Clone Name	rbaal15i12
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1203	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	975	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	975	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	761	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	743	0.0
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	658	0.0
7	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	535	e-149
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	515	e-143
9	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	8e-28
10	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	8e-28
11	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	133	8e-28
12	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
13	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
14	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
15	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
16	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
17	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	133	8e-28
18	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	8e-28
19	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	131	3e-27
20	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	129	1e-26
21	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	129	1e-26
22	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
23	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	129	1e-26
24	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	107	5e-20
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	7e-19
28	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	5e-17
29	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
30	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
32	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	90	1e-14
33	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	88	4e-14
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
36	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
37	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	70	1e-08
38	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	70	1e-08
39	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	70	1e-08
40	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	70	1e-08
41	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	70	1e-08
42	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	70	1e-08
43	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	70	1e-08
44	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	70	1e-08
45	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	70	1e-08
46	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	70	1e-08
47	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
48	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	64	6e-07
49	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
50	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	64	6e-07
51	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	1e-05
52	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	58	4e-05
53	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	2e-04
54	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	54	6e-04
55	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	54	6e-04
56	emb|Y10657.1|CLRCAGENE C.littorale rca gene	50	0.010
57	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	48	0.038
58	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	46	0.15
59	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	46	0.15
60	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	46	0.15
61	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	46	0.15
62	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	46	0.15
63	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	44	0.59
64	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.59
65	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.59
66	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	44	0.59
67	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.59
68	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.3
69	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	42	2.3
70	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.3
71	emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chr...	42	2.3
72	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.3
73	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
74	gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 f...	42	2.3
75	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.3
76	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	42	2.3
77	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
78	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.3
79	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.3
80	gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet...	40	9.2
81	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	9.2
82	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	9.2
83	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	9.2
84	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	9.2
85	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	9.2
86	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	9.2
87	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	9.2
88	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	9.2
89	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	9.2
90	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	9.2
91	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	9.2
92	emb|AL049563.4|HS68D15 Human DNA sequence from clone RP1-68D15 o...	40	9.2
93	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	9.2
94	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	9.2
95	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	9.2
96	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	9.2
97	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	9.2
98	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	9.2
99	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	9.2
100	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	9.2
101	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	40	9.2
102	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	9.2
103	gb|AC093634.3| Homo sapiens BAC clone RP11-168E14 from 4, comple...	40	9.2
104	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	9.2
105	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	9.2
106	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	9.2
107	emb|BX548013.3| Mouse DNA sequence from clone RP23-452C18 on chr...	40	9.2
108	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	9.2

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1203 bits (607), Expect = 0.0
 Identities = 650/658 (98%), Gaps = 5/658 (0%)
 Strand = Plus / Minus

                                                                        
Query: 17   tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 77   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagcgtgcc 135
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagc-tgcc 1566

                                                                        
Query: 136  gt-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 194
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 gttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1506

                                                                        
Query: 195  gca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtg 253
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 gcatcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtg 1446

                                                                        
Query: 254  ggtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggtta 312
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 ggtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggtta 1386

                                                                        
Query: 313  gcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 gcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 1326

                                                                        
Query: 373  tcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggc 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggc 1266

                                                                        
Query: 433  tgctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgatt 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tgctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgatt 1206

                                                                        
Query: 493  ccggtagagccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccg 552
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1205 ccggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccg 1146

                                                                        
Query: 553  aaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactg 612
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 1145 aaaaagtcaatggattgtcctgggaaggtgtcgacgatctttacgacagactcgtcacag 1086

                                                                      
Query: 613  acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 1028

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  975 bits (492), Expect = 0.0
 Identities = 614/651 (94%), Gaps = 8/651 (1%)
 Strand = Plus / Minus

                                                                       
Query: 26  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 80  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagcgtgccgtcg 139
           | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagc-tgccgtcg 629

                                                                       
Query: 140 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 199
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                       
Query: 200 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 259
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                                                       
Query: 260 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 319
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449

