ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal15h13 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 167 bits (424), Expect = 5e-42 Identities = 78/79 (98%), Positives = 79/79 (100%) Frame = -3 Query: 237 VLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 58 VLRVKLIMKEG+KFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL Sbjct: 266 VLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 325 Query: 57 EMDGQFDRLDELIYVESHL 1 EMDGQFDRLDELIYVESHL Sbjct: 326 EMDGQFDRLDELIYVESHL 344
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 153 bits (387), Expect = 1e-37 Identities = 69/79 (87%), Positives = 76/79 (96%) Frame = -3 Query: 237 VLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 58 VLRV++I KEGVKFFNPVYLFDEGSTI+WIPCGRKLTCSYPGIKFSYGPDT++G EV+V+ Sbjct: 264 VLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVV 323 Query: 57 EMDGQFDRLDELIYVESHL 1 EMDG FDRLDELIYVESHL Sbjct: 324 EMDGMFDRLDELIYVESHL 342
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 151 bits (382), Expect = 4e-37 Identities = 70/79 (88%), Positives = 76/79 (96%) Frame = -3 Query: 237 VLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 58 VLRV+LIMKEGVK+F+PVYLFDEGSTI+WIPCGRKLTCSYPGIKF+Y PD+YF EVSVL Sbjct: 258 VLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVL 317 Query: 57 EMDGQFDRLDELIYVESHL 1 EMDGQFDRLDELIYVESHL Sbjct: 318 EMDGQFDRLDELIYVESHL 336
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 151 bits (381), Expect = 5e-37 Identities = 69/79 (87%), Positives = 75/79 (94%) Frame = -3 Query: 237 VLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 58 VLRV+LI KEGV++F+PVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPDTYFG EV+VL Sbjct: 259 VLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVL 318 Query: 57 EMDGQFDRLDELIYVESHL 1 EMDGQFDRLDELIYVESHL Sbjct: 319 EMDGQFDRLDELIYVESHL 337
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 145 bits (365), Expect = 4e-35 Identities = 66/78 (84%), Positives = 74/78 (94%) Frame = -3 Query: 234 LRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLE 55 LRV+LIMKEG K F+PVYLFDEGSTI+WIPCGRKLTCS+PGIK YGPDT++GQEVSVLE Sbjct: 244 LRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLE 303 Query: 54 MDGQFDRLDELIYVESHL 1 MDGQFD+L+ELIYVESHL Sbjct: 304 MDGQFDKLEELIYVESHL 321
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 130 bits (326), Expect = 1e-30 Identities = 55/79 (69%), Positives = 69/79 (87%) Frame = -3 Query: 237 VLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVL 58 +LRV+L+ KEGVKFF P YLFDEGSTI+W PCGRKLTC+YPGIK YGPD + G EVS+L Sbjct: 198 LLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLL 257 Query: 57 EMDGQFDRLDELIYVESHL 1 E+DG+F+ L+E++YVE+HL Sbjct: 258 EVDGRFENLEEMVYVENHL 276
>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) (Fragments) Length = 35 Score = 32.3 bits (72), Expect = 0.34 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -3 Query: 120 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 34 Y +KF YG T +VSVLEMDGQFDR Sbjct: 8 YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35
>CN101_MOUSE (Q8BMD6) Protein C14orf101 homolog| Length = 703 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 160 HQLDPLWKKAYMLLPW 113 H+ DP WKK Y L PW Sbjct: 522 HEGDPTWKKDYSLWPW 537
>GLGX_SALTI (Q8Z234) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon| protein glgX) Length = 654 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -3 Query: 183 YLFDEGSTINWIPCGRKLTCSYPGI 109 ++ D+G NW CG L S+PG+ Sbjct: 289 WIRDDGDYHNWTGCGNTLNLSHPGV 313
>GLGX_SALTY (Q8ZLG6) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon| protein glgX) Length = 658 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -3 Query: 183 YLFDEGSTINWIPCGRKLTCSYPGI 109 ++ D+G NW CG L S+PG+ Sbjct: 289 WIRDDGDYHNWTGCGNTLNLSHPGV 313
>CN101_HUMAN (Q9NX78) Protein C14orf101| Length = 707 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 160 HQLDPLWKKAYMLLPW 113 H+ DP WKK Y L PW Sbjct: 526 HEGDPTWKKNYSLWPW 541
>EPHA6_HUMAN (Q9UF33) Ephrin type-A receptor 6 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EHK-2) (EPH homology kinase 2) Length = 1035 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -3 Query: 126 CSYPGIKFSYGPDTYFGQEVSVLEMDGQFD 37 C +PGIK PDTY ++V E + D Sbjct: 597 CKFPGIKTYIDPDTYEDPSLAVHEFAKEID 626 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,184,443 Number of Sequences: 219361 Number of extensions: 698022 Number of successful extensions: 1643 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1643 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
