ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal15i11 |
|---|---|
| Clone Library Name | barley_pub |
>XPO1_RAT (Q80U96) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 89.4 bits (220), Expect = 1e-17 Identities = 42/99 (42%), Positives = 67/99 (67%), Gaps = 4/99 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 F++DY LL ++FP++ A+V FV GL D+P+FK H+RDFLVQ KEF+ +D D Sbjct: 973 FIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1032 Query: 555 LYAEE---AAVQREKERQRM-LAIPGLIAPSELQDEMVD 451 L+ EE A Q ++E+ ++ +++PG++ P E+ +EM D Sbjct: 1033 LFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1071
>XPO1_MOUSE (Q6P5F9) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 89.4 bits (220), Expect = 1e-17 Identities = 42/99 (42%), Positives = 67/99 (67%), Gaps = 4/99 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 F++DY LL ++FP++ A+V FV GL D+P+FK H+RDFLVQ KEF+ +D D Sbjct: 973 FIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1032 Query: 555 LYAEE---AAVQREKERQRM-LAIPGLIAPSELQDEMVD 451 L+ EE A Q ++E+ ++ +++PG++ P E+ +EM D Sbjct: 1033 LFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1071
>XPO1_HUMAN (O14980) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 87.8 bits (216), Expect = 3e-17 Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 4/99 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 F+++Y LL ++FP++ A+V FV GL D+P+FK H+RDFLVQ KEF+ +D D Sbjct: 973 FLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1032 Query: 555 LYAEEAAV----QREKERQRMLAIPGLIAPSELQDEMVD 451 L+ EE + E++ +R +++PG+ P E+ +EM D Sbjct: 1033 LFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD 1071
>XPO1_DROME (Q9TVM2) Exportin-1 (Chromosome region maintenance 1 protein)| (Protein embargoed) Length = 1063 Score = 72.0 bits (175), Expect = 2e-12 Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 4/99 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 F+++Y LL ++F +++ +V FV GL ++ +FK H+RDFL+Q +E + +D+ D Sbjct: 964 FIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQAFKEHLRDFLIQIREATGEDDSD 1023 Query: 555 LYAEE----AAVQREKERQRMLAIPGLIAPSELQDEMVD 451 LY EE A ++ + Q IPG++ P EL ++M D Sbjct: 1024 LYLEEREAALAEEQSNKHQMQRNIPGMLNPHELPEDMQD 1062
>XPO1_SCHPO (P14068) Exportin-1 (Chromosome region maintenance protein 1)| (Caffeine resistance protein 2) Length = 1078 Score = 64.3 bits (155), Expect = 4e-10 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 F+R Y + LL +FP++ ++ +FV +L D FK +RDFL+Q KEF DN + Sbjct: 979 FLRQYIMNLLVTAFPHLQPIQIQEFVQTVLALNQDSIKFKLALRDFLIQLKEFGG-DNAE 1037 Query: 555 LYAE----EAAVQREKERQRMLAIPGLIAPSEL 469 LY E E A Q++ + ++ + +PG+I P ++ Sbjct: 1038 LYLEEKEQELAAQQKAQLEKAMTVPGMIKPVDM 1070
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 59.3 bits (142), Expect = 1e-08 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Frame = -2 Query: 735 FVRDYTIKLLGASFPNMTVAEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKD 556 ++ Y +L +FP++T ++ F+ L DL FK +RDFLVQ KE Sbjct: 990 YLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEVGGDPTDY 1049 Query: 555 LYAEE----AAVQREKERQRMLAIPGLIAPSELQD 463 L+AE+ Q ER++ I GL+ PSEL D Sbjct: 1050 LFAEDKENALMEQNRLEREKAAKIGGLLKPSELDD 1084
>TBP_TRIGA (Q92146) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 302 Score = 35.0 bits (79), Expect = 0.24 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Frame = +3 Query: 336 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQASVA 515 + SP P+ L P +P Q++N +S E Q + A + S S Sbjct: 27 IFSPMMPYGTGLTP------QPAQSTNSLSILEEQQRQQQQQQAAAQQSTSQPTQAPSGQ 80 Query: 516 FPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 605 P LF Q PLP T P YP TP+ I P +P Sbjct: 81 TPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 117
>TBP_XENLA (P27633) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 297 Score = 34.7 bits (78), Expect = 0.31 Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Frame = +3 Query: 321 ITAGTLLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSAL-- 494 IT GT L+PQP QT+N +S E Q ++ QS L Sbjct: 31 ITYGTGLTPQPV----------------QTTNSLSILEEQQRQQQQTQ------QSTLQQ 68 Query: 495 GWQASVAFPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 605 G Q S P LF PQ PLP P YP TP+ I+P +P Sbjct: 69 GNQGSGQTPQLFHPQTLTTAPLPGNTPLYPSPITPMTPISPATP 112