                                                                       
Query: 320 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389

                                                                       
Query: 380 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 439
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 388 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 329

                                                                       
Query: 440 aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 499
           ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 328 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 269

                                                                       
Query: 500 agccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagt 559
           ||   ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 268 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 209

                                                                       
Query: 560 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 619
           | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 208 cgatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgt 149

                                                              
Query: 620 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 148 cggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggag 98

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  975 bits (492), Expect = 0.0
 Identities = 614/651 (94%), Gaps = 8/651 (1%)
 Strand = Plus / Minus

                                                                        
Query: 26   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 79
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 80   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagcgtgccgtcg 139
            | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagc-tgccgtcg 1479

                                                                        
Query: 140  tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 199
            || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 1478 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 1419

                                                                        
Query: 200  ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 259
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 1359

                                                                        
Query: 260  tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 319
            |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1358 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 1299

                                                                        
Query: 320  ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 1239

                                                                        
Query: 380  cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 439
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1238 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 1179

                                                                        
Query: 440  aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 499
            ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1178 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 1119

                                                                        
Query: 500  agccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagt 559
            ||   ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 1118 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 1059

                                                                        
Query: 560  caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 619
            | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 1058 cgatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgt 999

                                                               
Query: 620  cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
            |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 998  cggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggag 948

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  761 bits (384), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                        
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 336  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 396  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                                                                        
Query: 456  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928

                                                                        
Query: 516  cacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 575
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868

                                                                        
Query: 576  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 635
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 867  gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808

                                               
Query: 636  cttgcagacaccgatacggtcgtcacgggtgggag 670
            |||||||||||||||||||||||||||||||||||
Sbjct: 807  cttgcagacaccgatacggtcgtcacgggtgggag 773



 Score =  414 bits (209), Expect = e-112
 Identities = 226/229 (98%), Gaps = 2/229 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatact-aatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 59
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 60   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 120  gtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggt 179
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagc-tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggt 1214

                                                             
Query: 180  cggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 228
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 cggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  743 bits (375), Expect = 0.0
 Identities = 574/636 (90%), Gaps = 10/636 (1%)
 Strand = Plus / Minus

                                                                        
Query: 40   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 93
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 94   -tattaaaagtggcatgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccg 152
             || | |||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgcgg 1475

                                                                        
Query: 153  ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacctt 212
            |||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| ||||
Sbjct: 1474 ttgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgcctt 1415

                                                                        
Query: 213  gctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatttt 272
            | ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||
Sbjct: 1414 gttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgtt 1357

                                                                        
Query: 273  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 332
            ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct: 1356 ctaaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctg 1297

                                                                        
Query: 333  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 392
            ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1296 gctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcat 1237

                                                                        
Query: 393  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 452
            ||| |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||
Sbjct: 1236 gtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtcc 1177

                                                                        
Query: 453  gtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccactt 512
            ||||||||||||||||||||||||||| |||||||| |||||||| ||    ||||||||
Sbjct: 1176 gtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccactt 1117

                                                                        
Query: 513  gcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcc 572
            |||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 1116 gcgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcc 1057

                                                                        
Query: 573  tgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagat 632
            |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1056 tgggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagat 997

                                                
Query: 633  acccttgcagacaccgatacggtcgtcacgggtggg 668
            |||||||||||| ||||||||||| || ||||||||
Sbjct: 996  acccttgcagacgccgatacggtcctcgcgggtggg 961

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  658 bits (332), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                        
Query: 226  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 286  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 346  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                        
Query: 406  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116

                                                                        
Query: 466  accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056

                                               
Query: 526  tngtacacccgagcacgcagagcaccgaaaaagtc 560
            | |||||||||||||||||||||||||||||||||
Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score =  418 bits (211), Expect = e-113
 Identities = 228/231 (98%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatgggtatact-aatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 59
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 60   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                                        
Query: 120  gtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggt 179
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagc-tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggt 7574

