ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7b06 |
|---|---|
| Clone Library Name | barley_pub |
>IDHC_SOLTU (P50217) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 416 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 +H ID MVAYA+K EG Y+ K D D++SDFLAQ F +SV Sbjct: 249 EHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 296
>IDHP_MEDSA (Q40345) Isocitrate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (Fragment) Length = 433 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 +H ID MVAYA+K EG Y+ K D D++SDFLAQ F +SV Sbjct: 270 EHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 317
>IDHC_SOYBN (Q06197) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 413 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 +H ID MVAYA+K EG Y+ K D D++SDFLAQ F +SV Sbjct: 250 EHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 297
>IDHC_TOBAC (P50218) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 415 Score = 38.1 bits (87), Expect = 0.021 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 +H ID M AYA+K EG Y+ K D D++SDFLAQ F +SV Sbjct: 249 EHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSV 296
>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7073 Score = 30.4 bits (67), Expect = 4.4 Identities = 11/39 (28%), Positives = 24/39 (61%) Frame = -1 Query: 247 HSVFICFLLDLQYTALIEVYSVYFLDHLLTRVYIVWFIL 131 + +F F L +A+++V+ YF H ++ +++WFI+ Sbjct: 2308 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFII 2346
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 30.4 bits (67), Expect = 4.4 Identities = 11/39 (28%), Positives = 24/39 (61%) Frame = -1 Query: 247 HSVFICFLLDLQYTALIEVYSVYFLDHLLTRVYIVWFIL 131 + +F F L +A+++V+ YF H ++ +++WFI+ Sbjct: 2306 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFII 2344
>IDHP_HUMAN (P48735) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 30.4 bits (67), Expect = 4.4 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = -3 Query: 389 NKH--ADFPE*SSHRQHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFR 219 +KH DF + +H ID MVA +K G ++ K D D++SD LAQ F Sbjct: 271 DKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLM 330 Query: 218 SSV 210 +SV Sbjct: 331 TSV 333
>IDHP_PIG (P33198) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) (Fragment) Length = 421 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -3 Query: 377 DFPE*SSHRQHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 DF + +H ID MVA +K G ++ K D D++SD LAQ F +SV Sbjct: 246 DFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSV 302
>IDHP_SCHPO (O14254) Probable isocitrate dehydrogenase [NADP], mitochondrial| precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 418 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 QH ID MVA A+K G ++ K D D+ SD +AQ + +SV Sbjct: 257 QHRLIDDMVAQAIKSNGGFVWACKNYDGDVMSDVVAQAYGSLGLMTSV 304
>IDHP_BOVIN (Q04467) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 350 QHWQIDFMVAYAVKIEG*YIDVQK*ND-DIESDFLAQCFHMFSFRSSV 210 +H ID MVA +K G ++ K D D++SD LAQ F +SV Sbjct: 286 EHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSV 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,457,321 Number of Sequences: 219361 Number of extensions: 1346337 Number of successful extensions: 3106 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3103 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
