ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB182945.1| Triticum aestivum Wknox1d gene for KN1 homeobox ... 52 0.002
2gb|AC160467.3| Mus musculus chromosome 1, clone RP23-382C4, comp... 46 0.14
3dbj|AK082091.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 46 0.14
4emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chr... 46 0.14
5gb|AC102191.11| Mus musculus chromosome 1, clone RP24-244I20, co... 46 0.14
6ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 44 0.55
7emb|AL391216.10| Human DNA sequence from clone RP11-241C9 on chr... 44 0.55
8ref|XM_473117.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
9gb|AC109131.8| Homo sapiens 3 BAC RP11-296J4 (Roswell Park Cance... 42 2.2
10emb|BX000440.10| Zebrafish DNA sequence from clone CH211-14L9 in... 42 2.2
11emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
12emb|BX640407.9| Zebrafish DNA sequence from clone DKEY-208B10 in... 42 2.2
13gb|AC025188.8| Homo sapiens chromosome 5 clone CTD-2384B11, comp... 42 2.2
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
15dbj|AK070042.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
16emb|AL671765.6| Mouse DNA sequence from clone RP23-100L23 on chr... 42 2.2
17ref|NM_115624.2| Arabidopsis thaliana ATP binding / protein kina... 40 8.5
18gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, co... 40 8.5
19ref|NM_193988.1| Oryza sativa (japonica cultivar-group), predic... 40 8.5
20gb|AY017962.1| Oryza sativa microsatellite MRG0287 containing (A... 40 8.5
21gb|BC081557.1| Danio rerio zgc:86878, mRNA (cDNA clone MGC:86878... 40 8.5
22ref|XM_581103.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 8.5
23gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete s... 40 8.5
24gb|AC131665.4| Mus musculus BAC clone RP23-275B16 from chromosom... 40 8.5
25gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine k... 40 8.5
26gb|BT011681.1| Arabidopsis thaliana At3g57640 gene, complete cds 40 8.5
27gb|BT012262.1| Arabidopsis thaliana At3g57640 gene, complete cds 40 8.5
28gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complet... 40 8.5
29gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q2... 40 8.5
30emb|AL390859.18| Human DNA sequence from clone RP13-395E11 on ch... 40 8.5
31emb|AL138796.6| Human DNA sequence from clone RP4-791M13 on chro... 40 8.5
32emb|Z29534.1|HACGELSOL H.americanus mRNA for cytoplasmic gelsolin 40 8.5
33emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.5
34emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 ... 40 8.5
35gb|AC040904.4| Homo sapiens chromosome 17, clone RP11-619I22, co... 40 8.5
36gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete se... 40 8.5
37gb|AC159903.3| Pan troglodytes BAC clone CH251-459A3 from chromo... 40 8.5
38gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, com... 40 8.5
39gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, com... 40 8.5
40gb|AC023200.6| Homo sapiens chromosome 8, clone RP11-48D4, compl... 40 8.5
41ref|NM_001004601.1| Danio rerio zgc:86878 (zgc:86878), mRNA 40 8.5
42ref|XM_677977.1| PREDICTED: Danio rerio similar to Nuclear ubiqu... 40 8.5
43emb|BX548002.12| Zebrafish DNA sequence from clone CH211-170I2 i... 40 8.5
44ref|NG_004196.1| Homo sapiens olfactory receptor, family 5, subf... 40 8.5
45tpg|BK004789.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR... 40 8.5
46gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Canc... 40 8.5
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
49gb|AF132002.1|AF132002 Petunia x hybrida PHAP2B protein (Ap2B) m... 40 8.5
50gb|AY026761.1| Bufo bufo cystic fibrosis transmembrane conductan... 40 8.5
51gb|AC007402.3| Homo sapiens BAC clone RP11-545K2 from 2, complet... 40 8.5
52gb|AC156946.1| Pan troglodytes BAC clone CH251-342L21 from chrom... 40 8.5
53gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... 40 8.5
54dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
55gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosom... 40 8.5
56dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
57dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
58dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
59dbj|AK120188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
60emb|AL583743.3|CNS07EFW Human chromosome 14 DNA sequence BAC R-2... 40 8.5
61emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 8.5
62emb|AL645689.11| Zebrafish DNA sequence from clone XX-BAC7CSE, c... 40 8.5
63dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
64dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
65emb|AL929286.13| Zebrafish DNA sequence from clone CH211-117K10 ... 40 8.5
66gb|AC106334.8| Rattus norvegicus BAC CH230-185M3 (Children's Ho... 40 8.5
67gb|AC138329.4| Mus musculus BAC clone RP23-227L14 from 13, compl... 40 8.5
68emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chr... 40 8.5
69gb|AY234827.1| Zea mays cultivar B73 phytochrome B1 apoprotein (... 40 8.5
70dbj|AP002358.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5 
>dbj|AB182945.1| Triticum aestivum Wknox1d gene for KN1 homeobox protein, complete cds
          Length = 9086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                      
Query: 74   caactagaagtccaaattgatggaaaaggctagtcaatccacacatacacttcaacac 131
            |||| |||| ||| || ||||||||| ||||||  |||||||| ||||||||||||||
Sbjct: 7379 caaccagaactccgaaatgatggaaagggctaggaaatccacatatacacttcaacac 7436
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>gb|AC160467.3| Mus musculus chromosome 1, clone RP23-382C4, complete sequence
          Length = 181197