                                                               
Query: 180  cggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 230
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7573 cggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  220 bits (111), Expect = 5e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                        
Query: 560  caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821

                                                               
Query: 620  cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 6770



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 137/168 (81%)
 Strand = Plus / Minus

                                                                        
Query: 501  gccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtc 560
            ||||||||||||||||||||| |||| ||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                                                        
Query: 561  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 620
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693

                                                            
Query: 621  ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 668
            |||  ||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 3645



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 412  ttctcgactgtcatctttggctgctcgaa 440
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  535 bits (270), Expect = e-149
 Identities = 362/393 (92%)
 Strand = Plus / Minus

                                                                        
Query: 276  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 335
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 336  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 395
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 396  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 455
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                                                                        
Query: 456  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 515
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124

                                                                        
Query: 516  cacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 575
            |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064

                                                                        
Query: 576  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 635
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004

                                             
Query: 636  cttgcagacaccgatacggtcgtcacgggtggg 668
            ||||||||| ||||||||||| || ||||||||
Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtggg 971



 Score =  163 bits (82), Expect = 9e-37
 Identities = 119/130 (91%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 99   aaagtggcatgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggt 158
            |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgcggttgggt 1431

                                                                        
Query: 159  cgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtg 218
            || ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct: 1430 cgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtg 1371

                      
Query: 219  ctcctttacc 228
            ||||||||||
Sbjct: 1370 ctcctttacc 1361

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  515 bits (260), Expect = e-143
 Identities = 295/307 (96%)
 Strand = Plus / Minus

                                                                       
Query: 254 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 313
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 314 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 374 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                                                       
Query: 434 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 493
           |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69

                                                                       
Query: 494 cggtagagccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccga 553
           ||||||||   ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 68  cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9

                  
Query: 554 aaaagtc 560
           |||||||
Sbjct: 8   aaaagtc 2

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 966  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 921



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1462

                                                
Query: 168  tggcattttggtcggtgcaaccttccggcacgggca 203
            |||||    |||||||||||||||||||||| ||||
Sbjct: 1461 tggcaacagggtcggtgcaaccttccggcacaggca 1426

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 961  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 916



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1372

                                                
Query: 168  tggcattttggtcggtgcaaccttccggcacgggca 203
            |||||    |||||||||||||||||||||| ||||
Sbjct: 1371 tggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 336
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 337  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 396
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                                        
Query: 397  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 456
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130

                                            
Query: 457  cgcgagttcaccagcctcttgccaatgttctc 488
            | ||||||||||||||||||||||||||||||
Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                       
Query: 505 acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
           ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                                                       
Query: 565 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216

                                                         
Query: 625 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
            ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 170



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 335 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                                       
Query: 395 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386

                                             
Query: 455 cccgcgagttcaccagcctcttgccaatgttctc 488
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 964



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  105 bits (53), Expect = 2e-19
 Identities = 114/131 (87%), Gaps = 5/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcg-aattct 1505

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1504 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1445

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1444 gccctcctcct 1434

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 960  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 915



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097



 Score =  121 bits (61), Expect = 3e-24
 Identities = 115/131 (87%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1456

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1455 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1396

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1395 gccctcctcct 1385

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 998  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 953



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135



 Score =  121 bits (61), Expect = 3e-24
 Identities = 115/131 (87%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1494

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1493 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1434

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1433 gccctcctcct 1423

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 997  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 952



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134



 Score =  121 bits (61), Expect = 3e-24
 Identities = 115/131 (87%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1493

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1492 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1433

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1432 gccctcctcct 1422

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                       
Query: 505 acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
           ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                                                       
Query: 565 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782

                                                         
Query: 625 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
            ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 736



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918



 Score =  121 bits (61), Expect = 3e-24
 Identities = 115/131 (87%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1277

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1276 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1217

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1216 gccctcctcct 1206

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 957



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 334
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 335  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 394
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                                        
Query: 395  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 454
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173

                                              
Query: 455  cccgcgagttcaccagcctcttgccaatgttctc 488
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139



