPLFAAMVM 307 G + LSW LSF V Y Y+ + FASG H A F + +AL LF A + Sbjct: 93 GPVMLSW-LSFVGFVPTYAYAAWVFASGEPHFYASVLCFTLIGISTNALYFSALFTASKL 151 Query: 306 ---SFLSNLMGGLTHYGIGS 256 S L ++ T YG+ S Sbjct: 152 YPASKLCSISLPATFYGMAS 171
>PO3F4_MESAU (Q812B1) POU domain, class 3, transcription factor 4| (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4) Length = 361 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Frame = +1 Query: 103 PHLLCFXPXTNHXPPEASSTKPDDDVNNGDDKXIAPPLSQRNIXRSIEXGG---*PYAIM 273 PH+ P TNH +S P+ + N + +E GG P A Sbjct: 99 PHVAHHSPHTNHPNAWGASPAPNSSITNSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAAS 158 Query: 274 GQATHEV*KE*HNHGSEKRRGAQGTCHRQERSEHRS 381 Q+ H V +E +HG G+ H Q+ S+ + Sbjct: 159 TQSLHPVLREPPDHGE------LGSHHCQDHSDEET 188
>GLGB_GLOIN (Q8NKE1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 683 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = -1 Query: 525 KYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTAFLSVAS 346 + G + F++ V+K + LG + + LM H ++AS G T+F V+S Sbjct: 197 RVGTYNEFTDNVLKRIKDLG------YNAIQLMAIMEHAYYAS----FGYQVTSFFGVSS 246 Query: 345 ALGTP 331 GTP Sbjct: 247 RYGTP 251
>NU5C_ATHGR (P51098) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 741 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Frame = -1 Query: 537 GYLNKYGLISWFSETVVKFVGGLGLSWQLSF-----GVLVLMYFYSHY 409 G N GL+S+F V+K VGG +S L F + +L+Y++ +Y Sbjct: 694 GIPNGVGLMSFFVAEVIKSVGGGRISSYLFFYFSYVSIFLLIYYFLNY 741
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -3 Query: 370 HCVPVCGKCLGHPSAFRCHGYVIPFKPHGWPDP 272 HC PVCGK GH S H + HG P P Sbjct: 149 HC-PVCGKAFGHGSLLAQH-----LRTHGGPRP 175
>RNFD_BUCAP (Q8KA19) Electron transport complex protein rnfD| Length = 349 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Frame = -1 Query: 432 LMYFYSHYFFASGAAHI---GAMFTAFLSVASALGTP-----PLFAAMVMSFLSNLMGGL 277 + YFYS FF S H+ G M AF + T +F +++ FL ++ Sbjct: 255 ITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFFGLIIGFLVWIIRNY 314 Query: 276 THYGIGSA-PVFYGXGYVPLAE 214 + Y G A V + VPL + Sbjct: 315 SDYPDGIAFSVLFANMIVPLMD 336
>TUB3_AGRVI (P70786) Putative tartrate transporter| Length = 449 Score = 29.3 bits (64), Expect = 7.6 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 17/111 (15%) Frame = -1 Query: 531 LNKYGLISWFSETVVK---------FVGGLGLSWQLSFGVLV--------LMYFYSHYFF 403 LNK G W + ++ FV G + L F + V ++ + S +F Sbjct: 92 LNKVGARIWIARVMITWGIVSGLMAFVQGTTSFYILRFLLGVAEAGFFPGIILYLSFWFP 151 Query: 402 ASGAAHIGAMFTAFLSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIGSAP 250 A A + A+F A +++ LG+P A M M L L G + I +AP Sbjct: 152 ARRRAAVTALFMAAAPLSTVLGSPISGALMEMHGLMGLAGWQWMFLIEAAP 202
>NU5C_ASTCO (P51097) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 741 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -1 Query: 537 GYLNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLMYFYSHYFF 403 G N GLIS+F V+K VGG +S L F + F Y+F Sbjct: 694 GIPNGVGLISFFVAEVIKSVGGGRISSYLFFYFSYVSIFLVIYYF 738