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 489    agaagctggacagtttggattctatca 515
              ||||| |||||||||||||||||||||
Sbjct: 122871 agaagatggacagtttggattctatca 122845
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>dbj|AK082091.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230005O04
           product:unclassifiable, full insert sequence
          Length = 1963

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 14  aggcaaaaggattaatatgacttgaca 40
           ||||||||||||||||||| |||||||
Sbjct: 835 aggcaaaaggattaatatgccttgaca 809
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>emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chromosome 2, complete
             sequence
          Length = 123205

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 14    aggcaaaaggattaatatgacttgaca 40
             ||||||||||||||||||| |||||||
Sbjct: 35280 aggcaaaaggattaatatgccttgaca 35306
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>gb|AC102191.11| Mus musculus chromosome 1, clone RP24-244I20, complete sequence
          Length = 190015

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 489   agaagctggacagtttggattctatca 515
             ||||| |||||||||||||||||||||
Sbjct: 78419 agaagatggacagtttggattctatca 78445
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>ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03268)
           partial mRNA
          Length = 2193

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 132 aaaataaaccacacaatataaa 153
           ||||||||||||||||||||||
Sbjct: 896 aaaataaaccacacaatataaa 917
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>emb|AL391216.10| Human DNA sequence from clone RP11-241C9 on chromosome 1 Contains the
             5' end of the ESSRG gene for estrogen-related receptor
             gamma and two CpG islands, complete sequence
          Length = 101542

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 219   tctaaaagaaaacatatgaaaa 240
             ||||||||||||||||||||||
Sbjct: 26085 tctaaaagaaaacatatgaaaa 26064
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>ref|XM_473117.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1407

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 294 atatcaaccttctattttcacagcatatgcaaccatg 330
           ||||| ||||||  |||||||||||||||| ||||||
Sbjct: 957 atatccaccttcacttttcacagcatatgccaccatg 921
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>gb|AC109131.8| Homo sapiens 3 BAC RP11-296J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118621

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 218   atctaaaagaaaacatatgaaaaca 242
             |||||||||||||||||| ||||||
Sbjct: 10318 atctaaaagaaaacatataaaaaca 10294
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>emb|BX000440.10| Zebrafish DNA sequence from clone CH211-14L9 in linkage group 16,
             complete sequence
          Length = 162906

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   aagaaaacatatgaaaacact 244
             |||||||||||||||||||||
Sbjct: 17574 aagaaaacatatgaaaacact 17594
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 294   atatcaaccttctattttcacagcatatgcaaccatg 330
             ||||| ||||||  |||||||||||||||| ||||||
Sbjct: 93754 atatccaccttcacttttcacagcatatgccaccatg 93718
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>emb|BX640407.9| Zebrafish DNA sequence from clone DKEY-208B10 in linkage group 12,
            complete sequence
          Length = 89034

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  aagaaaacatatgaaaacact 244
            |||||||||||||||||||||
Sbjct: 6028 aagaaaacatatgaaaacact 6008
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>gb|AC025188.8| Homo sapiens chromosome 5 clone CTD-2384B11, complete sequence
          Length = 143335

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   cacagcatatgcaaccatgaa 332
             |||||||||||||||||||||
Sbjct: 37363 cacagcatatgcaaccatgaa 37343
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 294      atatcaaccttctattttcacagcatatgcaaccatg 330
                ||||| ||||||  |||||||||||||||| ||||||
Sbjct: 25367195 atatccaccttcacttttcacagcatatgccaccatg 25367159
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>dbj|AK070042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038I06, full
            insert sequence
          Length = 1765