 Score =  121 bits (61), Expect = 3e-24
 Identities = 115/131 (87%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1498

                                                                        
Query: 168  tggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctcctt 224
            |||||    |||||||||||||||||||||| ||||   |||   |||||||||||||||
Sbjct: 1497 tggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctcctt 1438

                       
Query: 225  tacctcctcct 235
              |||||||||
Sbjct: 1437 gccctcctcct 1427

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 8e-28
 Identities = 141/166 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatg 564
            ||||||||||||||||| |||| ||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                                                        
Query: 565  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 624
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997

                                                          
Query: 625  tggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 996  cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 951



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 108  tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 1407

                                                
Query: 168  tggcattttggtcggtgcaaccttccggcacgggca 203
            |||||    |||||||||||||||||||||| ||||
Sbjct: 1406 tggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 336
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 337  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 396
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                                        
Query: 397  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 456
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165

                                            
Query: 457  cgcgagttcaccagcctcttgccaatgttctc 488
            | ||||||||||||||||||||||||||||||
Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  131 bits (66), Expect = 3e-27
 Identities = 254/317 (80%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 412  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 471
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 472  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtngtac 531
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||| ||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                                        
Query: 532  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 591
            ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | |
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003

                                                                        
Query: 592  ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 651
             | || || | ||||||   ||| ||||||||  ||||||| |||||||| || ||||| 
Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943

                             
Query: 652  cggtcgtcacgggtggg 668
            ||||| || ||||||||
Sbjct: 942  cggtcctcccgggtggg 926

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 272    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 332    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                                          
Query: 392    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 451
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485

                                                   
Query: 452    cgtcccgcgagttcaccagcctcttgccaatgttctc 488
              | |||| ||||||||||||||||||||||||||||||
Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                          
Query: 108    tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
              ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 107216

                                                  
Query: 168    tggcattttggtcggtgcaaccttccggcacgggca 203
              |||||    |||||||||||||||||||||| ||||
Sbjct: 107217 tggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                          
Query: 562    atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 621
              |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747

                                                               
Query: 622    gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
              ||  ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 108796



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 505    acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaa 554
              ||||||||||||||||| |||| ||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                          
Query: 132    tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 191
              |||||||||||||||| || || |||||||||||   |||   |||||||||||| ||  
Sbjct: 112058 tgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgcatcccg 112117

                        
Query: 192    ccggcacggg 201
              ||||||||||
Sbjct: 112118 ccggcacggg 112127



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 460    gagttcaccagcctcttgccaatgttctc 488
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                         
Query: 272   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 332   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                                         
Query: 392   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 451
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362

                                                  
Query: 452   cgtcccgcgagttcaccagcctcttgccaatgttctc 488
             | |||| ||||||||||||||||||||||||||||||
Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                         
Query: 108   tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
             ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 29097

                                                 
Query: 168   tggcattttggtcggtgcaaccttccggcacgggca 203
             |||||    |||||||||||||||||||||| ||||
Sbjct: 29098 tggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 562   atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 621
             |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624

                                                              
Query: 622   gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
             ||  ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 30673



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 505   acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaa 554
             ||||||||||||||||| |||| ||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                         
Query: 132   tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 191
             |||||||||||||||| || || |||||||||||   |||   |||||||||||| ||  
Sbjct: 33935 tgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgcatcccg 33994

                       
Query: 192   ccggcacggg 201
             ||||||||||
Sbjct: 33995 ccggcacggg 34004



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 460   gagttcaccagcctcttgccaatgttctc 488
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 272      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 332      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                            
Query: 392      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 451
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624

                                                     
Query: 452      cgtcccgcgagttcaccagcctcttgccaatgttctc 488
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                            
Query: 108      tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
                ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 28302359

                                                    
Query: 168      tggcattttggtcggtgcaaccttccggcacgggca 203
                |||||    |||||||||||||||||||||| ||||
Sbjct: 28302360 tggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 562      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 621
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886

                                                                 
Query: 622      gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
                ||  ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 28303935



