ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 193 1e-49
2RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 147 6e-36
3RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 143 1e-34
4RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 142 2e-34
5RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 100 1e-21
6RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 97 7e-21
7RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 96 2e-20
8RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 95 5e-20
9RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 90 1e-18
10RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 90 1e-18
11RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 89 2e-18
12RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 86 2e-17
13RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 86 3e-17
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 82 3e-16
15RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 55 5e-08
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 44 7e-05
17S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B ... 31 0.85
18ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2... 30 1.1
19GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 30 1.4
20CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like m... 30 1.9
21S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (S... 30 1.9
22LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor 28 4.2
23S20AA_XENLA (Q68F35) Sodium-dependent phosphate transporter 1-A ... 28 4.2
24YRAJ_ECOLI (P42915) Hypothetical outer membrane usher protein yr... 28 4.2
25YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19... 28 7.2
26PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I... 27 9.4
27DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleot... 27 9.4
28DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 27 9.4
29DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 27 9.4
30DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 27 9.4
31YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c 27 9.4
32GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precu... 27 9.4

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  193 bits (490), Expect = 1e-49
 Identities = 93/96 (96%), Positives = 94/96 (97%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGK 184
           G VTFEQPK+TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQ AMKTGSFYGK
Sbjct: 369 GPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGK 428

Query: 183 GAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 76
           GAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 429 GAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  147 bits (371), Expect = 6e-36
 Identities = 69/96 (71%), Positives = 82/96 (85%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGK 184
           G   FEQP++T EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN  A+  G+FYGK
Sbjct: 379 GPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGK 438

Query: 183 GAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 76
           GAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 439 GAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  143 bits (360), Expect = 1e-34
 Identities = 67/94 (71%), Positives = 80/94 (85%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGK 184
           G   FEQP++T++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+ A+  G+F+GK
Sbjct: 377 GPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGK 436

Query: 183 GAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 82
            AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 437 AAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  142 bits (359), Expect = 2e-34
 Identities = 70/98 (71%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGK 184
           G  +FEQPK+T++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN  A+K G+FYG 
Sbjct: 379 GPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGG 438

Query: 183 GAQQ--GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 76
            A Q  G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 439 QAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 99.8 bits (247), Expect = 1e-21
 Identities = 46/60 (76%), Positives = 54/60 (90%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGK 184
           G  TF+QPK+T+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN  AMKTG+FYGK
Sbjct: 366 GPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425



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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 46/59 (77%), Positives = 53/59 (89%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYG 187
           G  TFEQPK+T+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN  AM TG+FYG
Sbjct: 379 GPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437



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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 45/58 (77%), Positives = 53/58 (91%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFY 190
           G  TFEQPKIT+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+ AMKTGSF+
Sbjct: 375 GPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432



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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 44/59 (74%), Positives = 53/59 (89%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYG 187
           G   FEQPK+T+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN  AMKTGSFYG
Sbjct: 369 GPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427



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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 43/57 (75%), Positives = 51/57 (89%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSF 193
           G  TFEQPK+TVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN  A+ TG+F
Sbjct: 383 GPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439



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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 52/57 (91%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSF 193
           G  TFEQPK+T++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQ A+K G+F
Sbjct: 379 GPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435



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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFY 190
           G  TFEQPK+T+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN  A+  GSF+
Sbjct: 383 GPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440



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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTG 199
           G  TFEQPK+T+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN  A+ TG
Sbjct: 378 GPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432



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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 38/58 (65%), Positives = 54/58 (93%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFY 190
           G  TF+QPK++++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+ A+K+GSF+
Sbjct: 381 GPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438



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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 38/58 (65%), Positives = 51/58 (87%)
 Frame = -1

Query: 363 GXVTFEQPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFY 190
           G  TF+QPK+T++KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+ A+K+GSF+
Sbjct: 383 GPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440



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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 24/31 (77%), Positives = 30/31 (96%)
 Frame = -1

Query: 354 TFEQPKITVEKLLEYGHMLVQEQDNVKRVQL 262
           TF+QPK+T+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 379 TFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409



