ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15i11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009586.1| Triticum aestivum clone wre1n.pk0047.b2:fis, full... 755 0.0
2ref|XM_470491.1| Oryza sativa (japonica cultivar-group), mRNA 254 4e-64
3dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 4e-64
4dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 4e-64
5gb|AY109392.1| Zea mays CL1001_1 mRNA sequence 206 8e-50
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
7gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 129 1e-26
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
9gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete s... 94 8e-16
10gb|AY731575.1| Arachis hypogaea clone PM421 microsatellite sequence 48 0.041
11emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chro... 44 0.65
12gb|BC036799.1| Homo sapiens, clone IMAGE:5590162, mRNA 44 0.65
13gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 2.6
14gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 42 2.6
15emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in ... 42 2.6
16emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 i... 42 2.6
17emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 i... 42 2.6
18emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in ... 42 2.6

>gb|BT009586.1| Triticum aestivum clone wre1n.pk0047.b2:fis, full insert mRNA
           sequence
          Length = 890

 Score =  755 bits (381), Expect = 0.0
 Identities = 456/479 (95%), Gaps = 14/479 (2%)
 Strand = Plus / Minus

                                                                       
Query: 272 ccctatcatcaactagca---caaatcttggaatcgccgaaccggaaataaaattacagc 328
           ||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||
Sbjct: 590 ccctatcatcaactagcagcacaaatcttggaatcgccaaaccggaaataaaattacagc 531

                                                                       
Query: 329 aggca---ccctcctttcaccacaaccacc---ctggaagaaaactctggctccgggaca 382
           |||||   ||||||||||||||| ||||||   |||||||||||||| ||||||||||||
Sbjct: 530 aggcatcaccctcctttcaccaccaccaccaccctggaagaaaactcaggctccgggaca 471

                                                                       
Query: 383 tggaggcctctggaggcctaatcaaacatcaaactggattagcaatgcag-----aatca 437
           ||||||||||||||||||||||| | ||||||||||||||||||||||||     |||||
Sbjct: 470 tggaggcctctggaggcctaatcgaccatcaaactggattagcaatgcagtgcacaatca 411

                                                                       
Query: 438 cagagcactatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctggga 497
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 410 cagagcactatgagtctaccatctcatcttgcaattcgcttggggcaatcagccctggga 351

                                                                       
Query: 498 tggcaagcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagat 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggcaagcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagat 291

                                                                       
Query: 558 ccttgttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttt 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccttgttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttt 231

                                                                       
Query: 618 tgaagcttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcag 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tgaagcttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcag 171

                                                                      
Query: 678 ctaccgtcatgttaggaaatgatgccccaagaagtttgattgtgtagtcccgtacaaac 736
           || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 170 ctgccgtcatgttaggaaatgatgctccaagaagtttgattgtgtagtcccgtacaaac 112



 Score =  226 bits (114), Expect = 8e-56
 Identities = 132/137 (96%), Gaps = 1/137 (0%)
 Strand = Plus / Minus

                                                                       
Query: 80  catcntaatacagtcatcaaatctatagactaaactaacaattaaggatcaacatccata 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 catcataatacagtcatcaaatctatagactaaactaacaattaaggatcaacatccata 705

                                                                       
Query: 140 ctatatcatgctcagcacacgcacaaaatgtttcaccgagcacttaaaacacatccatct 199
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 704 ctatatcatgctcagcacacgcacaaaatgtttcaccgagcac-taaaacacatccatct 646

                            
Query: 200 aaccatccacacagccc 216
           | ||| ||| |||||||
Sbjct: 645 agccaaccaaacagccc 629



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>ref|XM_470491.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3679

 Score =  254 bits (128), Expect = 4e-64
 Identities = 275/323 (85%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                        
Query: 414  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 3242 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 3185

                                                                        
Query: 474  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 3184 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 3125

                                                                        
Query: 534  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 593
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 3124 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 3065

                                                                        
Query: 594  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 653
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 3064 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 3005

                                                                        
Query: 654  catcaacaaacttggtcacctcagctaccgtcatgttaggaaatgatgccccaagaagtt 713
            |||||||||| || || |||||||     |||||||| ||||||||||  || | |||||
Sbjct: 3004 catcaacaaattttgtaacctcagtaggtgtcatgttgggaaatgatgaacctaaaagtt 2945

                                   
Query: 714  tgattgtgtagtcccgtacaaac 736
            | |||||||| || || ||||||
Sbjct: 2944 ttattgtgtaatctcggacaaac 2922



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 308  aaccggaaataaaattacagcaggcaccctcctttcaccac 348
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 3350 aaccgaaaataaaattacagcaggca-ccttctttcaccac 3311



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>dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118H18, full
            insert sequence
          Length = 3882

 Score =  254 bits (128), Expect = 4e-64
 Identities = 275/323 (85%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                        
Query: 414  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 3479 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 3422