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 294  atatcaaccttctattttcacagcatatgcaaccatg 330
            ||||| ||||||  |||||||||||||||| ||||||
Sbjct: 1039 atatccaccttcacttttcacagcatatgccaccatg 1003
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>emb|AL671765.6| Mouse DNA sequence from clone RP23-100L23 on chromosome X, complete
              sequence
          Length = 191093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     attaatatgacttgacagaaa 44
              |||||||||||||||||||||
Sbjct: 176696 attaatatgacttgacagaaa 176676
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>ref|NM_115624.2| Arabidopsis thaliana ATP binding / protein kinase AT3G57640 mRNA,
            complete cds
          Length = 1258

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  gaagaagaatctctaaggaa 410
            ||||||||||||||||||||
Sbjct: 1112 gaagaagaatctctaaggaa 1093
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>gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aatatgacttgacagaaaaa 46
             ||||||||||||||||||||
Sbjct: 18193 aatatgacttgacagaaaaa 18212
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>ref|NM_193988.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2409

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  tacacctcaataagtgcagt 208
            ||||||||||||||||||||
Sbjct: 1181 tacacctcaataagtgcagt 1162
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>gb|AY017962.1| Oryza sativa microsatellite MRG0287 containing (AG)X17, closest to
           marker R108, genomic sequence
          Length = 234

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 taaaagaaaacatatgaaaa 240
           ||||||||||||||||||||
Sbjct: 43  taaaagaaaacatatgaaaa 62
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>gb|BC081557.1| Danio rerio zgc:86878, mRNA (cDNA clone MGC:86878 IMAGE:6904160),
            complete cds
          Length = 3182

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  aagagatgatcaagaaaata 181
            ||||||||||||||||||||
Sbjct: 2421 aagagatgatcaagaaaata 2402
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>ref|XM_581103.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family A,
            member 10 (LOC504909), mRNA
          Length = 3576

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 166  gatgatcaagaaaatagactgaatacac 193
            |||||||| ||||||| |||||||||||
Sbjct: 1426 gatgatcatgaaaatacactgaatacac 1399
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>gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete sequence
          Length = 111889

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    agaagtccaaattgatggaa 98
             ||||||||||||||||||||
Sbjct: 23955 agaagtccaaattgatggaa 23936
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>gb|AC131665.4| Mus musculus BAC clone RP23-275B16 from chromosome 3, complete sequence
          Length = 180421

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aatatgacttgacagaaaaa 46
             ||||||||||||||||||||
Sbjct: 20103 aatatgacttgacagaaaaa 20084
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>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein
             ABC1036 gene, complete cds
          Length = 29663

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 108   caatccacacatacacttcaacac 131
             ||||||||| ||||||||||||||
Sbjct: 17715 caatccacatatacacttcaacac 17738
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>gb|BT011681.1| Arabidopsis thaliana At3g57640 gene, complete cds
          Length = 1206

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  gaagaagaatctctaaggaa 410
            ||||||||||||||||||||
Sbjct: 1060 gaagaagaatctctaaggaa 1041
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>gb|BT012262.1| Arabidopsis thaliana At3g57640 gene, complete cds
          Length = 1071

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  gaagaagaatctctaaggaa 410
            ||||||||||||||||||||
Sbjct: 1046 gaagaagaatctctaaggaa 1027
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>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence
          Length = 113258

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 472  gcaggcccaaaatacacaga 491
            ||||||||||||||||||||
Sbjct: 6013 gcaggcccaaaatacacaga 5994
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>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete
             sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   ttggtcattaggtttgccaa 567
             ||||||||||||||||||||
Sbjct: 79555 ttggtcattaggtttgccaa 79536
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>emb|AL390859.18| Human DNA sequence from clone RP13-395E11 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 117526

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   accttctattttcacagcat 319
             ||||||||||||||||||||
Sbjct: 13396 accttctattttcacagcat 13415
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>emb|AL138796.6| Human DNA sequence from clone RP4-791M13 on chromosome 1 Contains the
             3' end of a novel gene and the 3' end of the PDE4DIP gene
             for phosphodiesterase 4D interacting protein (myomegalin),
             complete sequence
          Length = 120928

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 365   actcagggaagtctgcatgtttgt 388
             ||||||||||||||||| ||||||
Sbjct: 44315 actcagggaagtctgcaagtttgt 44338
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>emb|Z29534.1|HACGELSOL H.americanus mRNA for cytoplasmic gelsolin
          Length = 3221

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 caatccacacatacacttcaacac 131
           ||||||||||||||||| ||||||
Sbjct: 906 caatccacacatacactccaacac 883
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>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8
          Length = 94378

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   gaagaagaatctctaaggaa 410
             ||||||||||||||||||||
Sbjct: 65103 gaagaagaatctctaaggaa 65084
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>emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 in linkage group 11,
             complete sequence
          Length = 155980