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 505      acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaa 554
                ||||||||||||||||| |||| ||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                            
Query: 132      tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 191
                |||||||||||||||| || || |||||||||||   |||   |||||||||||| ||  
Sbjct: 28307197 tgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgcatcccg 28307256

                          
Query: 192      ccggcacggg 201
                ||||||||||
Sbjct: 28307257 ccggcacggg 28307266



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 460      gagttcaccagcctcttgccaatgttctc 488
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 272      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 331
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 332      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 391
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                            
Query: 392      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 451
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073

                                                     
Query: 452      cgtcccgcgagttcaccagcctcttgccaatgttctc 488
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score =  119 bits (60), Expect = 1e-23
 Identities = 88/96 (91%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                            
Query: 108      tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
                ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 28284808

                                                    
Query: 168      tggcattttggtcggtgcaaccttccggcacgggca 203
                |||||    |||||||||||||||||||||| ||||
Sbjct: 28284809 tggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 562      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 621
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335

                                                                 
Query: 622      gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggag 670
                ||  ||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggag 28286384



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 505      acccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaa 554
                ||||||||||||||||| |||| ||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                            
Query: 132      tgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacctt 191
                |||||||||||||||| || || |||||||||||   |||   |||||||||||| ||  
Sbjct: 28289646 tgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgcatcccg 28289705

                          
Query: 192      ccggcacggg 201
                ||||||||||
Sbjct: 28289706 ccggcacggg 28289715



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 460      gagttcaccagcctcttgccaatgttctc 488
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 332
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 333  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 392
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                                        
Query: 393  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 452
            ||  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828

                                       
Query: 453  gtcccgcgagttcaccagcctcttgcc 479
             ||| ||||||||||||||||||||||
Sbjct: 827  ctccagcgagttcaccagcctcttgcc 801



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 507 ccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatgga 566
           |||||| | |||||| |||| ||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                             
Query: 567 ttgtcctgggaaggtgtcgacgatcttgacgaca 600
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgaca 680



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||| ||||||| |||| ||||||||||| ||||| |||||| ||||  |||||||  |
Sbjct: 1149 gtgtacaggcagc-tgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccg 1091

                           
Query: 178  gtcggtgcaaccttc 192
            |||||| ||||||||
Sbjct: 1090 gtcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 280  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 339
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 340  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 399
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 400  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 459
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 460  gagttcaccagcctcttgcc 479
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 507 ccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatgga 566
           |||||| | |||||| |||| ||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                             
Query: 567 ttgtcctgggaaggtgtcgacgatcttgacgaca 600
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgaca 874



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||| ||||||| |||| ||||||||||| ||||| |||||| ||||  |||||||  |
Sbjct: 1305 gtgtacaggcagc-tgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccg 1247

                           
Query: 178  gtcggtgcaaccttc 192
            |||||| ||||||||
Sbjct: 1246 gtcggtacaaccttc 1232

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  107 bits (54), Expect = 5e-20
 Identities = 82/90 (91%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 114 aaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcat 173
           ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| 
Sbjct: 93  aaaggtgtaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaa 35

                                         
Query: 174 tttggtcggtgcaaccttccggcacgggca 203
              |||||||||||||||||||||| ||||
Sbjct: 34  cagggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 7e-19
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 332
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249

                                                                        
Query: 333  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 392
            ||||| |||  |||| || |||||||| | ||| || || ||||| ||||| || |||||
Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189

                                                                        
Query: 393  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 452
             |  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129

                                    
Query: 453  gtcccgcgagttcaccagcctctt 476
             ||| |||||||||||||||||||
Sbjct: 1128 ctccagcgagttcaccagcctctt 1105



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                        
Query: 507  ccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatgga 566
            |||||| | |||||| |||| ||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                              
Query: 567  ttgtcctgggaaggtgtcgacgatcttgacgaca 600
            ||| || |||||||||||||||| ||||| ||||
Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgaca 981