                                                                        
Query: 474  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 3421 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 3362

                                                                        
Query: 534  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 593
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 3361 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 3302

                                                                        
Query: 594  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 653
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 3301 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 3242

                                                                        
Query: 654  catcaacaaacttggtcacctcagctaccgtcatgttaggaaatgatgccccaagaagtt 713
            |||||||||| || || |||||||     |||||||| ||||||||||  || | |||||
Sbjct: 3241 catcaacaaattttgtaacctcagtaggtgtcatgttgggaaatgatgaacctaaaagtt 3182

                                   
Query: 714  tgattgtgtagtcccgtacaaac 736
            | |||||||| || || ||||||
Sbjct: 3181 ttattgtgtaatctcggacaaac 3159



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 308  aaccggaaataaaattacagcaggcaccctcctttcaccac 348
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 3587 aaccgaaaataaaattacagcaggca-ccttctttcaccac 3548



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>dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136O19, full
            insert sequence
          Length = 1597

 Score =  254 bits (128), Expect = 4e-64
 Identities = 275/323 (85%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                        
Query: 414  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 1186 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 1129

                                                                        
Query: 474  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 1128 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 1069

                                                                        
Query: 534  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 593
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 1068 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 1009

                                                                        
Query: 594  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 653
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 1008 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 949

                                                                        
Query: 654  catcaacaaacttggtcacctcagctaccgtcatgttaggaaatgatgccccaagaagtt 713
            |||||||||| || || |||||||     |||||||| ||||||||||  || | |||||
Sbjct: 948  catcaacaaattttgtaacctcagtaggtgtcatgttgggaaatgatgaacctaaaagtt 889

                                   
Query: 714  tgattgtgtagtcccgtacaaac 736
            | |||||||| || || ||||||
Sbjct: 888  ttattgtgtaatctcggacaaac 866



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 308  aaccggaaataaaattacagcaggcaccctcctttcaccac 348
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 1294 aaccgaaaataaaattacagcaggca-ccttctttcaccac 1255



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>gb|AY109392.1| Zea mays CL1001_1 mRNA sequence
          Length = 2488

 Score =  206 bits (104), Expect = 8e-50
 Identities = 219/259 (84%)
 Strand = Plus / Plus

                                                                       
Query: 443 cactatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctgggatggca 502
           ||||| || |||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct: 571 cactacgaatctaccatctcgtcttgcaactcgctaggggcaatgagccccggaatggca 630

                                                                       
Query: 503 agcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagatccttg 562
           ||||| ||||| |  ||| | ||||||||  | |||||||||||||| || |||||||||
Sbjct: 631 agcatacgttggcgctccctctctctttgggcagcagcctcttccgcgtatagatccttg 690

                                                                       
Query: 563 ttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttttgaag 622
           ||||||||  ||||||||||||| || |||||||||||||| |||||||||     ||||
Sbjct: 691 ttatcctgaactgagaactccttggactgcaccaggaagtctctaatatggnnnnngaag 750

                                                                       
Query: 623 cttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcagctacc 682
           ||||| || ||| || | |||| ||| || ||||| |||||||| |||||||| | ||| 
Sbjct: 751 cttggaagatcaagttttgaactaagaagaccatctacaaactttgtcacctcggttact 810

                              
Query: 683 gtcatgttaggaaatgatg 701
           |||||||||||||||||||
Sbjct: 811 gtcatgttaggaaatgatg 829



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                            
Query: 575      gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 634
                |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 35909890 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 35909949

                                             
Query: 635      tgtctcgaaccaaggagcccatcaacaaa 663
                ||| | |||| ||| ||||||||||||||
Sbjct: 35909950 tgttttgaactaagaagcccatcaacaaa 35909978



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                            
Query: 414      aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
                |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 35909289 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 35909346

                                                                            
Query: 474      cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
                |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 35909347 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 35909406

                                                    
Query: 534      ccgcagcctcttccgcatacagatccttgttatcct 569
                | ||||||||||| ||||||| |||||| |||||||
Sbjct: 35909407 cagcagcctcttcagcatacaaatccttattatcct 35909442



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                         
Query: 308      aaccggaaataaaattacagcaggcaccctcctttcaccac 348
                ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 35909181 aaccgaaaataaaattacagcaggca-ccttctttcaccac 35909220



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 685      catgttaggaaatgatgcccc 705
                |||||||||||||||||||||
Sbjct: 31760958 catgttaggaaatgatgcccc 31760978



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 188      acacatccatctaaccatccacaca 212
                ||||||||||||| |||||||||||
Sbjct: 13143748 acacatccatctatccatccacaca 13143772



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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                         
Query: 575   gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 634
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 51235 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 51176

                                          
Query: 635   tgtctcgaaccaaggagcccatcaacaaa 663
             ||| | |||| ||| ||||||||||||||
Sbjct: 51175 tgttttgaactaagaagcccatcaacaaa 51147



