>VCAP_HHV6U (P17887) Major capsid protein (MCP)|
          Length = 1345

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
 Frame = +2

Query: 23  DTATYVETRVIIWQHSSYEPLS-HFFLTATYL----------VLDRLYNYNNIHTVYRQH 169
           D     ET +++ +HS   P++  F L+A  L          V+D++ N N +HTV R  
Sbjct: 105 DVTASKETTIMVAKHSEKHPINISFDLSAACLEHLENTFKNTVIDQILNINALHTVLRSL 164

Query: 170 QAERTRISMSMVHVRRP----PAPPQITQLQL 253
           +     +   ++H         +PPQ   L +
Sbjct: 165 KNSADSLERGLIHAFMQTLLRKSPPQFIVLTM 196

>SHC1_HUMAN (P29353) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 583

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 215 RPPAPPQITQL--QLRGEPWIQGR 280
           R P PPQ   +  QLRGEPW  G+
Sbjct: 469 RVPPPPQSVSMAEQLRGEPWFHGK 492

>GLNA_SULAC (Q9HH09) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 473

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 282 LLPWIQGSPRS*SWVIWGGAGGR 214
           L+PW+QG  R  + V WGG  GR
Sbjct: 83  LIPWMQGVARVLTKVFWGGGKGR 105

>FUT13_ARATH (Q9C8W3) Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M)|
           (Galactoside 3(4)-L-fucosyltransferase) (FucTC)
           (AtFUT13)
          Length = 401

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 236 FGVGRVAVEHEPCSSKSWCVLPDVVCILYVCYC 138
           FG G++ ++H     K W  +PD +  LY C C
Sbjct: 94  FGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRC 126

>VCAP_HHV7J (P52347) Major capsid protein (MCP)|
          Length = 1345

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
 Frame = +2

Query: 23  DTATYVETRVIIWQHSSYEP-----------LSHFFLTATYLVLDRLYNYNNIHTVYRQH 169
           D     ET V++ ++S   P           L+H   T    +LD++ N N IHTV R  
Sbjct: 105 DVTAPKETTVLVTKYSEKHPINISFELSAACLAHLENTFKNTILDQMLNINAIHTVLRSL 164

Query: 170 QAERTRISMSMVH----VRRPPAPPQ 235
           +     +   +++         APPQ
Sbjct: 165 KNSADSLQRGLIYAFIKTILKKAPPQ 190

>YR603_MIMIV (Q5UP60) Putative ankyrin repeat protein R603|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +2

Query: 35  YVETRVIIWQHSSYEPLSHFFLTATYLVLDRLYNYNNIHTVYR 163
           Y+E  ++I   S+Y  LS  F    YLV+D+L NYNN  T YR
Sbjct: 14  YLEKFMVI---SNYRSLS--FKKQKYLVIDKLSNYNN--TDYR 49

>SHC1_MOUSE (P98083) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 579

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 215 RPPAPPQITQL--QLRGEPWIQGR 280
           R P PPQ   +  QL+GEPW  G+
Sbjct: 465 RVPPPPQSMSMAEQLQGEPWFHGK 488

>SYC_BACLD (Q65PC8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 467

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 77  EPLSHFFLTATYLVLDR------LYNYNNIHTVYRQHQAERTRISMSMVHVRRP 220
           +P + ++L   Y+ +D       L N+  +H + ++H  +  R  M  VH R P
Sbjct: 248 KPFAKYWLHNGYINIDNEKMSKSLGNFVLVHDIIKEHDPQVLRFFMLSVHYRHP 301

>SYC_BACSU (Q06752) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 466

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 59  WQHSSYEPLSHFFLTATYLVLDRLYNYNNIHTVYRQHQAERTRISMSMVHVRRP 220
           W H+ Y  + +  ++ +      L N+  +H + +QH  +  R  M  VH R P
Sbjct: 254 WLHNGYINIDNEKMSKS------LGNFVLVHDIIKQHDPQLLRFFMLSVHYRHP 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,763,235
Number of Sequences: 219361
Number of extensions: 651380
Number of successful extensions: 1636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)