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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = -1

Query: 342 PKITVEK--LLEYGHMLVQEQDNVKRVQLADTYMSQAAL 232
           PK++++   L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 356 PKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394



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>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier|
           family 20 member 1-B)
          Length = 685

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 79  GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRXLVSITQSCLAHV 252
           G++   ++AP  W++VLG ++     F  G + +  SF   GT++   +V++ Q+C+   
Sbjct: 15  GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69

Query: 253 GVSKLHTLDIVLL 291
             S   T+  VLL
Sbjct: 70  -ASIFETVGSVLL 81



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>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 23) (DHHC-23)
          Length = 409

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +2

Query: 149 PSGTGKVPCCAPLP*KEPVFIAXWLASPRAAWLM*VSASCT-RLTLSCSWTSMCPYSSSF 325
           P G+ K+P  +P   KE       L  P  AW   +   C  R+   C W + C   S+ 
Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSCVGESNH 301

Query: 326 STVI 337
              I
Sbjct: 302 QAFI 305



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>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 254 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 358
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453



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>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 202 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 95
           +FL R RS  R  AR     R K Q LRPNG E+RR
Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169



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>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier|
           family 20 member 1)
          Length = 685

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 61  KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRXLVSITQ 234
           +V    G++   ++ P  W++VLG ++     F  G + +  SF   GT++   +V++ Q
Sbjct: 9   EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65

Query: 235 SCLAHVGVSKLHTLDIVLL 291
           +C+     S   T+  VLL
Sbjct: 66  ACIL---ASIFETVGSVLL 81



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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 93   CRRRSLPLGRSSWHFGRCNLP 155
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134



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>S20AA_XENLA (Q68F35) Sodium-dependent phosphate transporter 1-A (Solute carrier|
           family 20 member 1-A)
          Length = 685

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 97  VVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRXLVSITQSCLAHVGVSKLH 270
           ++AP  W++VLG ++     F  G + +  SF   GT++   +V++ Q+C+     S   
Sbjct: 21  IMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL---ASIFE 74

Query: 271 TLDIVLL 291
           T+  VLL
Sbjct: 75  TVGSVLL 81



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>YRAJ_ECOLI (P42915) Hypothetical outer membrane usher protein yraJ precursor|
          Length = 838

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = -1

Query: 345 QPKITVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGKGAQQGT 166
           QP+ TVE+L E G  +    D +  +   D     + +    Q    T + +    QQ  
Sbjct: 103 QPQFTVEQLRELGIKV----DEIPALAEKD---DDSVINSLEQIIPGTAAEFDFNHQQLN 155

Query: 165 LPVPEGCTDQNAKNYDPTARSDDG 94
           L +P+    ++A+ Y   +R DDG
Sbjct: 156 LSIPQIALYRDARGYVSPSRWDDG 179



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>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 159  VPEGCTDQNAKNYDPTARSD 100
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402



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>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 19  WMRCGLX*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 180
           ++RCG    +  ++K       K  AVV  C    VL   G+L GA  R+     +C
Sbjct: 57  YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113



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>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 297 VQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 130
           V E    + +++   Y+++ ++ D+    +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADSADLVV-LGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 297 VQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 130
           V E    + +++   Y+++ ++ D+    +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADSADLVV-LGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 297 VQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 130
           V E    + +++   Y+++ ++ D+    +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADSADLVV-LGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 297 VQEQDNVKRVQLADTYMSQAALGDANQXAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 130
           V E    + +++   Y+++ ++ D+    +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADSADLVV-LGAYYGKGAKGGIMAVFLMGCYDDES 442



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>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 45  KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 149
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38



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>GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precursor|
           (G-protein coupled hepta-helical receptor Ig-hepta)
          Length = 1349

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 254 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 358
           + +SC+  TL    T  CP  SS +TVI+ C  V+
Sbjct: 418 LESSCSTYTLKADGTQ-CPSGSSGTTVIYTCEFVS 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,328,205
Number of Sequences: 219361
Number of extensions: 854551
Number of successful extensions: 2172
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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