ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7b03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 848 bits (428), Expect = 0.0 Identities = 520/548 (94%), Gaps = 3/548 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaa-taagaacgacg 71 |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 11673 tcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacg 11614 Query: 72 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaag 131 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 11613 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaag 11554 Query: 132 aagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtacct 191 |||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 11553 aagaagcaactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacct 11494 Query: 192 gcaactggtgttgtngtaatctgtgagccacagggg-actcagcaatctcatttccaaag 250 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 11493 gcaactggtgttgtagtaatctgtgagccacagggggactcagcaatctcatttccaaag 11434 Query: 251 gtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcagc 310 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 11433 gtatcaagactagcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagcagc 11374 Query: 311 gactaagcatatatttgatggctaa-cttacgagtaccagtaatcagagggggaagatct 369 | ||||||||||||||| ||||||| ||||||||||| || ||| ||||||||||||||| Sbjct: 11373 ggctaagcatatatttggtggctaaacttacgagtacaagaaataagagggggaagatct 11314 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 11313 acgcataacggacgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgt 11254 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 11253 cagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcacgg 11194 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 |||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct: 11193 ttacgcacacagttggcatgttttaattaagttaagttcaagttatctagaaccagtgtt 11134 Query: 550 aaacaaag 557 |||||||| Sbjct: 11133 aaacaaag 11126 Score = 652 bits (329), Expect = 0.0 Identities = 456/495 (92%), Gaps = 6/495 (1%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||| | Sbjct: 4135 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacat 4076 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 4075 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 4016 Query: 133 agaag---canctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 ||||| || ||||||| ||||||||||||||||||||| |||| |||||||| ||||| Sbjct: 4015 agaagaggcaactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtac 3956 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3955 ctgcaactggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaa 3896 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 3895 ggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtgaggttgcagcag 3836 Query: 310 cgactaagcatatatttgatggct-aacttacgagtaccagtaatcagagggggaagatc 368 || ||||||||||| ||| ||||| |||||| |||||| || ||| ||| |||||||| | Sbjct: 3835 cggctaagcatatagttggtggctaaacttatgagtacaagaaataaga-ggggaagagc 3777 Query: 369 tgcgcataacggacgtgaattactgatgatcaaaagaatga-tcctgaacacctacctac 427 | |||||||||||||||| |||||||||||||| |||||| ||||||||||||||| || Sbjct: 3776 tacgcataacggacgtgagctactgatgatcaaatgaatgattcctgaacacctacccac 3717 Query: 428 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcac 487 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 3716 gtcagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcac 3657 Query: 488 ggctacgcacacagt 502 || ||| |||||||| Sbjct: 3656 ggttacccacacagt 3642
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 835 bits (421), Expect = 0.0 Identities = 513/545 (94%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct: 68209 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 68268 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 68269 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 68328 Query: 133 agaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtacctg 192 ||||||| |||||||||||||||||| |||||||||| |||| ||| |||| |||||||| Sbjct: 68329 agaagcaactccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctg 68388 Query: 193 caactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggt 252 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68389 caactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggt 68448 Query: 253 atcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcagcga 312 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 68449 atcaagactagcaaagctttatgggtgaggtatggttaagtggtgaggttgcagcagcga 68508 Query: 313 ctaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaagatctgcg 372 ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||| || || Sbjct: 68509 ctaagcatatatttggtggctaacttacgagtaccagaaataagaggggggagaactacg 68568 Query: 373 cataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgtcag 432 |||| || ||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| Sbjct: 68569 catagcgaacgtgaactacagatgaccaaatgaatgatcctgaacacctacctacgtcag 68628 Query: 433 acataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacggcta 492 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || Sbjct: 68629 tcataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacattcacggtta 68688 Query: 493 cgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgttaaa 552 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 68689 cgcacacagttggcatattttaattaagttaacttcaagttatctagaaccagtgttaaa 68748 Query: 553 caaag 557 ||||| Sbjct: 68749 caaag 68753
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 819 bits (413), Expect = 0.0 Identities = 518/551 (94%), Gaps = 5/551 (0%) Strand = Plus / Plus Query: 15 aagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtcc 74 |||||| |||||||||||||||||| |||||||||| |||| |||| ||||||||||||| Sbjct: 16437 aagagtaagagcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgtcc 16496 Query: 75 atccttgctatcccaggctgccggcctggaacccatcctagatcga---aaaagaagaag 131 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 16497 atccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaagaag 16556 Query: 132 aagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtacct 191 |||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 16557 aagaagcaactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacct 16616 Query: 192 gcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaagg 251 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16617 gcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaagg 16676 Query: 252 tatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcagcg 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16677 tatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcagcg 16736 Query: 312 actaagcatatatttgatggct-aacttacgagtaccagtaatcaga-gggggaagatct 369 |||||||| |||||| |||| |||||||||||||||| ||| ||| |||||||||||| Sbjct: 16737 gctaagcatttatttggaggctaaacttacgagtaccagaaataagaggggggaagatct 16796 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 16797 acgcataacggacgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgt 16856 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 |||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| Sbjct: 16857 cagacataaccccaccgtgtcctcgatcggagaaggaacccacgaaagagacagtcacgg 16916 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 16917 ttacgcacacagttggcatgttttacttaagttaacttcaagttatctagaaccagtgtt 16976 Query: 550 aaacaaagctt 560 ||||||||||| Sbjct: 16977 aaacaaagctt 16987
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 799 bits (403), Expect = 0.0 Identities = 513/550 (93%), Gaps = 2/550 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||| Sbjct: 131501 tcaagagtaagagcagggtccgactacggaagaaaacaaacgagaaaagaagaacgacgt 131442 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| Sbjct: 131441 ccatccttgctatcccaggctgccgccctggaacccatcctagatcgatgaaggagaaga 131382 Query: 133 agaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtacctg 192 ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 131381 agaagcaactccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctg 131322 Query: 193 caactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggt 252 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 131321 caactggtgttgtagtaatctgtgagccacaggtgactcagcaatctcatttccaaaggt 131262 Query: 253 atcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcagcga 312 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 131261 atcaagactagcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagcagcgg 131202 Query: 313 ctaagcatatatttgatggctaacttacgagtaccagtaatcaga--gggggaagatctg 370 ||||||||| ||||| ||||||| | ||||||| || | | ||| |||||| ||||| Sbjct: 131201 ctaagcataaatttggtggctaaactccgagtacaagaattaagagggggggatgatcta 131142 Query: 371 cgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgtc 430 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 131141 cgcataacggatgtgaactactgatgatcaaatgaatgatcctgaacacctacctacgtc 131082 Query: 431 agacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacggc 490 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 131081 agacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcacggt 131022 Query: 491 tacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtta 550 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 131021 tacgcacacagttggcatattttaattaagttaacttcaagttatctagaaccagtgtta 130962 Query: 551 aacaaagctt 560 || ||||||| Sbjct: 130961 aaaaaagctt 130952 Score = 743 bits (375), Expect = 0.0 Identities = 506/549 (92%), Gaps = 4/549 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 327101 tcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaagaagaacgacgt 327042 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaag- 131 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 327041 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgatgaagaagg 326982 Query: 132 --aagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||| ||||||||||||||||||| ||||||| | |||| |||||||| ||||| Sbjct: 326981 agaagaagcaactccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtac 326922 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326921 ctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaa 326862 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 326861 ggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtgaggttgtagcag 326802 Query: 310 cgactaagcatatatttgatggct-aacttacgagtaccagtaatcagagggggaagatc 368 || |||||||| |||||| | ||| |||||| |||||| || | | |||||||| ||||| Sbjct: 326801 cggctaagcatttatttggtcgctaaacttatgagtacaagaagtaagaggggggagatc 326742 Query: 369 tgcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacg 428 | | ||||||||||||||| || || |||||||| ||||||||||||||||||||||||| Sbjct: 326741 tacacataacggacgtgaactattgttgatcaaatgaatgatcctgaacacctacctacg 326682 Query: 429 tcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacg 488 |||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| | Sbjct: 326681 