>PSTA2_MYCTU (P0A626) Phosphate transport system permease protein pstA-2| Length = 301 Score = 29.3 bits (64), Expect = 7.6 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Frame = -1 Query: 522 YGLISWFSETVVKFVGGLGL------SWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTAF 361 Y ++S V+ +VG L L + L+ GVLVL Y + + + + T++ Sbjct: 124 YEVLSGIPSIVLGYVGYLALVVYFDWGFSLAAGVLVLSVMSIPYIAKATESALAQVPTSY 183 Query: 360 LSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIG-------SAPVFYGXGY 229 A ALG P +A + + + G +T + +AP+ Y G+ Sbjct: 184 REAAEALGLPAGWALRKIVLKTAMPGIVTGMLVALALAIGETAPLLYTAGW 234
>PSTA2_MYCBO (P0A627) Phosphate transport system permease protein pstA-2| Length = 301 Score = 29.3 bits (64), Expect = 7.6 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Frame = -1 Query: 522 YGLISWFSETVVKFVGGLGL------SWQLSFGVLVLMYFYSHYFFASGAAHIGAMFTAF 361 Y ++S V+ +VG L L + L+ GVLVL Y + + + + T++ Sbjct: 124 YEVLSGIPSIVLGYVGYLALVVYFDWGFSLAAGVLVLSVMSIPYIAKATESALAQVPTSY 183 Query: 360 LSVASALGTPPLFAAMVMSFLSNLMGGLTHYGIG-------SAPVFYGXGY 229 A ALG P +A + + + G +T + +AP+ Y G+ Sbjct: 184 REAAEALGLPAGWALRKIVLKTAMPGIVTGMLVALALAIGETAPLLYTAGW 234
>MOT2_MOUSE (O70451) Monocarboxylate transporter 2 (MCT 2)| Length = 484 Score = 29.3 bits (64), Expect = 7.6 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Frame = -1 Query: 489 VKFVGGLGLSWQLSFGVLVL-MYFYSHYFFASGAAHIGAMFTAFLSVASAL--------G 337 V F+GGLGL++ L + ++ YFY A+G A G+ FLS + G Sbjct: 117 VGFIGGLGLAFNLQPALTIIGKYFYRRRPLANGCAMAGS--PVFLSTLAPFNQYLFNNYG 174 Query: 336 TPPLFAAMVMSFLSNLMGGLTHYGIGSAP 250 F + FL + + G +G +P Sbjct: 175 WKGSFLILGGIFLHSCVAGCLMRPVGPSP 203
>CEND3_MOUSE (Q8R5G7) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin| repeat and pleckstrin homology domain-containing protein 3) (Dual specificity Rho- and Arf-GTPase-activating protein 1) Length = 1538 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +1 Query: 316 GSEKRRGAQGTCHRQERSEHRSDVCSTTSKEVVGVEVHXHQYTE*ELPGQT 468 G+ RR +G C QER+EHR D+ ++E G Y ELPG + Sbjct: 214 GASDRRDGRGVC--QERAEHRQDL---ETREDAG-------YASLELPGDS 252
>PSBC_GUITH (O78426) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 10/40 (25%) Frame = -1 Query: 234 GYVPLAEWWGYXFVISVVNI------IIWLG----AGGFW 145 GYV + W G +++SV N+ IW+G AGGFW Sbjct: 211 GYVLKSPWGGDGWIVSVNNMEDVVGGHIWIGFTCIAGGFW 250
>PO3F4_HUMAN (P49335) POU domain, class 3, transcription factor 4| (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4) Length = 361 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Frame = +1 Query: 103 PHLLCFXPXTNHXPPEASSTKPDDDVNNGDDKXIAPPLSQRNIXRSIEXGG---*PYAIM 273 PH+ P TNH +S P+ + + + +E GG P A Sbjct: 99 PHVAHHSPHTNHPNAWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAAS 158 Query: 274 GQATHEV*KE*HNHGSEKRRGAQGTCHRQERSEHRS 381 Q+ H V +E +HG G+ H Q+ S+ + Sbjct: 159 AQSLHPVLREPPDHGE------LGSHHCQDHSDEET 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,491,459 Number of Sequences: 219361 Number of extensions: 1564493 Number of successful extensions: 4448 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4438 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
