ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1) ... 30 4.6
2CT096_HUMAN (Q9NUD7) Protein C20orf96 30 6.1

>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)|
           (Preprospasmolysin)
          Length = 400

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 390 TDDQKNDPEHLPTSDITPPCPRSEKELTKETITATHT 500
           T +   +P   PT+D TPP      E T ET T T T
Sbjct: 247 TPETTTEPTTTPTTDTTPPTLPPTPETTTETTTETTT 283



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>CT096_HUMAN (Q9NUD7) Protein C20orf96|
          Length = 363

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +3

Query: 96  RPGTHPRSXXXXXXXLQMNNQRARVK*PLHVPATGVVVICEPQGTQQSHFQRYQD*QSLM 275
           +P T P                 RV+   H   T VV  C+P+  ++ H +R  D   + 
Sbjct: 36  KPSTLPPVQQANSLHTSKMKTLTRVQPVFHFKPTTVVTSCQPKNPRELHRRRKLDPGKMH 95

Query: 276 GEVWL 290
            ++WL
Sbjct: 96  AKIWL 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,549,437
Number of Sequences: 219361
Number of extensions: 1180627
Number of successful extensions: 2437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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