tcagacataaccccaccgtgtcctcgatcgaagaaggaactcacgaaagagacagtcaag 326622 Query: 489 gctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgt 548 | |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 326621 gttacgcacacagttggcatattttaattaaattaacttcaagttatctagaaccagtgt 326562 Query: 549 taaacaaag 557 ||||||||| Sbjct: 326561 taaacaaag 326553 Score = 482 bits (243), Expect = e-133 Identities = 324/350 (92%), Gaps = 2/350 (0%) Strand = Plus / Minus Query: 213 tgtgagccacaggggactcagcaatctcatttccaaaggtatcaagactagcaaagctta 272 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 178659 tgtgagccacaggggactcagcaatctcatttcgaaaggtatcaagactagcaaagctta 178600 Query: 273 atgggtgaggtatggttaagtggtgaggttgcagcagcgactaagcatatatttgatggc 332 |||||||||| || ||||||||||||||||||||||||| ||||||||| ||||| |||| Sbjct: 178599 atgggtgaggcatagttaagtggtgaggttgcagcagcggctaagcataaatttggtggc 178540 Query: 333 taacttacgagtaccagtaatcagaggggg--aagatctgcgcataacggacgtgaatta 390 ||| | ||||||| || | | |||||||| | ||||| ||||||||||| ||||| || Sbjct: 178539 taaactccgagtacaagaattaagagggggggatgatctacgcataacggatgtgaacta 178480 Query: 391 ctgatgatcaaaagaatgatcctgaacacctacctacgtcagacataaccccaccgtgtc 450 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178479 ctgatgatcaaatgaatgatcctgaacacctacctacgtcagacataaccccaccgtgtc 178420 Query: 451 ctcgatcggagaaagaactcacgaaagagacaatcacggctacgcacacagtgggcatat 510 ||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| Sbjct: 178419 ctcgatcggagaaggaactcacgaaagagacagtcacggttacgcacacagttggcatat 178360 Query: 511 tttcattaagttaacttcaagttatctagaaccagtgttaaacaaagctt 560 ||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 178359 tttaattaagttaacttcaagttatctagaaccagtgttaaaaaaagctt 178310 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcg 458 ||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct: 182259 tgatcctgaacacctacctacgtcaatcataaccccaccgtgttcccgatcg 182310 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcg 458 ||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct: 159199 tgatcctgaacacctacctacgtcaatcataaccccaccgtgttcccgatcg 159250 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 |||||||||||||||||||||| || |||||||||||||||| Sbjct: 74485 tgatcctgaacacctacctacggcaatcataaccccaccgtgt 74443 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 |||||||||||||||||||||| || |||||||||||||||| Sbjct: 63680 tgatcctgaacacctacctacggcaatcataaccccaccgtgt 63638 Score = 50.1 bits (25), Expect = 0.008 Identities = 32/33 (96%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 207 gtaatctgtgagccacaggggactcagcaatct 239 |||||||||||||||| |||||||||||||||| Sbjct: 182075 gtaatctgtgagccac-ggggactcagcaatct 182106 Score = 50.1 bits (25), Expect = 0.008 Identities = 32/33 (96%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 207 gtaatctgtgagccacaggggactcagcaatct 239 |||||||||||||||| |||||||||||||||| Sbjct: 159015 gtaatctgtgagccac-ggggactcagcaatct 159046 Score = 46.1 bits (23), Expect = 0.12 Identities = 30/31 (96%), Gaps = 1/31 (3%) Strand = Plus / Plus Query: 209 aatctgtgagccacaggggactcagcaatct 239 |||||||||||||| |||||||||||||||| Sbjct: 162280 aatctgtgagccac-ggggactcagcaatct 162309 Score = 46.1 bits (23), Expect = 0.12 Identities = 30/31 (96%), Gaps = 1/31 (3%) Strand = Plus / Plus Query: 209 aatctgtgagccacaggggactcagcaatct 239 |||||||||||||| |||||||||||||||| Sbjct: 114503 aatctgtgagccac-ggggactcagcaatct 114532 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 aatgatcctgaacacctacctacgtc 430 ||||||||||||||||| |||||||| Sbjct: 162460 aatgatcctgaacacctgcctacgtc 162485 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 aatgatcctgaacacctacctacgtc 430 ||||||||||||||||| |||||||| Sbjct: 114683 aatgatcctgaacacctgcctacgtc 114708
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 773 bits (390), Expect = 0.0 Identities = 509/548 (92%), Gaps = 4/548 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct: 11014 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 10955 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcga---aaaagaaga 129 ||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| Sbjct: 10954 ccatccttgctatccgagggtgccggcctggaacccatcctagatcgatgaagaagaaga 10895 Query: 130 agaagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||||| ||||||||||||||||||||||||| ||| |||| | ||||| ||||| Sbjct: 10894 agaagaagcaactccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtac 10835 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 10834 ctgcaactggtgttgtagtaatctgtgagccacaggggactcaacaatctcatttccaaa 10775 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 10774 ggtatcaagactagcaaagctcaatgggtgaggcatggttaagtggtgaggttgcagcag 10715 Query: 310 cgactaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaagatct 369 || ||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||| Sbjct: 10714 cggctaagcatatatttggtggctaacttacgagtacaagaaataagagggggaagatct 10655 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 10654 acgcatagcggacgtgaactactgatgatc-aatgaatgatcctgaacacctacctacgt 10596 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 10595 cagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcacgg 10536 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||| Sbjct: 10535 ttacgcacacagttggcaagttttaattaagtaaacttcaagttatctagaaccagtgtt 10476 Query: 550 aaacaaag 557 |||||||| Sbjct: 10475 aaacaaag 10468 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 |||||||||||||||||||||| || |||||| ||||||||| Sbjct: 27014 tgatcctgaacacctacctacggcattcataactccaccgtgt 26972
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 767 bits (387), Expect = 0.0 Identities = 513/553 (92%), Gaps = 5/553 (0%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaa-cagacgagaaaataagaacgacg 71 |||||||| ||||||||||||||||| ||| ||||| || |||| |||| |||||||||| Sbjct: 3374 tcaagagtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacg 3433 Query: 72 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaag 131 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3434 tccatccttgctatcccaggctgccggcctggaacccatcctagatcgaagaagaagaag 3493 Query: 132 aagaag---canctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgta 188 |||||| || ||||| ||||||||||||||||||| ||| | | |||||||| |||| Sbjct: 3494 aagaagaagcaactccagatgaacaatcaacgcgctcacgtcgaataacctttacctgta 3553 Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaa 248 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3554 cctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaa 3613 Query: 249 aggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagca 308 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 3614 aggtatcaagactagcaaagcttaatgggtgaggcatggttaagtggtgagattgcagca 3673 Query: 309 gcgactaagcatatatttgatggctaa-cttacgagtaccagtaatcagagggggaagat 367 |||||||||||||||| || ||||||| |||||||||||||| ||| |||||||| |||| Sbjct: 3674 gcgactaagcatatatctggtggctaaacttacgagtaccagaaataagaggggggagat 3733 Query: 368 ctgcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctac 427 || ||||||||||||||||| ||| ||||| |||| ||||||||||||||||||| |||| Sbjct: 3734 ctacgcataacggacgtgaactacagatgaccaaatgaatgatcctgaacacctaactac 3793 Query: 428 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcac 487 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3794 gtcagtcataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacaatcac 3853 Query: 488 ggctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtg 547 || ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3854 ggttacgcacacggttggcatattttaattaagttaacttcaagttatctagaaccagtg 3913 Query: 548 ttaaacaaagctt 560 ||||||||||||| Sbjct: 3914 ttaaacaaagctt 3926
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 763 bits (385), Expect = 0.0 Identities = 510/551 (92%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||| ||||||||||||||||||||||| |||||||||| | |||||||| Sbjct: 37345 tcaagagtaagagcggggtccgactacggacgaaaacaaacgagaaaatga-aacgacgt 37403 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaag- 131 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 37404 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaaaaagg 37463 Query: 132 --aagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||| ||| ||||||||||||| ||||||||||| |||| |||||||| ||||| Sbjct: 37464 agaagaagcaactcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtac 37523 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37524 ctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaa 37583 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 37584 ggtatcaagactggcaaagcttaatgggtgaggaatggttaagtggtgaggttgcagcag 37643 Query: 310 cgactaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaagatct 369 |||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||| | Sbjct: 37644 cgactaagcatatatttggtggctaacttacgagtaccagaaataagaggggaaagatgt 37703 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 |||||| |||||||||| ||| ||||| |||| ||||||||| |||||||||||||||| Sbjct: 37704 acgcatagcggacgtgaactacagatgaccaaatgaatgatcccgaacacctacctacgt 37763 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 37764 cagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcacgg 37823 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 |||||||||||| | || |||| ||||| ||||||||||||||||||||||||||||| Sbjct: 37824 ttacgcacacagttgacaagttttaattaaattaacttcaagttatctagaaccagtgtt 37883 Query: 550 aaacaaagctt 560 ||||||||||| Sbjct: 37884 aaacaaagctt 37894
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 763 bits (385), Expect = 0.0 Identities = 507/547 (92%), Gaps = 4/547 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct: 10495 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 10436 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcga---aaaagaaga 129 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 10435 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 10376 Query: 130 agaagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||||| |||||||||||||||||| ||||||| || || | |||||||||||||| Sbjct: 10375 agaagaagcaactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtac 10316 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10315 ctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaa 10256 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 10255 ggtatcaagactagcaaagcttaatgggtgaggcatggttaggtggtgaggttgcagcag 10196 Query: 310 cgactaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaagatct 369 || ||||||||||||||| |||||| ||||||||||| || ||| |||| |||||||||| Sbjct: 10195 cggctaagcatatatttggtggctagcttacgagtacaagaaataagagtgggaagatct 10136 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 |||||| |||||||| | |||||||||||||| ||||||||| ||||||||||||||| Sbjct: 10135 acgcatagcggacgtg-actactgatgatcaaatgaatgatccgaaacacctacctacgt 10077 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct: 10076 cagacataaccccaccgtgtcctcgatcggagaaataactcatgaaagagacagtcacgg 10017 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 ||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 10016 ttacacacatagttagcatattttaattaagttaacttcaagttatctagaaccagtgtt 9957 Query: 550 aaacaaa 556 ||||||| Sbjct: 9956 aaacaaa 9950