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||| ||||||| |||| ||||||||||| ||||| |||||| ||||  |||||||  |
Sbjct: 1450 gtgtacaggcagc-tgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccg 1392

                           
Query: 178  gtcggtgcaaccttc 192
            |||||| ||||||||
Sbjct: 1391 gtcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 280  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 339
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 340  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 399
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 400  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 459
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 460  gagttcaccagcctctt 476
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 507 ccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatgga 566
           |||||| | |||||| |||| ||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                             
Query: 567 ttgtcctgggaaggtgtcgacgatcttgacgaca 600
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgaca 844



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 118  gtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 177
            ||||| ||||||| |||| ||||||||||| ||||| |||||| ||||  |||||||  |
Sbjct: 1275 gtgtacaggcagc-tgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccg 1217

                           
Query: 178  gtcggtgcaaccttc 192
            |||||| ||||||||
Sbjct: 1216 gtcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 281 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 341 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 401 actctagcagcttctcgactgtcatctttggctgctcgaa 440
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                       
Query: 517 acctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 576
           ||||| |||| ||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                                                                       
Query: 577 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 636
           ||||||||||| | || ||||||   ||| ||   |||   ||||||  ||||||| |||
Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564

                                           
Query: 637 ttgcagacaccgatacggtcgtcacgggtggg 668
           |||||||| ||||| ||||| || ||||||||
Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtggg 532

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 281  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 341  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 401  actctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 120/152 (78%)
 Strand = Plus / Minus

                                                                        
Query: 517  acctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 576
            ||||| |||| ||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                                                                        
Query: 577  aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 636
            ||||||||||| | || ||||||   ||| ||   |||   ||||||  ||||||| |||
Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959

                                            
Query: 637  ttgcagacaccgatacggtcgtcacgggtggg 668
            |||||||| ||||| ||||| || ||||||||
Sbjct: 958  ttgcagacgccgatgcggtcctcgcgggtggg 927

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 281  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 340
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 341  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 400
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 401  actctagcagcttctcgactgtcatctttggctgctcgaa 440
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 626 ggaagatacccttgcagacaccgatacggtcgtcacgggtggg 668
           ||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtggg 927

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 137/168 (81%)
 Strand = Plus / Minus

                                                                        
Query: 501  gccgacccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtc 560
            ||||||||||||||||||||| |||| ||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                                                        
Query: 561  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 620
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124

                                                            
Query: 621  ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 668
            |||  ||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtggg 1076



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 352  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 411
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 412  ttctcgactgtcatctttggctgctcgaa 440
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 84/96 (87%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                       
Query: 108 tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
           |||||||||| | |||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 135 tgcttaaaagttttaaaggcagc-tgccgtcgtcgctcctcgccgttgggtcgaagttct 77

                                               
Query: 168 tggcattttggtcggtgcaaccttccggcacgggca 203
           |||||    ||||||  |||||||||||||| ||||
Sbjct: 76  tggcaacagggtcgggtcaaccttccggcacaggca 41

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 357
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 358 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 413
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggt 1096

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggt 1096

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggt 1125

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
            (At2g39730) mRNA, complete cds
          Length = 1697

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggt 1007

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 627 gaagatacccttgcagacaccgatacggtcgtcacgggt 665
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggt 922

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 627   gaagatacccttgcagacaccgatacggtcgtcacgggt 665
             |||||||||||||||||||||||||||||| ||||||||
Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggt 14192

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggt 1010

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggt 999

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggt 1007

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds
          Length = 1674

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggt 1010

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggt 1125

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 627  gaagatacccttgcagacaccgatacggtcgtcacgggt 665
            |||||||||||||||||||||||||||||| ||||||||
Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggt 3091

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 543  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 584
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 101/124 (81%)
 Strand = Plus / Minus

                                                                        
Query: 547  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 606
            |||||||| || ||||| ||||| || |||||||||||||||| |||||| ||    || 
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105

                                                                        
Query: 607  tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 666
            |||   ||||||||||||  |||||||||  ||   |||||||||||||| |||||||||
Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045

