>CIDEB_MOUSE (O70303) Cell death activator CIDE-B (Cell death-inducing DFFA-like|
           effector B)
          Length = 219

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 277 QG*SHLLLGAISCRLQEVVEGAGRWKLH 360
           QG  H+LLG IS  L+ VVEGA RW+ H
Sbjct: 186 QGLGHMLLG-ISSTLRHVVEGADRWQWH 212

>NUPL2_PONPY (Q5RB98) Nucleoporin-like 2|
          Length = 423

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +3

Query: 309 KLPPSGSCRRGWPVEASPWSTVPMTQG*SQNHKNLPWEG*NGRQQEGLAQGCLESSCGHS 488
           +L PSG+ RRGW   +  +S V  +   S   K+ PW G   R QE  + G  +S    +
Sbjct: 36  QLQPSGNNRRGWNTTSQRYSNVIQS---SSFSKSTPWGG--SRDQEKPSFGSFDSGASTN 90

Query: 489 R 491
           R
Sbjct: 91  R 91

>NUPL2_MOUSE (Q8CIC2) Nucleoporin-like 2 (NLP-1)|
          Length = 420

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 315 PPSGSCRRGWPVEASPWSTVPMTQG*SQNHKNLPWEG*NGRQQEGLAQGCLESSCGHSR 491
           PPSG+ RRGW   +  +S V      S   K+ PW G   R Q+    G  +S    SR
Sbjct: 40  PPSGNNRRGWNASSQRYSNVIQP---SSFPKSTPWGG--SRDQDKPPFGSFDSGASTSR 93

>KCC2B_HUMAN (Q13554) Calcium/calmodulin-dependent protein kinase type II beta|
           chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM
           kinase II beta subunit) (CaMK-II beta subunit)
          Length = 664

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 518 PDPRASH*LVIVPYGRGEVETDAPATWPATCSADSSN*PTP 640
           P PR S  L  V  G G  E +AP  WP  C + +   P P
Sbjct: 488 PSPRISDILNSVRRGSGTPEAEAPRQWPPPCPSPTIPGPLP 528

>HA17_MOUSE (P14429) H-2 class I histocompatibility antigen, Q7 alpha chain|
           precursor (QA-2 antigen)
          Length = 334

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 585 ASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPD-NPVPSLPAAD 433
           A V+  P  YG +T +C ALG        +W +NG   T D   V + PA D
Sbjct: 208 AHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGD 259

>HA12_RAT (P16391) RT1 class I histocompatibility antigen, AA alpha chain|
           precursor
          Length = 371

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 585 ASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPD-NPVPSLPAAD 433
           A V+  P P G +T +C ALG        +W +NG + T D   V + PA D
Sbjct: 211 AHVTLHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGD 262

>HA11_RAT (P15978) Class I histocompatibility antigen, Non-RT1.A alpha-1|
           chain precursor
          Length = 319

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 585 ASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPD-NPVPSLPAAD 433
           A V+  P P G +T +C ALG        +W +NG + T D   V + PA D
Sbjct: 211 AHVTLHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGD 262

>HA18_MOUSE (P14430) H-2 class I histocompatibility antigen, Q8 alpha chain|
           precursor
          Length = 326

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 585 ASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPD-NPVPSLPAAD 433
           A V+  P  YG +T +C ALG        +W +NG   T D   V + PA D
Sbjct: 208 AHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGD 259

>REV_HV1Y2 (P35960) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 510 KKLSSWLVNGHNSTPDNPVP-SLPAADHFILPKVNSCGFEINLASSEPCSMVKLPP 346
           + +S WL++ +   P  PVP  LP  +   L     CG         P  +V+ PP
Sbjct: 53  RSISGWLLSNYLGRPTEPVPFQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPP 108

>PAX8_HUMAN (Q06710) Paired box protein Pax-8|
          Length = 450

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -1

Query: 639 GVGQLLESALHVAGQVAGASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPDN 460
           G G    SA  +AG VAG+  S +   +   +S  EA G      LSS       S P  
Sbjct: 382 GQGSYASSA--IAGMVAGSEYSGNAYGHTPYSSYSEAWGFPNSSLLSSPYYYSSTSRPSA 439

Query: 459 PVPSLPAADH 430
           P  +  A DH
Sbjct: 440 PPTTATAFDH 449

>YLM5_CAEEL (P34379) Hypothetical protein D2007.5|
          Length = 443

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -1

Query: 585 ASVSTSPLPYGTMTSQCEALGSGTRKKLSSWLVNGHNSTPDNPVPSL-PAADHFILPKVN 409
           A +     P+  +        +GT+K  SS  +N   STP++  P++   A+ F   K++
Sbjct: 288 ADLRNHSFPFVNLLQSAYNPANGTKKNSSSTCLNSPKSTPEDKEPTIEKVAESFRAAKID 347

Query: 408 SCGFEINLASSEPCSMVKL 352
              FE +     P   ++L
Sbjct: 348 EVVFEEDEDEELPLDSMEL 366

>OCLN_RAT (Q6P6T5) Occludin|
          Length = 523

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 504 LSSWLVNGHNSTPDNPVPSLPAADHFILPKVNSCGFEINLASSEPCSMVKLPPASP 337
           +  W+ N    T D P P    A+    P   S   ++N   S P S+ K PP  P
Sbjct: 294 VEEWVKNVSAGTQDMPPPPSDYAERVDSPMAYSSNGKVNGKRSYPDSLYKSPPLVP 349


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,311,307
Number of Sequences: 219361
Number of extensions: 2200939
Number of successful extensions: 5074
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5073
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)