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 763 bits (385), Expect = 0.0 Identities = 507/547 (92%), Gaps = 4/547 (0%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct: 2938 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 2879 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcga---aaaagaaga 129 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 2878 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 2819 Query: 130 agaagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||||| |||||||||||||||||| ||||||| || || | |||||||||||||| Sbjct: 2818 agaagaagcaactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtac 2759 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2758 ctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaa 2699 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 2698 ggtatcaagactagcaaagcttaatgggtgaggcatggttaggtggtgaggttgcagcag 2639 Query: 310 cgactaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaagatct 369 || ||||||||||||||| |||||| ||||||||||| || ||| |||| |||||||||| Sbjct: 2638 cggctaagcatatatttggtggctagcttacgagtacaagaaataagagtgggaagatct 2579 Query: 370 gcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgt 429 |||||| |||||||| | |||||||||||||| ||||||||| ||||||||||||||| Sbjct: 2578 acgcatagcggacgtg-actactgatgatcaaatgaatgatccgaaacacctacctacgt 2520 Query: 430 cagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacgg 489 ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct: 2519 cagacataaccccaccgtgtcctcgatcggagaaataactcatgaaagagacagtcacgg 2460 Query: 490 ctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtgtt 549 ||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2459 ttacacacatagttagcatattttaattaagttaacttcaagttatctagaaccagtgtt 2400 Query: 550 aaacaaa 556 ||||||| Sbjct: 2399 aaacaaa 2393
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 749 bits (378), Expect = 0.0 Identities = 510/554 (92%), Gaps = 6/554 (1%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||| ||||||||||||||| |||| |||| ||||||||||| Sbjct: 64905 tcaagagtaagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgt 64964 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcga---aaaagaaga 129 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 64965 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 65024 Query: 130 agaa---gaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatg 186 |||| |||||| ||||||||||||||||||| ||||||| | |||| | ||| | || Sbjct: 65025 agaagaagaagcaactccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctg 65084 Query: 187 tacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttcc 246 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 65085 tacctgcaactggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttcc 65144 Query: 247 aaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcag 306 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 65145 aaaggtatcaagactagcaaagcttaatgggtgaggtatggttaaatggtgaggttgcag 65204 Query: 307 cagcgactaagcatatatttgatggctaacttacgagtaccagtaatcagagggggaaga 366 ||||| ||||||||||||||| |||||||||||||||||| || || |||||||||||| Sbjct: 65205 cagcggctaagcatatatttggtggctaacttacgagtacaagaaacaagagggggaaga 65264 Query: 367 tctgcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctaccta 426 ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| Sbjct: 65265 tctacgcataacggacgtgaactactcatgatcaaaagactgatcctgaacacctaccta 65324 Query: 427 cgtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatca 486 |||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||| Sbjct: 65325 cgtcagacataaccccacagtgtcctcgatcggagaaggaactcacgatggagacagtca 65384 Query: 487 cggctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagt 546 ||| |||||||||| | |||| |||| |||||||||||||||||||||||||||||||| Sbjct: 65385 cggttacgcacacaattggcaagttttaattaagttaacttcaagttatctagaaccagt 65444 Query: 547 gttaaacaaagctt 560 |||||||||||||| Sbjct: 65445 gttaaacaaagctt 65458
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 735 bits (371), Expect = 0.0 Identities = 510/553 (92%), Gaps = 6/553 (1%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||| Sbjct: 102837 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgt 102896 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatc---gaaaaagaaga 129 |||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 102897 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgatgatgaaga 102956 Query: 130 agaagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 |||||||||| || |||||||||||||||||||||| ||| || | |||||||| ||||| Sbjct: 102957 agaagaagcaacttcaaatgaacaatcaacgcgctcacgtcaaataacctttacctgtac 103016 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 103017 ctgcaactggtgttgtagtaatcggtgagccacaggggactcagcaatctcatttccaaa 103076 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 103077 ggtatcaagactagcaaagcttaatgggtgaggcatggttaagtggtgaggttgcagcag 103136 Query: 310 cgactaagcatatatttgatggct-aacttacgagtaccagtaatcaga-gggggaagat 367 || ||||||||||||||| ||||| ||||||||||||| || ||| ||| |||||||||| Sbjct: 103137 cggctaagcatatatttggtggctaaacttacgagtacaagaaataagaggggggaagat 103196 Query: 368 ctgcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctac 427 || |||||| ||| |||| | |||||||||||||| || ||||||||||||| ||||||| Sbjct: 103197 ctacgcatagcgggcgtg-actactgatgatcaaatgactgatcctgaacacatacctac 103255 Query: 428 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcac 487 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 103256 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacagtcac 103315 Query: 488 ggctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaaccagtg 547 || |||||||| ||| |||||||||| |||| ||||||||||||| ||||||||||| || Sbjct: 103316 ggttacgcacaaagttggcatattttaattacgttaacttcaagtcatctagaaccaatg 103375 Query: 548 ttaaacaaagctt 560 ||||||||||||| Sbjct: 103376 ttaaacaaagctt 103388
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 652 bits (329), Expect = 0.0 Identities = 456/495 (92%), Gaps = 6/495 (1%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||| | Sbjct: 4135 tcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacat 4076 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 4075 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 4016 Query: 133 agaag---canctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 ||||| || ||||||| ||||||||||||||||||||| |||| |||||||| ||||| Sbjct: 4015 agaagaggcaactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtac 3956 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3955 ctgcaactggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaa 3896 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 3895 ggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtgaggttgcagcag 3836 Query: 310 cgactaagcatatatttgatggct-aacttacgagtaccagtaatcagagggggaagatc 368 || ||||||||||| ||| ||||| |||||| |||||| || ||| ||| |||||||| | Sbjct: 3835 cggctaagcatatagttggtggctaaacttatgagtacaagaaataaga-ggggaagagc 3777 Query: 369 tgcgcataacggacgtgaattactgatgatcaaaagaatga-tcctgaacacctacctac 427 | |||||||||||||||| |||||||||||||| |||||| ||||||||||||||| || Sbjct: 3776 tacgcataacggacgtgagctactgatgatcaaatgaatgattcctgaacacctacccac 3717 Query: 428 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcac 487 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 3716 gtcagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcac 3657 Query: 488 ggctacgcacacagt 502 || ||| |||||||| Sbjct: 3656 ggttacccacacagt 3642
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 630 bits (318), Expect = e-177 Identities = 453/495 (91%), Gaps = 12/495 (2%) Strand = Plus / Minus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 4129 tcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaa------cgacgt 4076 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 4075 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagaagaaga 4016 Query: 133 agaag---canctccaaatgaacaatcaacgcgctcgcgtnaagtgacctttacatgtac 189 ||||| || ||||||| ||||||||||||||||||||| |||| |||||||| ||||| Sbjct: 4015 agaagaggcaactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtac 3956 Query: 190 ctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaa 249 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3955 ctgcaactggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaa 3896 Query: 250 ggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagcag 309 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 3895 ggtatcaagactagcaaagcttaatgggtaaggtatggttaagtcgtgaggttgcagcag 3836 Query: 310 cgactaagcatatatttgatggct-aacttacgagtaccagtaatcagagggggaagatc 368 || ||||||||||| ||| ||||| |||||| |||||| || ||| ||| |||||||| | Sbjct: 3835 cggctaagcatatagttggtggctaaacttatgagtacaagaaataaga-ggggaagagc 3777 Query: 369 tgcgcataacggacgtgaattactgatgatcaaaagaatga-tcctgaacacctacctac 427 | |||||||||||||||| |||||||||||||| |||||| ||||||||||||||| || Sbjct: 3776 tacgcataacggacgtgagctactgatgatcaaatgaatgattcctgaacacctacccac 3717 Query: 428 gtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcac 487 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 3716 gtcagacataaccccaccgtgtcctcgatcggagaaggaactcacgaaagagacagtcac 3657 Query: 488 ggctacgcacacagt 502 || ||| |||||||| Sbjct: 3656 ggttacccacacagt 3642
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 591 bits (298), Expect = e-165 Identities = 406/439 (92%), Gaps = 3/439 (0%) Strand = Plus / Plus Query: 123 aagaagaagaagaagcanctccaaatgaacaatcaacgcgctcgcgtnaagtgaccttta 182 ||||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||||||| Sbjct: 2747 aagaagaagaagaagcaactccaaataaacaatccacgcgctcgcgtcaagtaaccttta 2806 Query: 183 catgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctcat 242 ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct: 2807 catgtacttgcaactggtgttgtagtaatctgtgagccataggggactcagcaatctcat 2866 Query: 243 ttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgaggtt 302 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2867 ttccaaagatatcaagactagcaaagcttaatgggtgaggcatggttaagtggtgaggtt 2926 Query: 303 gcagcagcgactaagcatatatttgatggct-aacttacgagtaccagtaatcagagggg 361 ||||||||| ||||||| ||||||| ||||| ||||||||||||| || ||| ||| ||| Sbjct: 2927 gcagcagcggctaagcacatatttggtggctaaacttacgagtacaaggaataaga-ggg 2985 Query: 362 gaagatctgcgcataacggacgtgaattactgatgatcaaaagaatgatcctgaacacct 421 || ||||| ||||||||| | ||||| |||| ||||||| | |||||||||||||| ||| Sbjct: 2986 gatgatctacgcataacgta-gtgaactactaatgatcagatgaatgatcctgaacgcct 3044 Query: 422 acctacgtcagacataaccccaccgtgtcctcgatcggagaaagaactcacgaaagagac 481 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3045 acctacgttagacataaccccaccgtgtcctcgatcggagtaagaactcacgaaagagac 3104 Query: 482 aatcacggctacgcacacagtgggcatattttcattaagttaacttcaagttatctagaa 541 | |||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 3105 agtcacggttacgcacacagttggcatattttaattaagttaacttcaagttatctagaa 3164 Query: 542 ccagtgttaaacaaagctt 560 ||||||||||||||||||| Sbjct: 3165 ccagtgttaaacaaagctt 3183 Score = 178 bits (90), Expect = 1e-41 Identities = 116/125 (92%) Strand = Plus / Plus Query: 13 tcaagagtnagagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgt 72 ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 2607 tcaagggtaagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgt 2666 Query: 73 ccatccttgctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaaga 132 |||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| Sbjct: 2667 ccatccttgctatcccaggctgccggtctggaacccatcctagattgatgaagaagaaga 2726 Query: 133 agaag 137 ||||| Sbjct: 2727 agaag 2731