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aagagatgatcaagaaaata 181
             ||||||||||||||||||||
Sbjct: 93592 aagagatgatcaagaaaata 93573
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>gb|AC040904.4| Homo sapiens chromosome 17, clone RP11-619I22, complete sequence
          Length = 173651

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  gcatgtttgtttgaagaaga 398
            ||||||||||||||||||||
Sbjct: 1681 gcatgtttgtttgaagaaga 1700
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>gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete sequence
          Length = 127094

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    agaagtccaaattgatggaa 98
             ||||||||||||||||||||
Sbjct: 20187 agaagtccaaattgatggaa 20206
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>gb|AC159903.3| Pan troglodytes BAC clone CH251-459A3 from chromosome unknown, complete
              sequence
          Length = 216963

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    ctattttcacagcatatgca 324
              ||||||||||||||||||||
Sbjct: 201364 ctattttcacagcatatgca 201383
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>gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, complete sequence
          Length = 135784

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   gcatgtttgtttgaagaaga 398
             ||||||||||||||||||||
Sbjct: 72399 gcatgtttgtttgaagaaga 72380
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>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   ttggtcattaggtttgccaa 567
             ||||||||||||||||||||
Sbjct: 40193 ttggtcattaggtttgccaa 40212
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>gb|AC023200.6| Homo sapiens chromosome 8, clone RP11-48D4, complete sequence
          Length = 159563

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    ttggtcattaggtttgccaa 567
              ||||||||||||||||||||
Sbjct: 133139 ttggtcattaggtttgccaa 133158
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>ref|NM_001004601.1| Danio rerio zgc:86878 (zgc:86878), mRNA
          Length = 3182

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  aagagatgatcaagaaaata 181
            ||||||||||||||||||||
Sbjct: 2421 aagagatgatcaagaaaata 2402
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>ref|XM_677977.1| PREDICTED: Danio rerio similar to Nuclear ubiquitous casein and
            cyclin-dependent kinases substrate (P1), transcript
            variant 1 (LOC572626), mRNA
          Length = 3170

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  aagagatgatcaagaaaata 181
            ||||||||||||||||||||
Sbjct: 2443 aagagatgatcaagaaaata 2424
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>emb|BX548002.12| Zebrafish DNA sequence from clone CH211-170I2 in linkage group 25,
             complete sequence
          Length = 149569

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   acaaaataaaccacacaatataaa 153
             ||||||||||||| ||||||||||
Sbjct: 30787 acaaaataaaccaaacaatataaa 30764
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>ref|NG_004196.1| Homo sapiens olfactory receptor, family 5, subfamily BR, member 1
            pseudogene (OR5BR1P) on chromosome 11
          Length = 1530

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 30   atgacttgacagaaaaagttgtca 53
            |||||||||||||||||| |||||
Sbjct: 1088 atgacttgacagaaaaaggtgtca 1065
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>tpg|BK004789.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR11-243 pseudogene,
           complete sequence
          Length = 887

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 30  atgacttgacagaaaaagttgtca 53
           |||||||||||||||||| |||||
Sbjct: 745 atgacttgacagaaaaaggtgtca 722
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>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 198476

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    gcaggcccaaaatacacaga 491
              ||||||||||||||||||||
Sbjct: 172481 gcaggcccaaaatacacaga 172462
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 66       aagccacacaactagaagtc 85
                ||||||||||||||||||||
Sbjct: 12664029 aagccacacaactagaagtc 12664048
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      tacacctcaataagtgcagt 208
                ||||||||||||||||||||
Sbjct: 14455867 tacacctcaataagtgcagt 14455848



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 221      taaaagaaaacatatgaaaa 240
                ||||||||||||||||||||
Sbjct: 10837666 taaaagaaaacatatgaaaa 10837647
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>gb|AF132002.1|AF132002 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds
          Length = 1761

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   acagaaaaagttgtcaagtttcat 61
            ||||| ||||||||||||||||||
Sbjct: 1583 acagacaaagttgtcaagtttcat 1560
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>gb|AY026761.1| Bufo bufo cystic fibrosis transmembrane conductance regulator (CFTR)
            mRNA, complete cds
          Length = 4401

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  caaaatacacagaagctgga 498
            ||||||||||||||||||||
Sbjct: 3614 caaaatacacagaagctgga 3633
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>gb|AC007402.3| Homo sapiens BAC clone RP11-545K2 from 2, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    ctattttcacagcatatgca 324
              ||||||||||||||||||||
Sbjct: 163323 ctattttcacagcatatgca 163304
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>gb|AC156946.1| Pan troglodytes BAC clone CH251-342L21 from chromosome unknown, complete
              sequence
          Length = 170162