                
Query: 667  ggag 670
            ||||
Sbjct: 1044 ggag 1041

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 81/96 (84%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                           
Query: 108     tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
               |||||| |||||||||||||||  ||| ||||| |||| | |||||||||||  |||| |
Sbjct: 4541413 tgcttagaaggtgtaaaggcaga-tgctgtcgttgctcatcgccgttgggtcaaagttgt 4541355

                                                   
Query: 168     tggcattttggtcggtgcaaccttccggcacgggca 203
               |||||    |||||||||||||||||||||| ||||
Sbjct: 4541354 tggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 81/96 (84%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                         
Query: 108   tgcttaaaaggtgtaaaggcagcgtgccgtcgtcgctccttgccgttgggtcgtagttct 167
             |||||| |||||||||||||||  ||| ||||| |||| | |||||||||||  |||| |
Sbjct: 84787 tgcttagaaggtgtaaaggcaga-tgctgtcgttgctcatcgccgttgggtcaaagttgt 84729

                                                 
Query: 168   tggcattttggtcggtgcaaccttccggcacgggca 203
             |||||    |||||||||||||||||||||| ||||
Sbjct: 84728 tggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 543  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 596
            |||||||||||| || ||||| |||||||| |||||| | ||||||||||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                       
Query: 543 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacaga 602
           ||||||||| || |||||||| |||||||| |||||||| ||||| ||||| || |||| 
Sbjct: 435 cagagcaccaaagaagtcaatagattgtccagggaaggtatcgacaatctttacaacagc 376

                                                        
Query: 603 ctcgtcactgacattgtcggtctggaagatacccttgcagacacc 647
            || |||   || |||||||||  ||| ||||||||||| |||||
Sbjct: 375 ttcctcaggcacgttgtcggtcctgaaaatacccttgcaaacacc 331

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 309  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 368
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 369  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 428
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 429  tggctgctcgaa 440
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 523  tcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 582
            |||| |||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 583  tc 584
            ||
Sbjct: 2663 tc 2662

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 523  tcgtngtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 582
            |||| |||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 583  tc 584
            ||
Sbjct: 973  tc 972

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 624  ctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 668
            ||||||||| ||| ||||||| ||||| ||||| |||||||||||
Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggg 1817



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 352  agctgcacacgcttgacattgtcctgctc 380
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 613  acattgtcggtctggaagatacccttgcagacaccgatacggtc 656
            |||||||| |||  ||| ||||||||||||||||| ||||||||
Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtc 1000



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 301  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 350
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 547 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacga 589
           |||||||| || || |||||||| || ||||||||||||||||
Sbjct: 923 gcaccgaagaaatcgatggattggccggggaaggtgtcgacga 881

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 640  cagacaccgatacggtcgtcacgggtgggag 670
            |||||||| |||||||| |||||||||||||
Sbjct: 2813 cagacaccaatacggtcctcacgggtgggag 2783

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 547 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacga 589
           |||||||| || || |||||||| || ||||||||||||||||
Sbjct: 924 gcaccgaagaaatcgatggattggccggggaaggtgtcgacga 882



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 618 gtcggtctggaagatacccttgcagacaccgatacggtcgtc 659
           |||||||  ||| ||||| ||||| |||||||||||||||||
Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtc 812

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                        
Query: 506  cccacttgcgcacctcatcgtngtacacccgagcacgcagagcaccgaaaaagtcaatgg 565
            ||||||| | ||| |||||||  || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 566  attgtcctgggaaggtgtcgac 587
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 640  cagacaccgatacggtcgtcacgggtgggag 670
            |||||||| |||||||| |||||||||||||
Sbjct: 1185 cagacaccaatacggtcctcacgggtgggag 1155



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 550  ccgaaaaagtcaatggattgtcctgggaaggtgtcgacga 589
            ||||||||||| || |||||||| ||||||| ||| ||||
Sbjct: 1275 ccgaaaaagtcgatagattgtccagggaaggcgtcaacga 1236