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 496 bits (250), Expect = e-137 Identities = 480/546 (87%), Gaps = 15/546 (2%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||| Sbjct: 2335 agagcagggtccgactacgaacgaaaacaaacgataaaa---gaacgacgtccatccttg 2279 Query: 82 ctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaa-gaagaagcan 140 |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| | Sbjct: 2278 ctatcccaggctgccgacctggaacccatcctagatcgacgaagaagaaagaagaagaaa 2219 Query: 141 ctccaaatgaacaatcaacgcgctcgcgtna-agtgacctttacatgtacctgcaactgg 199 ||||||||||||||||| |||| | ||| | | |||||||||||||||||||||| Sbjct: 2218 ctccaaatgaacaatcatcgcgtgcacgtcttaatatcctttacatgtacctgcaactga 2159 Query: 200 tgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaaga 259 |||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 2158 tgttatagtaatctgtgagccacaggggactcggcaatctcatttccaaaagtatcaaga 2099 Query: 260 ctagcaaagcttaatgggtgaggtatggttaagtggtgaggttgcagc-agcgactaagc 318 ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 2098 ctagcaaagcttaatggatgaggtatggttaagtggtgaggctgcagcaagcgactaagc 2039 Query: 319 atatatttga--tggctaacttacgagtaccagtaatcagagggggaa-gatctgcgcat 375 || |||||| |||||||||||||||||| || ||| | | ||||| ||||| ||||| Sbjct: 2038 at-catttgaggtggctaacttacgagtacaag-aataaaaacgggaatgatctacgcat 1981 Query: 376 aacggacgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgtcagaca 435 ||| ||| |||| || || |||||||| ||||||||||||| |||| | ||||||| ||| Sbjct: 1980 aacagacatgaactattggtgatcaaatgaatgatcctgaagaccttcttacgtcaaaca 1921 Query: 436 taaccccaccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacggctacgc 495 |||||||||||||||||||||||||||| || ||||||||||||||| ||| || ||||| Sbjct: 1920 taaccccaccgtgtcctcgatcggagaaggagctcacgaaagagacagtcatggttacgc 1861 Query: 496 acacagtgggcata---ttttcattaagttaacttcaagttatctagaaccag-tgttaa 551 || |||| ||||| |||| ||||||||||||||||||||||||||||| | |||||| Sbjct: 1860 actcagtttgcatatttttttaattaagttaacttcaagttatctagaaccggatgttaa 1801 Query: 552 acaaag 557 |||||| Sbjct: 1800 acaaag 1795
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 236 bits (119), Expect = 6e-59 Identities = 261/300 (87%), Gaps = 10/300 (3%) Strand = Plus / Minus Query: 266 aagcttaatgggtgaggtatggttaagtggtgaggttgcagca-gcgactaagcatatat 324 ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct: 7321 aagcttaatggatgaggtatggttaagtggtgaggctgcagcaagcgactaagcatc-at 7263 Query: 325 ttga--tggctaacttacgagtaccagtaatcagagggggaa-gatctgcgcataacgga 381 |||| |||||||||||||||||| || ||| | | ||||| ||||| |||||||| || Sbjct: 7262 ttgaggtggctaacttacgagtacaag-aataaaaacgggaatgatctacgcataacaga 7204 Query: 382 cgtgaattactgatgatcaaaagaatgatcctgaacacctacctacgtcagacataaccc 441 | |||| || || |||||||| ||||||||||||| |||| | ||||||| ||||||||| Sbjct: 7203 catgaactattggtgatcaaatgaatgatcctgaagaccttcttacgtcaaacataaccc 7144 Query: 442 caccgtgtcctcgatcggagaaagaactcacgaaagagacaatcacggctacgcacacag 501 |||||||||||||||||||||| || ||||||||||||||| ||| || ||||||| ||| Sbjct: 7143 caccgtgtcctcgatcggagaaggagctcacgaaagagacagtcatggttacgcactcag 7084 Query: 502 tgggcata---ttttcattaagttaacttcaagttatctagaaccag-tgttaaacaaag 557 | ||||| |||| ||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 7083 tttgcatatttttttaattaagttaacttcaagttatctagaaccggatgttaaacaaag 7024
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 200 bits (101), Expect = 4e-48 Identities = 153/168 (91%), Gaps = 2/168 (1%) Strand = Plus / Minus Query: 180 ttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatct 239 |||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||| Sbjct: 4078 ttacctgtacctgcaactggtgttgtaggaatctgtgagccac-ggggactcagcaatct 4020 Query: 240 catttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgag 299 ||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||| Sbjct: 4019 catttccaagggtatcaagactattaaagcttaataggcaaggtatggttaagtggtgag 3960 Query: 300 gttgcagcagcgactaagcatatatttga-tggctaacttacgagtac 346 ||||||||| ||||||||| ||||||| |||||||||||||||||| Sbjct: 3959 gttgcagcaagcactaagcatttatttgagtggctaacttacgagtac 3912 Score = 127 bits (64), Expect = 4e-26 Identities = 103/115 (89%), Gaps = 7/115 (6%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| Sbjct: 4229 agagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatccttg 4176 Query: 82 ctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaagaagaa 136 |||||||||||||||| |||||||||||||||| |||||| |||||||||||||| Sbjct: 4175 ctatcccaggctgccg-cctggaacccatcctatatcgaagaagaagaagaagaa 4122 Score = 93.7 bits (47), Expect = 6e-16 Identities = 109/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 408 gatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaaagaa 467 |||||||||||||||| ||||||| ||||||||||||||||| ||| ||||| ||| | Sbjct: 3852 gatcctgaacacctacatacgtcaaacataaccccaccgtgttctctctcgga-taagga 3794 Query: 468 ctcacga-aagagacaatcacggctacgcacacagtgggcatattttcattaagttaact 526 ||||||| |||||||| |||||| |||||||||||| || |||||| || |||| ||| Sbjct: 3793 ctcacgagaagagacagtcacggttacgcacacagttggtgtattttatttgagtttact 3734 Query: 527 tcaagtt 533 ||||||| Sbjct: 3733 tcaagtt 3727
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 170 bits (86), Expect = 3e-39 Identities = 148/165 (89%), Gaps = 3/165 (1%) Strand = Plus / Minus Query: 180 ttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatct 239 |||| ||||||| |||||| |||| | ||||| |||||||||| ||||||||| |||||| Sbjct: 4187 ttacctgtacctccaactgttgttatagtaatttgtgagccac-ggggactcaacaatct 4129 Query: 240 catttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgag 299 ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 4128 catttccaagggtatcaagactattaaagcttaatgggtgaggtacggttaagtggtgag 4069 Query: 300 gttgcagc-agcgactaagcatatatttga-tggctaacttacga 342 | |||||| ||||||||||||| ||||||| ||| |||||||||| Sbjct: 4068 gctgcagcaagcgactaagcatttatttgagtggttaacttacga 4024 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/116 (83%), Gaps = 7/116 (6%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 |||||||||||||||||||||||||| || || | ||||| ||| |||||||||| Sbjct: 4341 agagcagggtccgactacggacgaaatcaaacaataaaat------gacatccatccttg 4288 Query: 82 ctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaagaagaag 137 |||||| |||||||| |||| ||| |||||||| || || ||||||||||||||| Sbjct: 4287 ctatcctaggctgcc-gcctagaatccatcctaaattgatgaagaagaagaagaag 4233 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 ||||||||||||||||| ||||||| |||||| |||||||||| Sbjct: 3961 tgatcctgaacacctacttacgtcaaacataatcccaccgtgt 3919
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 161 bits (81), Expect = 3e-36 Identities = 146/164 (89%), Gaps = 3/164 (1%) Strand = Plus / Minus Query: 180 ttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatct 239 |||| ||||||||||||| |||||| | |||||||||||||| ||||||||| |||||| Sbjct: 3876 ttacctgtacctgcaactattgttgtaggaatctgtgagccac-ggggactcaacaatct 3818 Query: 240 catttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtgag 299 ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 3817 catttccaagggtatcaagactattaaagcttaatgggtgaggtaaggttaagtggtgag 3758 Query: 300 gttgcagcagcgactaagcatatatttga-tggctaacttacga 342 | | ||||| ||||||||| ||||||| |||||||||||||| Sbjct: 3757 gctacagcaagcactaagcat-tatttgagtggctaacttacga 3715 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/116 (86%), Gaps = 7/116 (6%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||| |||||||||||||||| |||| ||||| ||| ||||||||| Sbjct: 4030 agagcagggtctaactacggacgaaaacaaacgataaaat------gacacccatccttg 3977 Query: 82 ctatcccaggctgccggcctggaacccatcctagatcgaaaaagaagaagaagaag 137 |||||||||||||||| ||||||||||||||| |||| || ||||||||||||||| Sbjct: 3976 ctatcccaggctgccg-cctggaacccatcctggatcaaagaagaagaagaagaag 3922 Score = 87.7 bits (44), Expect = 4e-14 Identities = 112/132 (84%), Gaps = 2/132 (1%) Strand = Plus / Minus Query: 408 gatcctgaacacctacctacgtcagacataaccccaccgtgtcctcgatcggagaaagaa 467 |||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||| | Sbjct: 3651 gatcctgaacacctacttacgtcaaacataaccccaccgtgttctctcccgga-taagga 3593 Query: 468 ctcacga-aagagacaatcacggctacgcacacagtgggcatattttcattaagttaact 526 ||||||| |||||||| |||||| |||||||||||| || |||||| || |||| ||| Sbjct: 3592 ctcacgagaagagacagtcacggttacgcacacagttggtgtattttatttgagtttact 3533 Query: 527 tcaagttatcta 538 ||||||| |||| Sbjct: 3532 tcaagttttcta 3521
>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds Length = 16224 Score = 117 bits (59), Expect = 4e-23 Identities = 145/170 (85%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 178 ctttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaat 237 |||||| |||||||||| ||| |||||| ||||||||||||||| |||||| || |||| Sbjct: 11142 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccat-ggggacccaacaat 11200 Query: 238 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtg 297 |||||| |||| |||| ||| |||||||||||||||||||| || | |||||||||||| Sbjct: 11201 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 11260 Query: 298 aggttgcagc-agcgactaagcatatatttgatggctaacttacgagtac 346 ||| || || |||| |||||||| | | || |||||||||||||||||| Sbjct: 11261 aggaggctgcaagcg-ctaagcatttgtatggtggctaacttacgagtac 11309
>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds Length = 15688 Score = 117 bits (59), Expect = 4e-23 Identities = 145/170 (85%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 178 ctttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaat 237 |||||| |||||||||| ||| |||||| ||||||||||||||| |||||| || |||| Sbjct: 10606 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccat-ggggacccaacaat 10664 Query: 238 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtg 297 |||||| |||| |||| ||| |||||||||||||||||||| || | |||||||||||| Sbjct: 10665 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 10724 Query: 298 aggttgcagc-agcgactaagcatatatttgatggctaacttacgagtac 346 ||| || || |||| |||||||| | | || |||||||||||||||||| Sbjct: 10725 aggaggctgcaagcg-ctaagcatttgtatggtggctaacttacgagtac 10773