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    ctattttcacagcatatgca 324
              ||||||||||||||||||||
Sbjct: 142404 ctattttcacagcatatgca 142385
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>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   tttgccaatctcaaataact 579
             ||||||||||||||||||||
Sbjct: 51514 tttgccaatctcaaataact 51533
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>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0025P13
          Length = 133242

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   taaaagaaaacatatgaaaa 240
             ||||||||||||||||||||
Sbjct: 24682 taaaagaaaacatatgaaaa 24663
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>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   gcaggcccaaaatacacaga 491
             ||||||||||||||||||||
Sbjct: 94247 gcaggcccaaaatacacaga 94228
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>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025H06
          Length = 151547

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tacacctcaataagtgcagt 208
              ||||||||||||||||||||
Sbjct: 117264 tacacctcaataagtgcagt 117245
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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tacacctcaataagtgcagt 208
             ||||||||||||||||||||
Sbjct: 15180 tacacctcaataagtgcagt 15161
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>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0041C07
          Length = 179047

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     aagccacacaactagaagtc 85
              ||||||||||||||||||||
Sbjct: 129967 aagccacacaactagaagtc 129986
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>dbj|AK120188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034P09, full
            insert sequence
          Length = 4265

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  tacacctcaataagtgcagt 208
            ||||||||||||||||||||
Sbjct: 1392 tacacctcaataagtgcagt 1373
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>emb|AL583743.3|CNS07EFW Human chromosome 14 DNA sequence BAC R-236M11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166462

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 289   tctatatatcaaccttctattttc 312
             ||||||||| ||||||||||||||
Sbjct: 87345 tctatatatgaaccttctattttc 87322
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>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 289    tctatatatcaaccttctattttc 312
              ||||||||| ||||||||||||||
Sbjct: 157843 tctatatatgaaccttctattttc 157866
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>emb|AL645689.11| Zebrafish DNA sequence from clone XX-BAC7CSE, complete sequence
          Length = 82848

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   acaaaataaaccacacaatataaa 153
             ||||||||||||| ||||||||||
Sbjct: 65120 acaaaataaaccaaacaatataaa 65097
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>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete
            sequence
          Length = 177882

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  tcaatgtcatcattctattt 281
            ||||||||||||||||||||
Sbjct: 9787 tcaatgtcatcattctattt 9768
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>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete
              sequence
          Length = 177483

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    tcaatgtcatcattctattt 281
              ||||||||||||||||||||
Sbjct: 100667 tcaatgtcatcattctattt 100648
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>emb|AL929286.13| Zebrafish DNA sequence from clone CH211-117K10 in linkage group 11,
              complete sequence
          Length = 168222

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aagagatgatcaagaaaata 181
              ||||||||||||||||||||
Sbjct: 108307 aagagatgatcaagaaaata 108326
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>gb|AC106334.8| Rattus norvegicus  BAC CH230-185M3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 206745

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aagatctaaaagaaaacata 234
             ||||||||||||||||||||
Sbjct: 31453 aagatctaaaagaaaacata 31472
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>gb|AC138329.4| Mus musculus BAC clone RP23-227L14 from 13, complete sequence
          Length = 240321

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    aaccacacaatataaactcg 157
              ||||||||||||||||||||
Sbjct: 170633 aaccacacaatataaactcg 170614
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>emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chromosome 4, complete
              sequence
          Length = 166965

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    aaagaaaacatatgaaaacactgt 246
              ||||||||||||| ||||||||||
Sbjct: 119162 aaagaaaacatattaaaacactgt 119185
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>gb|AY234827.1| Zea mays cultivar B73 phytochrome B1 apoprotein (phyB1) gene,
            complete cds; and Ty3/gypsy-like retrotransposon,
            complete sequence
          Length = 13645

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 104  tagtcaatccacacatacacttcaacac 131
            ||||||||||||  ||||||||||||||
Sbjct: 4530 tagtcaatccacttatacacttcaacac 4503



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 91   tgatggaaaaggctagtcaatccacacatacacttcaaca 130
            |||||| ||| | |||| ||||||| ||||||||||||||
Sbjct: 4315 tgatgggaaaagatagttaatccactcatacacttcaaca 4276
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>dbj|AP002358.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1036E20, complete
              sequences
          Length = 190904

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     atgacttgacagaaaaagttgtca 53
              |||||||||||||||||| |||||
Sbjct: 152647 atgacttgacagaaaaaggtgtca 152670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,080,925
Number of Sequences: 3902068
Number of extensions: 7080925
Number of successful extensions: 139508
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139220
Number of HSP's gapped (non-prelim): 288
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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