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Minus

                                                                         
Query: 414   aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
             |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 51836 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 51779

                                                                         
Query: 474   cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
             |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 51778 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 51719

                                                 
Query: 534   ccgcagcctcttccgcatacagatccttgttatcct 569
             | ||||||||||| ||||||| |||||| |||||||
Sbjct: 51718 cagcagcctcttcagcatacaaatccttattatcct 51683



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                      
Query: 308   aaccggaaataaaattacagcaggcaccctcctttcaccac 348
             ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 51944 aaccgaaaataaaattacagcaggca-ccttctttcaccac 51905



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                            
Query: 575      gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 634
                |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 36000020 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 36000079

                                             
Query: 635      tgtctcgaaccaaggagcccatcaacaaa 663
                ||| | |||| ||| ||||||||||||||
Sbjct: 36000080 tgttttgaactaagaagcccatcaacaaa 36000108



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                            
Query: 414      aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 473
                |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 35999419 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 35999476

                                                                            
Query: 474      cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 533
                |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 35999477 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 35999536

                                                    
Query: 534      ccgcagcctcttccgcatacagatccttgttatcct 569
                | ||||||||||| ||||||| |||||| |||||||
Sbjct: 35999537 cagcagcctcttcagcatacaaatccttattatcct 35999572



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                         
Query: 308      aaccggaaataaaattacagcaggcaccctcctttcaccac 348
                ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 35999311 aaccgaaaataaaattacagcaggca-ccttctttcaccac 35999350



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 685      catgttaggaaatgatgcccc 705
                |||||||||||||||||||||
Sbjct: 31851474 catgttaggaaatgatgcccc 31851494



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 188      acacatccatctaaccatccacaca 212
                ||||||||||||| |||||||||||
Sbjct: 13140523 acacatccatctatccatccacaca 13140547



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>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                         
Query: 445   ctatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctgggatggcaag 504
             ||||||||| ||||| || |||||||| ||| | ||||||||||||||||| || | |||
Sbjct: 51640 ctatgagtccaccatttcatcttgcaactcgattggggcaatcagccctggaatagaaag 51699

                                                                         
Query: 505   catccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagatccttgtt 564
             ||| | ||||| |||  ||||||| ||  ||||||||||||| ||||| ||||| |||||
Sbjct: 51700 cattctttgccgttctctttctctctgagccgcagcctcttcagcatagagatctttgtt 51759

                    
Query: 565   atcctgg 571
             |||||||
Sbjct: 51760 atcctgg 51766



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>gb|AY731575.1| Arachis hypogaea clone PM421 microsatellite sequence
          Length = 355

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 445 ctatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccc 492
           |||||| || ||||| || |||||||||||||| |||||||| |||||
Sbjct: 281 ctatgaatccaccatttcatcttgcaattcgctcggggcaataagccc 234



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>emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chromosome 9 Contains three
              novel genes, the 5' end of a novel gene, a novel pseudogene
              and seven CpG islands, complete sequence
          Length = 165696

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 377    gggacatggaggcctctggagg 398
              ||||||||||||||||||||||
Sbjct: 156385 gggacatggaggcctctggagg 156406



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>gb|BC036799.1| Homo sapiens, clone IMAGE:5590162, mRNA
          Length = 2035

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 377  gggacatggaggcctctggagg 398
            ||||||||||||||||||||||
Sbjct: 1727 gggacatggaggcctctggagg 1706



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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 188   acacatccatctaaccatccacaca 212
             ||||||||||||| |||||||||||
Sbjct: 82890 acacatccatctatccatccacaca 82866



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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
             sequence
          Length = 134496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 685   catgttaggaaatgatgcccc 705
             |||||||||||||||||||||
Sbjct: 86184 catgttaggaaatgatgcccc 86204



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>emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in linkage group 16,
             complete sequence
          Length = 215158

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 512   tgcctttccttttctctttgt 532
             |||||||||||||||||||||
Sbjct: 23799 tgcctttccttttctctttgt 23819



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>emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 in linkage group 7,
             complete sequence
          Length = 30205

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   atccatctaaccatccacaca 212
             |||||||||||||||||||||
Sbjct: 16520 atccatctaaccatccacaca 16500



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>emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7,
             complete sequence
          Length = 192578

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atccatctaaccatccacaca 212
             |||||||||||||||||||||
Sbjct: 49523 atccatctaaccatccacaca 49543



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>emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in linkage group 7,
            complete sequence
          Length = 19313

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 192  atccatctaaccatccacaca 212
            |||||||||||||||||||||
Sbjct: 2794 atccatctaaccatccacaca 2814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,476,361
Number of Sequences: 3902068
Number of extensions: 6476361
Number of successful extensions: 120612
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120366
Number of HSP's gapped (non-prelim): 234
length of query: 736
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 713
effective length of database: 17,143,297,704
effective search space: 12223171262952
effective search space used: 12223171262952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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