>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds Length = 16209 Score = 117 bits (59), Expect = 4e-23 Identities = 145/170 (85%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 178 ctttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaat 237 |||||| |||||||||| ||| |||||| ||||||||||||||| |||||| || |||| Sbjct: 11127 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccat-ggggacccaacaat 11185 Query: 238 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtg 297 |||||| |||| |||| ||| |||||||||||||||||||| || | |||||||||||| Sbjct: 11186 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 11245 Query: 298 aggttgcagc-agcgactaagcatatatttgatggctaacttacgagtac 346 ||| || || |||| |||||||| | | || |||||||||||||||||| Sbjct: 11246 aggaggctgcaagcg-ctaagcatttgtatggtggctaacttacgagtac 11294
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 117 bits (59), Expect = 4e-23 Identities = 145/170 (85%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 178 ctttacatgtacctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaat 237 |||||| |||||||||| ||| |||||| ||||||||||||||| |||||| || |||| Sbjct: 77678 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccat-ggggacccaacaat 77736 Query: 238 ctcatttccaaaggtatcaagactagcaaagcttaatgggtgaggtatggttaagtggtg 297 |||||| |||| |||| ||| |||||||||||||||||||| || | |||||||||||| Sbjct: 77737 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 77796 Query: 298 aggttgcagc-agcgactaagcatatatttgatggctaacttacgagtac 346 ||| || || |||| |||||||| | | || |||||||||||||||||| Sbjct: 77797 aggaggctgcaagcg-ctaagcatttgtatggtggctaacttacgagtac 77845 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 207 gtaatctgtgagccacaggggactcagcaatctc 240 ||||||||||||||||| ||||||||||||||| Sbjct: 114728 gtaatctgtgagccacaaaggactcagcaatctc 114761 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 207 gtaatctgtgagccacaggggactcagcaatctc 240 ||||||||||||||||| ||||||||||||||| Sbjct: 104861 gtaatctgtgagccacaaaggactcagcaatctc 104894
>gb|AY747599.1| Triticum aestivum cultivar IL369 line VRN-A1 (VRN-A1) gene, complete cds; and gypsy retrotransposon Sukkula, complete sequence Length = 6730 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/101 (86%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 200 tgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaaga 259 |||||| ||||||| ||||||| |||||| ||||||||||||| |||| |||| ||| | Sbjct: 2080 tgttgtagtaatctatgagccat-ggggacccagcaatctcattaccaagggtagcaaaa 2138 Query: 260 ctagcaaagcttaatgggtgaggtatggttaagtggtgagg 300 ||||||||| ||||||||| || | ||||||||||||||| Sbjct: 2139 ctagcaaagattaatgggtatggaagggttaagtggtgagg 2179
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 77.8 bits (39), Expect = 3e-11 Identities = 65/74 (87%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 77.8 bits (39), Expect = 3e-11 Identities = 65/74 (87%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 77.8 bits (39), Expect = 3e-11 Identities = 65/74 (87%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 75.8 bits (38), Expect = 1e-10 Identities = 87/101 (86%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 200 tgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaaga 259 |||||| ||||||| ||||||| |||||| ||||||||||||| |||| |||| ||| | Sbjct: 7817 tgttgtagtaatctatgagccat-ggggac-cagcaatctcattaccaagggtagcaaaa 7874 Query: 260 ctagcaaagcttaatgggtgaggtatggttaagtggtgagg 300 ||||||||| ||||||||| || | ||||||||||||||| Sbjct: 7875 ctagcaaagattaatgggtatggaagggttaagtggtgagg 7915
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 75.8 bits (38), Expect = 1e-10 Identities = 87/101 (86%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 200 tgttgtngtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaaga 259 |||||| ||||||| ||||||| |||||| ||||||||||||| |||| |||| ||| | Sbjct: 7586 tgttgtagtaatctatgagccat-ggggac-cagcaatctcattaccaagggtagcaaaa 7643 Query: 260 ctagcaaagcttaatgggtgaggtatggttaagtggtgagg 300 ||||||||| ||||||||| || | ||||||||||||||| Sbjct: 7644 ctagcaaagattaatgggtatggaagggttaagtggtgagg 7684
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 69.9 bits (35), Expect = 9e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 |||||||||||||||||| |||||||||| |||| || |||||| |||||||||| Sbjct: 68 agagcagggtccgactacagacgaaaacaaacgataa------aacgacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 69.9 bits (35), Expect = 9e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaacaaatgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 69.9 bits (35), Expect = 9e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaacaaatgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 110919 tgatcctgaacacctacctacgtcattcataaccccaccgtgt 110961 Score = 69.9 bits (35), Expect = 9e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 407 tgatcctgaacacctacctacgtcagacataaccccaccgtgt 449 ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 71204 tgatcctgaacacctacctacgtcattcataaccccaccgtgt 71246
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 61.9 bits (31), Expect = 2e-06 Identities = 63/74 (85%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||| ||||||||||||||| |||| || ||| || |||||||||| Sbjct: 68 agagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 61.9 bits (31), Expect = 2e-06 Identities = 63/74 (85%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||| ||||||||||||||| |||| || ||| || |||||||||| Sbjct: 68 agagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 61.9 bits (31), Expect = 2e-06 Identities = 63/74 (85%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||| ||||||||||||||| |||| || ||| || |||||||||| Sbjct: 68 agagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 61.9 bits (31), Expect = 2e-06 Identities = 63/74 (85%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 |||||||||||| ||||||||||||||| |||| ||||| ||| |||||||||| Sbjct: 68 agagcagggtccatctacggacgaaaacaaacgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 61.9 bits (31), Expect = 2e-06 Identities = 63/74 (85%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 22 agagcagggtccgactacggacgaaaacagacgagaaaataagaacgacgtccatccttg 81 ||||||||||||||||||||||||||| | | || ||||| ||| |||||||||| Sbjct: 68 agagcagggtccgactacggacgaaaaaaaatgataaaat------gacatccatccttg 15 Query: 82 ctatcccaggctgc 95 |||||||||||||| Sbjct: 14 ctatcccaggctgc 1
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctc 240 |||||| ||||||| | ||||||||||||||||| |||||||||||||||| Sbjct: 3191 cctgcatctggtgtaatagtaatctgtgagccaca-gggactcagcaatctc 3241 Score = 48.1 bits (24), Expect = 0.031 Identities = 31/32 (96%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 210 atctgtgagccacaggggactcagcaatctca 241 |||||||||||||| ||||||||||||||||| Sbjct: 284408 atctgtgagccaca-gggactcagcaatctca 284378 Score = 48.1 bits (24), Expect = 0.031 Identities = 31/32 (96%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 210 atctgtgagccacaggggactcagcaatctca 241 |||||||||||||| ||||||||||||||||| Sbjct: 274894 atctgtgagccaca-gggactcagcaatctca 274864
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 65 aacgacgtccatccttgctatcccaggctgc 95 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 52.0 bits (26), Expect = 0.002 Identities = 33/34 (97%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 207 gtaatctgtgagccacaggggactcagcaatctc 240 ||||||||||||||||| |||||||||||||||| Sbjct: 109941 gtaatctgtgagccaca-gggactcagcaatctc 109909 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctc 240 |||||| ||||||| | ||||||||||||||||| ||||||||||||||| Sbjct: 48065 cctgcatctggtgtaatagtaatctgtgagccaca-aggactcagcaatctc 48015 Score = 46.1 bits (23), Expect = 0.12 Identities = 30/31 (96%), Gaps = 1/31 (3%) Strand = Plus / Plus Query: 210 atctgtgagccacaggggactcagcaatctc 240 |||||||||||||| |||||||||||||||| Sbjct: 151359 atctgtgagccaca-gggactcagcaatctc 151388 Score = 44.1 bits (22), Expect = 0.49 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 207 gtaatctgtgagccacaggggactcagcaatctc 240 ||||||||||||||||| ||||||||||||||| Sbjct: 66541 gtaatctgtgagccaca-aggactcagcaatctc 66509
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctc 240 |||||| ||||||| | ||||||||||||||||| ||||||||||||||| Sbjct: 125779 cctgcatctggtgtaatagtaatctgtgagccaca-aggactcagcaatctc 125829 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctc 240 |||||| ||||||| | ||||||||||||||||| ||||||||||||||| Sbjct: 104680 cctgcatctggtgtaatagtaatctgtgagccaca-aggactcagcaatctc 104730
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 189 cctgcaactggtgttgtngtaatctgtgagccacaggggactcagcaatctc 240 |||||| ||||||| | ||||||||||| ||||| |||||||||||||||| Sbjct: 125358 cctgcatctggtgtaatagtaatctgtgaaccaca-gggactcagcaatctc 125408
>gb|AF175285.1|AF175285 Secale cereale clone F17 hypervariable DNA sequence Length = 477 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 212 ctgtgagccacaggggactcagcaatctc 240 ||||||||||||| ||||||||||||||| Sbjct: 438 ctgtgagccacagaggactcagcaatctc 466
>ref|XM_478965.1| Oryza sativa (japonica cultivar-group), mRNA Length = 687 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||||||||||||||||||| Sbjct: 679 agatcgaaaaagaagaagaagaag 656
>ref|XM_876112.1| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 6 (LOC510240), mRNA Length = 2330 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1259 gaaaaagaagaagaagaagcaactcca 1285
>ref|XM_876040.1| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 5 (LOC510240), mRNA Length = 2440 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1369 gaaaaagaagaagaagaagcaactcca 1395
>ref|XM_875973.1| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 4 (LOC510240), mRNA Length = 2324 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1253 gaaaaagaagaagaagaagcaactcca 1279
>ref|XM_587363.2| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 1 (LOC510240), mRNA Length = 2176 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1105 gaaaaagaagaagaagaagcaactcca 1131
>ref|XM_865355.1| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 2 (LOC510240), mRNA Length = 2348 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1259 gaaaaagaagaagaagaagcaactcca 1285
>ref|XM_875760.1| PREDICTED: Bos taurus similar to Protein KIAA0179, transcript variant 3 (LOC510240), mRNA Length = 2256 Score = 48.1 bits (24), Expect = 0.031 Identities = 26/27 (96%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagcanctcca 145 ||||||||||||||||||||| ||||| Sbjct: 1185 gaaaaagaagaagaagaagcaactcca 1211
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||||||||||||||||||| Sbjct: 24048383 agatcgaaaaagaagaagaagaag 24048360 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 21710208 aaaaagaagaagaagaagca 21710227 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 8521635 aaaaagaagaagaagaagca 8521654 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 7742617 aaaaagaagaagaagaagca 7742636 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 2898805 aaaaagaagaagaagaagca 2898824