>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)| Length = 2829 Score = 33.9 bits (76), Expect = 0.54 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 7/97 (7%) Frame = +3 Query: 300 NRRTGNKITAGTLLSPQP-------PWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLP 458 N R+G++ +A + SPQP P + +++PG G+ PN+ S + S ST S Sbjct: 2297 NSRSGSRDSASSRPSPQPLSRPLQSPGRNSISPGKNGISPPNKFSQ-LPRTTSPSTASTK 2355 Query: 459 SRLAIR*GQSALGWQASVAFPFLFVPQPLPHTDPCYP 569 S + R ++ G Q S P L LP T P Sbjct: 2356 SSGSGRMSYTSPGRQLSQ--PNLSKQSGLPKTHSSIP 2390
>TBP_CHICK (O13270) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 302 Score = 33.5 bits (75), Expect = 0.70 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Frame = +3 Query: 336 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQA--- 506 + SP P+ L P +P Q++N +S E Q + A QS+ QA Sbjct: 27 IFSPMMPYGTGLTP------QPVQSTNSLSILEEQQRQQQQQQAA----QSSTSQQATQG 76 Query: 507 -SVAFPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 605 S P LF Q PLP T P YP TP+ I P +P Sbjct: 77 TSGQTPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 117
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 32.3 bits (72), Expect = 1.6 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = +3 Query: 261 SPRLPIIN*HKSWNRRT-----GNKITAGTLLSPQPPWKKTLAPGHGGLWRPNQTSNWIS 425 SPRLPI H S R +K T+G LSP ++ P L TS+W Sbjct: 1028 SPRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSV 1087 Query: 426 NAESQSTMSLPS 461 S ++PS Sbjct: 1088 PPPLTSVFTMPS 1099
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 32.0 bits (71), Expect = 2.0 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 137 ILYHAQHTHKMFHRALKTHPSNHPHSPQNAPGLPSKS 247 +L H H+H+ H L +HP + SP ++PG S S Sbjct: 14 LLGHGPHSHQHVHSHLPSHPQPNAASPASSPGGSSGS 50
>TBP_TRIFL (Q92117) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 300 Score = 31.2 bits (69), Expect = 3.5 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Frame = +3 Query: 336 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQASVA 515 + SP P+ L P +P Q++N +S E Q + A + S S Sbjct: 27 IFSPMMPYGTGLTP------QPAQSTNSLSILEEQQRQQ--QQAAAQQSTSQPTQAPSGQ 78 Query: 516 FPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 605 P LF Q PLP T P YP TP+ I P +P Sbjct: 79 TPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 115
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 30.8 bits (68), Expect = 4.5 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Frame = +3 Query: 330 GTLLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQAS 509 G + PW + P +G W P+ S A S + G S W + Sbjct: 1511 GGISPAMTPWNQGATPAYGA-WSPSVGSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 1568 Query: 510 VAFPFLFVPQPLPHTDPCYPGLRTPLIAPGSP*YGF*SLGGHVSNQGAHQQT---WSPQL 680 P P P P G +P +P SP Y S GG+ ++ T +SP Sbjct: 1569 PGSPGS--PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTS 1626 Query: 681 PS 686 PS Sbjct: 1627 PS 1628
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 30.8 bits (68), Expect = 4.5 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Frame = +3 Query: 330 GTLLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQAS 509 G + PW + P +G W P+ S A S + G S W + Sbjct: 1511 GGISPAMTPWNQGATPAYGA-WSPSVGSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 1568 Query: 510 VAFPFLFVPQPLPHTDPCYPGLRTPLIAPGSP*YGF*SLGGHVSNQGAHQQT---WSPQL 680 P P P P G +P +P SP Y S GG+ ++ T +SP Sbjct: 1569 PGSPGS--PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTS 1626 Query: 681 PS 686 PS Sbjct: 1627 PS 1628
>SRY_BOSMU (Q9XS37) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSJA (Q8SPQ1) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSIN (Q7JGF7) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSGF (Q7JGF9) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BISBO (Q27949) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BISBI (Q8SPQ2) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 288 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 380 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich| glycoprotein) (HPRG) (Fragments) Length = 396 Score = 30.0 bits (66), Expect = 7.7 Identities = 18/68 (26%), Positives = 25/68 (36%) Frame = +2 Query: 140 LYHAQHTHKMFHRALKTHPSNHPHSPQNAPGLPSKSCGKIESTPPYHQLAQILESPNRK* 319 ++H + + H H H HSP P P K G + P+ P Sbjct: 162 VFHRRFSAVQHHLGRPFHSGEHEHSPAGRP--PFKPSGSKDHGHPHESYNFRCPPPLEHK 219 Query: 320 NYSRHPPF 343 N+S PPF Sbjct: 220 NHSDSPPF 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,851,090 Number of Sequences: 219361 Number of extensions: 2566873 Number of successful extensions: 7084 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 6666 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7058 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
