ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C8... 32 0.55
2YOHB_SCHPO (O14364) Hypothetical protein C13E7.11 in chromosome II 29 2.7
3CBIO3_STAAR (Q6GDC0) Putative cobalt import ATP-binding protein ... 29 3.6
4CBIO3_STRMU (Q93D97) Putative cobalt import ATP-binding protein ... 28 4.6
5PRPP1_DROME (Q9V521) Probable phenoloxidase subunit CG8193 precu... 28 4.6
6PYRD_AGRAE (P28294) Dihydroorotate dehydrogenase (EC 1.3.3.1) (D... 28 6.1

>YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C821.13c (EC|
           3.6.3.1)
          Length = 1562

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 200 REERPSPSADASN*RGGDEYVPKRNRTDPYTVEPXPGQPXS 78
           R  R   SA  S  R  DE  P+R   DP  + P P  P S
Sbjct: 343 RRSRSQESASRSTIRSTDEREPERTSEDPPQLPPSPSSPSS 383



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>YOHB_SCHPO (O14364) Hypothetical protein C13E7.11 in chromosome II|
          Length = 298

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 90  PWXRLNCIRVRAIAFRDIFVPATLITGIGGGTWPFFSHIDTKSSYMALLDASFPVPSSAS 269
           PW     IR+  I    ++ P T   G+G  T+   +++D +          FP+P ++S
Sbjct: 22  PW-----IRIENIKPTPLWKPITFAVGVGSATFYTANYLDKRRKNYPKSSYGFPIPQTSS 76



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>CBIO3_STAAR (Q6GDC0) Putative cobalt import ATP-binding protein cbiO 3|
          Length = 570

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 125 DCVSGHIRPRHVNYWHRRRDLAVLLAHRHEELVYGPVRRIISGAL 259
           +CV      ++V+YW  + D+   L HR ++L  G  +R+  G +
Sbjct: 115 NCVEQDDMKKNVSYWAEKVDMIEHLNHRPQDLSGGQKQRVSLGGI 159



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>CBIO3_STRMU (Q93D97) Putative cobalt import ATP-binding protein cbiO 3|
          Length = 558

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 125 DCVSGHIRPRHVNYWHRRRDLAVLLAHRHEELVYGPVRRI 244
           DCV+       V+ W  + DL  LL HR ++L  G  +R+
Sbjct: 114 DCVAHETMFERVDTWADKLDLKELLQHRPQDLSGGQKQRV 153



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>PRPP1_DROME (Q9V521) Probable phenoloxidase subunit CG8193 precursor (EC|
           1.14.18.1)
          Length = 684

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 119 PCDCVSGHIRPRHVNYWHRRRDLAVLLAHRHEELVY 226
           P D  +  + P H   W+ R DL + L H H  LVY
Sbjct: 181 PRDYTASDLDPEH-RLWYFREDLGINLHHWHWHLVY 215



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>PYRD_AGRAE (P28294) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 328

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 187 QVPPPMPVINVAGTNMSRNAIARTXXXXXXXXXXXXPGETKPEP 56
           +V P MP+I V G + +  A+ +             P  ++PEP
Sbjct: 283 RVGPDMPLIGVGGVDSAETALTKVKAGARSRPALYGPDLSRPEP 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,523,905
Number of Sequences: 219361
Number of extensions: 788883
Number of successful extensions: 1740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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