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1174_G05 Length = 111202 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||||||||||||||||||| Sbjct: 89991 agatcgaaaaagaagaagaagaag 89968
>gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repetitive DNA sequence Length = 3244 Score = 46.1 bits (23), Expect = 0.12 Identities = 30/31 (96%), Gaps = 1/31 (3%) Strand = Plus / Minus Query: 210 atctgtgagccacaggggactcagcaatctc 240 ||||||||||||| ||||||||||||||||| Sbjct: 2257 atctgtgagccac-ggggactcagcaatctc 2228
>ref|NM_106735.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G80870 mRNA, complete cds Length = 2251 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 agatcgaaaaagaagaagaagaagca 139 ||||||||||| |||||||||||||| Sbjct: 1303 agatcgaaaaacaagaagaagaagca 1328
>emb|Z29117.1|CEC48B4 Caenorhabditis elegans Cosmid C48B4, complete sequence Length = 41151 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaagca 139 |||||||||||||||||||||| Sbjct: 10488 cgaaaaagaagaagaagaagca 10467
>gb|DQ108538.1| Corchorus olitorius SSR marker J139-M13F genomic sequence Length = 860 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaagca 139 |||||||||||||||||||||| Sbjct: 272 cgaaaaagaagaagaagaagca 293
>dbj|AB025634.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSD21 Length = 59793 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaagca 139 |||||||||||||||||||||| Sbjct: 26949 cgaaaaagaagaagaagaagca 26928
>gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence Length = 109694 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 agatcgaaaaagaagaagaagaagca 139 ||||||||||| |||||||||||||| Sbjct: 77418 agatcgaaaaacaagaagaagaagca 77443
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 tccttgctatcccaggctgcc 96 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 617020 gaaaaagaagaagaagaagca 617040
>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence Length = 242587 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 94897 tcgaaaaagaagaagaagaag 94877
>gb|BC049231.1| Mus musculus RIKEN cDNA 2810055E05 gene, mRNA (cDNA clone MGC:54941 IMAGE:4161178), complete cds Length = 1403 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 783 gaaaaagaagaagaagaagca 803
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 142103 gaaaaagaagaagaagaagca 142123
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 1709 gaaaaagaagaagaagaagca 1689
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 96066 gaaaaagaagaagaagaagca 96046
>ref|XM_707456.1| Candida albicans SC5314 putative mitochondrial ribosomal protein Rsm23p (CaO19.10984), mRNA Length = 1452 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 71 gaaaaagaagaagaagaagca 51
>ref|XM_707426.1| Candida albicans SC5314 putative mitochondrial ribosomal protein Rsm23p (CaO19.3480), mRNA Length = 1452 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 71 gaaaaagaagaagaagaagca 51
>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence Length = 117818 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 39382 gaaaaagaagaagaagaagca 39402
>gb|BC116590.1| Danio rerio cDNA clone IMAGE:7263037 Length = 1344 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 563 gaaaaagaagaagaagaagca 583
>gb|AC140187.3| Mus musculus BAC clone RP24-364N20 from chromosome Y, complete sequence Length = 151358 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 42909 gaaaaagaagaagaagaagca 42929
>gb|AC161055.2| Mus musculus BAC clone RP23-287L7 from chromosome 12, complete sequence Length = 189803 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 36438 tcgaaaaagaagaagaagaag 36458
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 12290177 gaaaaagaagaagaagaagca 12290197 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 34349901 gaaaaagaagaagaagaagc 34349882 Score = 40.1 bits (20), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 122 aaagaagaagaagaagcanctccaaat 148 |||||||||||||||| | |||||||| Sbjct: 12956682 aaagaagaagaagaagaaactccaaat 12956656 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 10635593 cgaaaaagaagaagaagaag 10635574
>gb|AC142267.3| Mus musculus BAC clone RP24-131K10 from chromosome Y, complete sequence Length = 151710 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 104701 gaaaaagaagaagaagaagca 104721
>gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosome 13, complete sequence Length = 143813 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 85947 tcgaaaaagaagaagaagaag 85927
>gb|AC002132.1| Human DNA from chromosome 19 cosmid F24108 containing MAG, complete sequence Length = 39336 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 24288 gaaaaagaagaagaagaagca 24308
>gb|U41992.1| Caenorhabditis elegans cosmid F32E10, complete sequence Length = 33318 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 27207 gaaaaagaagaagaagaagca 27227
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 ctagatcgaaaaagaagaagaagaa 136 |||||||||| |||||||||||||| Sbjct: 70978 ctagatcgaagaagaagaagaagaa 71002
>emb|AL592076.4| Human DNA sequence from clone RP11-306K13 on chromosome 1 Contains a ribosomal protein L36 (RPL36) pseudogene, complete sequence Length = 100592 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 85397 gaaaaagaagaagaagaagca 85377
>emb|AL513204.10| Human DNA sequence from clone RP11-418B8 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 111173 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gactcagcaatctcatttcca 247 ||||||||||||||||||||| Sbjct: 109921 gactcagcaatctcatttcca 109901
>emb|AL512284.20| Human DNA sequence from clone RP11-248M22 on chromosome 10 Contains part of the gene for CamKI-like protein kinase (CKLiK) (LOC221042 LOC283070) and two CpG islands, complete sequence Length = 113920 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 23638 gaaaaagaagaagaagaagca 23618
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 196000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gactcagcaatctcatttcca 247 ||||||||||||||||||||| Sbjct: 35644 gactcagcaatctcatttcca 35624
>ref|XM_787500.1| PREDICTED: Strongylocentrotus purpuratus similar to Tetratricopeptide repeat protein 6 (TPR repeat protein 6) (LOC587791), mRNA Length = 3618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 243 gaaaaagaagaagaagaagca 263
>emb|Z13010.1|CTCYP52A6 C.tropicalis CYP52A6 gene encoding cytochrome P450alk3 Length = 2501 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 513 gaaaaagaagaagaagaagca 493
>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence Length = 188661 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 2552 tcgaaaaagaagaagaagaag 2572
>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence Length = 119535 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 41624 tcgaaaaagaagaagaagaag 41604
>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17, complete sequence Length = 133279 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 atcgaaaaagaagaagaagaa 136 ||||||||||||||||||||| Sbjct: 40110 atcgaaaaagaagaagaagaa 40130
>emb|AL355933.1|NCB8B20 Neurospora crassa DNA linkage group II BAC clone B8B20 Length = 86476 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 51043 gaaaaagaagaagaagaagca 51063
>emb|AJ272345.1|MMU272345 Mus musculus mRNA for PS1D protein Length = 1385 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 763 gaaaaagaagaagaagaagca 783
>emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 in linkage group 17, complete sequence Length = 165743 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 17922 gaaaaagaagaagaagaagca 17902
>emb|AL627132.4| Zebrafish DNA sequence from clone RP71-1H3 in linkage group 13 Contains part of a putative novel gene, a novel LINE element similar to X. laevis TX1 and two CpG islands, complete sequence Length = 146039 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 43149 gaaaaagaagaagaagaagca 43169
>gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosome y, complete sequence Length = 166980 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 117107 gaaaaagaagaagaagaagca 117087
>gb|AC116968.2| Homo sapiens chromosome 19 clone LLNLR-256H5, complete sequence Length = 17042 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 3858 gaaaaagaagaagaagaagca 3838
>ref|NM_153160.2| Mus musculus zinc finger, CCHC domain containing 17 (Zcchc17), mRNA Length = 1631 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 816 gaaaaagaagaagaagaagca 836
>gb|DQ137271.1| Uroleptus sp. WJC-2003 unknown scrambled protein 1 (USG1) gene, major locus; micronuclear Length = 9553 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 cctagatcgaaaaagaagaag 131 ||||||||||||||||||||| Sbjct: 5580 cctagatcgaaaaagaagaag 5600
>gb|DQ137270.1| Uroleptus sp. WJC-2003 unknown scrambled protein 1 (USG1) gene, USG1-2 allele, complete sequence; macronuclear Length = 3884 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 cctagatcgaaaaagaagaag 131 ||||||||||||||||||||| Sbjct: 3064 cctagatcgaaaaagaagaag 3084
>gb|DQ137269.1| Uroleptus sp. WJC-2003 unknown scrambled protein 1 (USG1) gene, USG1-1 allele, complete sequence; macronuclear Length = 3980 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 cctagatcgaaaaagaagaag 131 ||||||||||||||||||||| Sbjct: 3084 cctagatcgaaaaagaagaag 3104
>gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211124 Score = 42.1 bits (21), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 aagaagaagaagaagcanctccaa 146 ||||||||||||||||| |||||| Sbjct: 57840 aagaagaagaagaagcagctccaa 57817
>gb|AC110785.2| Homo sapiens BAC clone RP11-455I7 from 4, complete sequence Length = 100987 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 66202 gaaaaagaagaagaagaagca 66182
>gb|AC121318.17| Mus musculus chromosome 1, clone RP24-377P1, complete sequence Length = 179884 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 4442 tcgaaaaagaagaagaagaag 4422
>dbj|AK152289.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830058K17 product:PS1D protein (Similar to hypothetical protein) (Putative S1 RNA binding domain protein) (LDC4), full insert sequence Length = 1412 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 808 gaaaaagaagaagaagaagca 828
>dbj|AK168912.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920064O13 product:PS1D protein (Similar to hypothetical protein) (Putative S1 RNA binding domain protein) (LDC4), full insert sequence Length = 2114 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 808 gaaaaagaagaagaagaagca 828
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 tccttgctatcccaggctgcc 96 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 19520 gaaaaagaagaagaagaagca 19500
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 33395745 tcgaaaaagaagaagaagaag 33395725 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 atcgaaaaagaagaagaagaa 136 ||||||||||||||||||||| Sbjct: 31218509 atcgaaaaagaagaagaagaa 31218529