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 547 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 596
           |||||||| || || |||||||| || ||||||||||| || ||||||||
Sbjct: 547 gcaccgaagaaatcgatggattggccagggaaggtgtcaacaatcttgac 498

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 547 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 596
           |||||||||||||| || |||||||| |||||| | || || ||||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 314   catcacccagagctgcctggct 335
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 640  cagacaccgatacggtcgtcacgggt 665
            ||||||||||||||||| ||||||||
Sbjct: 1016 cagacaccgatacggtcttcacgggt 991

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 13    aatatatttagagatatattaa 34
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     atactaatatatttagagatatatt 32
             |||| ||||||||||||||||||||
Sbjct: 30449 atacaaatatatttagagatatatt 30473

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 574  gggaaggtgtcgacgatcttg 594
            |||||||||||||||||||||
Sbjct: 3653 gggaaggtgtcgacgatcttg 3673

---

>emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 150986

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     tactaatatatttagagatat 29
             |||||||||||||||||||||
Sbjct: 20639 tactaatatatttagagatat 20659

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 84      aaacatcagatattaaaagtg 104
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region,
              complete sequence
          Length = 192871

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      tactaatatatttagagatat 29
              |||||||||||||||||||||
Sbjct: 183825 tactaatatatttagagatat 183845

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   atgcagcaagagatggtgggt 256
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     atactaatatatttagagatatatt 32
             |||| ||||||||||||||||||||
Sbjct: 62509 atacaaatatatttagagatatatt 62485

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 84      aaacatcagatattaaaagtg 104
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     aaacatcagatattaaaagtg 104
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tatatttagagatatattaac 35
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 624   ctggaagatacccttgcagacacc 647
             ||||| ||||||||||||||||||
Sbjct: 67288 ctggatgatacccttgcagacacc 67265

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  cctttacctcctcctatgca 240
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 310  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 369
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 370  ttgtcctgctcctggacgagcatg 393
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 gtcagcaagctgcacacgct 364
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 592 ttgacgacagactcgtcact 611
           ||||||||||||||||||||
Sbjct: 289 ttgacgacagactcgtcact 308

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcagatattaaaagtggcat 108
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcagatattaaaagtggcat 108
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tcagatattaaaagtggcat 108
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>emb|AL049563.4|HS68D15 Human DNA sequence from clone RP1-68D15 on chromosome X Contains the
            3' end of a novel gene (FLJ23018) and the 3' end of the
            TRPC5 gene for transient receptor potential cation
            channel subfamily C member 5, complete sequence
          Length = 113028

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   actaatatatttagagatat 29
            ||||||||||||||||||||
Sbjct: 7687 actaatatatttagagatat 7706

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ttgacattgtcctgctcctg 383
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    aaacatgcccagcaatcgcttgga 60
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tggcatgcttaaaaggtgta 122
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 643     acaccgatacggtcgtcacg 662
               ||||||||||||||||||||
Sbjct: 3056308 acaccgatacggtcgtcacg 3056327

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    ttgacattgtcctgctcctg 383
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>gb|AC093634.3| Homo sapiens BAC clone RP11-168E14 from 4, complete sequence
          Length = 82529

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 7    tatactaatatatttagagatatattaa 34
            |||| ||||||||||||| |||||||||
Sbjct: 9678 tatattaatatatttagaaatatattaa 9705

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  catcacccagagctgcctggctca 337
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 210 cttgctgtgctcctttacctcctc 233
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cctttacctcctcctatgca 240
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>emb|BX548013.3| Mouse DNA sequence from clone RP23-452C18 on chromosome X, complete
             sequence
          Length = 14756

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    taatatatttagagatatat 31
             ||||||||||||||||||||
Sbjct: 10253 taatatatttagagatatat 10234

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     atcagatattaaaagtggcatgct 111
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,588,145
Number of Sequences: 3902068
Number of extensions: 4588145
Number of successful extensions: 89539
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89049
Number of HSP's gapped (non-prelim): 406
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---