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 22506659 gaaaaagaagaagaagaagca 22506639
>gb|AY253297.1| Mus musculus LDC4 mRNA, complete cds Length = 1631 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 816 gaaaaagaagaagaagaagca 836
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 12286940 gaaaaagaagaagaagaagca 12286960 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 34440373 gaaaaagaagaagaagaagc 34440354 Score = 40.1 bits (20), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 122 aaagaagaagaagaagcanctccaaat 148 |||||||||||||||| | |||||||| Sbjct: 12953457 aaagaagaagaagaagaaactccaaat 12953431 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 10633694 cgaaaaagaagaagaagaag 10633675
>emb|BX817753.1|CNS0ACEX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL3ZC12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 800 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 47 tcgaaaaagaagaagaagaag 67
>gb|AC084575.1|CBRG39N14 Caenorhabditis briggsae cosmid G39N14, complete sequence Length = 45027 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 36306 tcgaaaaagaagaagaagaag 36286
>gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Systems Mouse BAC Library) complete sequence Length = 157665 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 136510 gaaaaagaagaagaagaagca 136490
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 59710 gaaaaagaagaagaagaagca 59730
>gb|AC157908.5| Mus musculus chromosome 18, clone RP24-286P2, complete sequence Length = 161561 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 38783 tcgaaaaagaagaagaagaag 38803
>dbj|AK073228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023N08, full insert sequence Length = 1221 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 394 gaaaaagaagaagaagaagca 414
>emb|AL591542.20| Mouse DNA sequence from clone RP23-321M14 on chromosome 2, complete sequence Length = 197190 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 116751 tcgaaaaagaagaagaagaag 116771 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 103913 aaaaagaagaagaagaagca 103932
>emb|AL772216.15| Mouse DNA sequence from clone RP23-153M22 on chromosome 2, complete sequence Length = 212233 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 33752 gaaaaagaagaagaagaagca 33732
>emb|CT033787.9| Mouse DNA sequence from clone RP24-86C3 on chromosome 12, complete sequence Length = 194345 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 112165 tcgaaaaagaagaagaagaag 112185
>gb|BC018382.1| Mus musculus RIKEN cDNA 2810055E05 gene, mRNA (cDNA clone MGC:25446 IMAGE:4215774), complete cds Length = 1376 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 745 gaaaaagaagaagaagaagca 765
>gb|AC133194.3| Mus musculus BAC clone RP23-403H14 from 3, complete sequence Length = 205323 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcgaaaaagaagaagaagaag 137 ||||||||||||||||||||| Sbjct: 12618 tcgaaaaagaagaagaagaag 12638
>emb|AL772297.10| Mouse DNA sequence from clone RP23-462N15 on chromosome 4, complete sequence Length = 55367 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagca 139 ||||||||||||||||||||| Sbjct: 44839 gaaaaagaagaagaagaagca 44819
>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence Length = 162962 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 143880 aaaaagaagaagaagaagca 143861
>ref|NM_001036750.1| Arabidopsis thaliana GTP binding AT5G03520 transcript variant AT5G03520.2 mRNA, complete cds Length = 1135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 125 aaaaagaagaagaagaagca 144
>ref|NM_120432.2| Arabidopsis thaliana GTP binding AT5G03520 transcript variant AT5G03520.1 mRNA, complete cds Length = 1147 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 141 aaaaagaagaagaagaagca 160
>ref|NM_105903.2| Arabidopsis thaliana unknown protein AT1G72440 mRNA, complete cds Length = 3331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 2625 gaaaaagaagaagaagaagc 2644
>ref|NM_102912.3| Arabidopsis thaliana unknown protein AT1G31780 mRNA, complete cds Length = 2293 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||| ||||||||||||||| Sbjct: 38 agatcgaagaagaagaagaagaag 61
>ref|NM_147833.1| Arabidopsis thaliana unknown protein AT5G02502 mRNA, complete cds Length = 521 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaa 133 |||||||||||||||||||| Sbjct: 29 agatcgaaaaagaagaagaa 10
>ref|NM_113313.2| Arabidopsis thaliana unknown protein AT3G24080 mRNA, complete cds Length = 2163 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 370 cgaaaaagaagaagaagaag 389
>gb|AC110035.8| Mus musculus chromosome 1, clone RP23-237M24, complete sequence Length = 172559 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 103948 aaaaagaagaagaagaagca 103929
>gb|AC006603.1| Caenorhabditis elegans cosmid B0524, complete sequence Length = 41084 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 40531 cgaaaaagaagaagaagaag 40512 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 40385 cgaaaaagaagaagaagaag 40366
>gb|AC114554.8| Mus musculus chromosome 5, clone RP23-414E14, complete sequence Length = 204467 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 159659 aaaaagaagaagaagaagca 159678
>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence Length = 173802 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 33717 gaaaaagaagaagaagaagc 33698
>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence Length = 188504 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 57211 aaaaagaagaagaagaagca 57230
>ref|XM_514592.1| PREDICTED: Pan troglodytes eukaryotic translation initiation factor 2 beta (LOC458188), mRNA Length = 1127 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 162 gaaaaagaagaagaagaagc 181
>gb|AC166369.5| Mus musculus BAC clone RP23-45A11 from chromosome 14, complete sequence Length = 226970 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 6714 aaaaagaagaagaagaagca 6695
>gb|AC139675.11| Mus musculus chromosome 3, clone RP23-328D16, complete sequence Length = 204280 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 agatcgaaaaagaagaagaagaag 137 |||| ||||||||||||||||||| Sbjct: 187412 agatagaaaaagaagaagaagaag 187435
>gb|U31079.1| Danio rerio 47 kDa heat shock protein (hsp) mRNA, complete cds Length = 2006 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 18 cgaaaaagaagaagaagaag 37
>ref|XM_478644.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1988 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 1761 aaaaagaagaagaagaagca 1780
>gb|BC107588.1| Homo sapiens cDNA clone IMAGE:6727027, partial cds Length = 370 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 153 gaaaaagaagaagaagaagc 172
>ref|NM_170764.1| Danio rerio transcription factor 1 (tcf1), mRNA Length = 2979 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||| ||||||||||||||||||| Sbjct: 2618 agattgaaaaagaagaagaagaag 2595
>gb|AY559322.1| Xenopus laevis eukaryote initiation factor 2 beta mRNA, complete cds Length = 1397 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 100 gaaaaagaagaagaagaagc 119
>gb|BT020990.1| Bos taurus eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2), mRNA, complete cds Length = 1420 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 169 gaaaaagaagaagaagaagc 188
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14, complete sequence Length = 124915 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 101218 aaaaagaagaagaagaagca 101237
>gb|AC120534.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0084A20, complete sequence Length = 139391 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 63706 aaaaagaagaagaagaagca 63687
>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence Length = 122682 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 7437 cgaaaaagaagaagaagaag 7456
>gb|AC122774.11| Mus musculus chromosome 15, clone RP24-189C9, complete sequence Length = 154384 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 129670 aaaaagaagaagaagaagca 129689
>gb|AC166989.4| Mus musculus BAC clone RP24-345J5 from chromosome 16, complete sequence Length = 232228 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 agatcgaaaaagaagaagaagaag 137 |||| ||||||||||||||||||| Sbjct: 74766 agatagaaaaagaagaagaagaag 74789
>gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosome 3, complete sequence Length = 198738 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 193810 aaaaagaagaagaagaagca 193791
>gb|BC106384.1| Xenopus laevis cDNA clone MGC:130959 IMAGE:7974533, complete cds Length = 1505 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 176 gaaaaagaagaagaagaagc 195
>gb|BC106256.1| Xenopus laevis cDNA clone MGC:130708 IMAGE:7979589, complete cds Length = 1473 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 162 gaaaaagaagaagaagaagc 181
>gb|U41544.3| Caenorhabditis elegans cosmid M03A8, complete sequence Length = 22363 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 14739 cgaaaaagaagaagaagaag 14758
>gb|AC130481.11| Mus musculus chromosome 1, clone RP24-125E22, complete sequence Length = 159436 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 154088 aaaaagaagaagaagaagca 154107
>gb|BC080271.1| Mus musculus solute carrier family 4 (anion exchanger), member 3, mRNA (cDNA clone MGC:90734 IMAGE:6831942), complete cds Length = 4092 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 1129 gaaaaagaagaagaagaagc 1148
>gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's Hospital Oakland Research Institute) complete sequence Length = 216648 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 92009 gaaaaagaagaagaagaagc 91990
>gb|AF244934.1| Danio rerio hepatocyte nuclear factor 1-alpha (hnf1a) mRNA, complete cds Length = 2979 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||| ||||||||||||||||||| Sbjct: 2618 agattgaaaaagaagaagaagaag 2595
>gb|AC150544.3| Bos taurus BAC CH240-75C8 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 190186 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 90606 aaaaagaagaagaagaagca 90587
>gb|AC091452.2| Mus musculus chromosome X clone RP23-124C16, complete sequence Length = 137750 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 60211 aaaaagaagaagaagaagca 60192
>gb|AC136922.8| Mus musculus chromosome 1, clone RP23-81L22, complete sequence Length = 225579 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 1734 aaaaagaagaagaagaagca 1715
>ref|XM_362078.1| Magnaporthe grisea 70-15 hypothetical protein (MG04523.4) partial cds Length = 2328 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 458 cgaaaaagaagaagaagaag 477
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 143357 aaaaagaagaagaagaagca 143338
>gb|AC132278.3| Mus musculus BAC clone RP24-346C20 from chromosome 8, complete sequence Length = 154524 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 109078 gaaaaagaagaagaagaagc 109097
>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence Length = 188453 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 32039 aaaaagaagaagaagaagca 32020
>gb|BC000461.2| Homo sapiens eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa, mRNA (cDNA clone MGC:8508 IMAGE:2822324), complete cds Length = 1264 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 181 gaaaaagaagaagaagaagc 200
>gb|BC003848.1| Mus musculus eukaryotic translation initiation factor 2, subunit 2 (beta), mRNA (cDNA clone MGC:6425 IMAGE:3594058), complete cds Length = 2327 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 123 gaaaaagaagaagaagaagc 142
>gb|BC000934.2| Homo sapiens eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa, mRNA (cDNA clone MGC:5085 IMAGE:3447202), complete cds Length = 1417 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 156 gaaaaagaagaagaagaagc 175
>ref|XM_956972.1| Neurospora crassa OR74A hypothetical protein (NCU05294.1) partial mRNA Length = 2922 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 2727 cgaaaaagaagaagaagaag 2708
>ref|XM_959358.1| Neurospora crassa OR74A hypothetical protein (NCU02795.1) partial mRNA Length = 5277 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 2861 cgaaaaagaagaagaagaag 2880
>ref|XM_324650.1| Neurospora crassa OR74A hypothetical protein (NCU05294.1) partial mRNA Length = 2922 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 2727 cgaaaaagaagaagaagaag 2708
>ref|XM_329982.1| Neurospora crassa OR74A hypothetical protein (NCU02795.1) partial mRNA Length = 5277 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 2861 cgaaaaagaagaagaagaag 2880
>gb|AC126437.3| Mus musculus BAC clone RP24-211B22 from chromosome 14, complete sequence Length = 167869 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 151826 cgaaaaagaagaagaagaag 151807
>gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosome 8, complete sequence Length = 204342 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 70527 aaaaagaagaagaagaagca 70508
>gb|AC134831.3| Mus musculus BAC clone RP24-500P4 from chromosome 18, complete sequence Length = 188380 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 62971 aaaaagaagaagaagaagca 62952
>gb|AC102135.12| Mus musculus chromosome 18, clone RP23-253J5, complete sequence Length = 204286 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 152615 aaaaagaagaagaagaagca 152634
>gb|AF486581.1| Uncultured bacterium aminoglycoside 3'-N-acetyltransferase gene, complete cds Length = 38269 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 cccaccgtgtcctcgatcgg 459 |||||||||||||||||||| Sbjct: 30100 cccaccgtgtcctcgatcgg 30081
>gb|AC157583.9| Mus musculus chromosome 15, clone RP24-367L4, complete sequence Length = 185401 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 147150 aaaaagaagaagaagaagca 147131
>gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, complete sequence Length = 238123 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 agaaccagtgttaaacaaag 557 |||||||||||||||||||| Sbjct: 121771 agaaccagtgttaaacaaag 121790
>ref|XM_850320.1| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta) (LOC612587), mRNA Length = 1430 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 164 gaaaaagaagaagaagaagc 183
>gb|AC183107.3| Pan troglodytes BAC clone CH251-566P2 from chromosome 16, complete sequence Length = 194054 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gagccacaggggactcagca 235 |||||||||||||||||||| Sbjct: 100994 gagccacaggggactcagca 101013
>gb|AC112260.6| Mus musculus BAC clone RP23-185L5 from chromosome 18, complete sequence Length = 216325 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 148882 aaaaagaagaagaagaagca 148901
>gb|AC131679.2| Mus musculus BAC clone RP23-339I6 from chromosome 5, complete sequence Length = 198890 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 42332 aaaaagaagaagaagaagca 42313
>gb|AC006322.2| Homo sapiens PAC clone RP5-1060B11 from 7, complete sequence Length = 179640 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 136840 aaaaagaagaagaagaagca 136859
>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence Length = 89097 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 49028 aaaaagaagaagaagaagca 49047
>ref|XM_744592.1| Aspergillus fumigatus Af293 exonuclease (Afu2g05560) partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 900 gaaaaagaagaagaagaagc 919
>ref|XM_858344.1| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta), transcript variant 7 (LOC477197), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 262 gaaaaagaagaagaagaagc 281
>ref|XM_858323.1| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta), transcript variant 6 (LOC477197), mRNA Length = 1462 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 199 gaaaaagaagaagaagaagc 218
>ref|XM_858304.1| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta), transcript variant 5 (LOC477197), mRNA Length = 1355 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 199 gaaaaagaagaagaagaagc 218
>ref|XM_858255.1| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta), transcript variant 3 (LOC477197), mRNA Length = 622 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 199 gaaaaagaagaagaagaagc 218
>ref|XM_534387.2| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta), transcript variant 1 (LOC477197), mRNA Length = 1522 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 262 gaaaaagaagaagaagaagc 281
>gb|DQ483705.1| Gymnogyps californianus clone 128F microsatellite sequence Length = 437 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 100 cgaaaaagaagaagaagaag 119
>ref|XM_853137.1| PREDICTED: Canis familiaris similar to MKI67 FHA domain interacting nucleolar phosphoprotein (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34), transcript variant 2 (LOC476111), mRNA Length = 1448 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 608 cgaaaaagaagaagaagaag 627
>ref|XM_533319.2| PREDICTED: Canis familiaris similar to MKI67 FHA domain interacting nucleolar phosphoprotein (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34), transcript variant 1 (LOC476111), mRNA Length = 1523 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 683 cgaaaaagaagaagaagaag 702
>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence Length = 76169 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 11333 cgaaaaagaagaagaagaag 11314
>emb|Z92780.1|CEC45G3 Caenorhabditis elegans Cosmid C45G3, complete sequence Length = 36134 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 1776 aaaaagaagaagaagaagca 1795
>emb|CT009692.6| Mouse DNA sequence from clone RP23-262K19 on chromosome 11, complete sequence Length = 66864 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gaaaacagacgagaaaataa 63 |||||||||||||||||||| Sbjct: 42571 gaaaacagacgagaaaataa 42552
>ref|XM_747004.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g07290) partial mRNA Length = 1191 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 764 cgaaaaagaagaagaagaag 783
>emb|Z82076.1|CEW07G1 Caenorhabditis elegans Cosmid W07G1, complete sequence Length = 36480 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 6097 gaaaaagaagaagaagaagc 6078
>gb|AC127561.4| Mus musculus BAC clone RP24-273G7 from chromosome 5, complete sequence Length = 202290 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||| ||||||||||||||| Sbjct: 131677 agatcgaagaagaagaagaagaag 131654
>gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosome 14, complete sequence Length = 185581 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 36825 aaaaagaagaagaagaagca 36844
>ref|XM_849839.1| PREDICTED: Canis familiaris similar to forkhead box E1 (thyroid transcription factor 2) (LOC612113), mRNA Length = 1149 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 259 aaaaagaagaagaagaagca 278
>gb|AC122902.4| Mus musculus BAC clone RP23-40O6 from chromosome 3, complete sequence Length = 186144 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 125014 aaaaagaagaagaagaagca 125033
>gb|AC133646.4| Mus musculus BAC clone RP23-254F11 from chromosome 18, complete sequence Length = 209764 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 5516 aaaaagaagaagaagaagca 5497
>gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosome 3, complete sequence Length = 195957 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 83037 aaaaagaagaagaagaagca 83018
>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51315 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 32875 aaaaagaagaagaagaagca 32856
>emb|Z70266.1|CEC40C9 Caenorhabditis elegans Cosmid C40C9, complete sequence Length = 26208 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 482 cgaaaaagaagaagaagaag 501
>gb|AC132277.3| Mus musculus BAC clone RP24-344C7 from chromosome 9, complete sequence Length = 175852 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 104965 cgaaaaagaagaagaagaag 104946
>emb|Z68011.1|CET21B6 Caenorhabditis elegans Cosmid T21B6, complete sequence Length = 30716 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 30335 gaaaaagaagaagaagaagc 30354
>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence Length = 143266 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 118909 aaaaagaagaagaagaagca 118928
>ref|XM_805012.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506621.70) partial mRNA Length = 8518 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||||||||||||||||| ||||| Sbjct: 6110 agatcgaaaaagaagaaggagaag 6087
>emb|CT009526.6| Pig DNA sequence from clone CH242-219E11 on chromosome 17, complete sequence Length = 100904 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 72557 aaaaagaagaagaagaagca 72576
>gb|AC124184.3| Mus musculus BAC clone RP23-227N23 from 10, complete sequence Length = 182135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 101196 aaaaagaagaagaagaagca 101177
>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence Length = 257003 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 62734 aaaaagaagaagaagaagca 62753
>gb|AC122212.2| Mus musculus BAC clone RP23-99K17 from 10, complete sequence Length = 198928 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 124859 aaaaagaagaagaagaagca 124840
>gb|AC129180.3| Mus musculus BAC clone RP23-304I16 from 18, complete sequence Length = 170737 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 18735 gaaaaagaagaagaagaagc 18754
>gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete sequence Length = 188791 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 103134 aaaaagaagaagaagaagca 103153
>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete sequence Length = 197576 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 45724 aaaaagaagaagaagaagca 45743
>gb|AC110380.4| Mus musculus BAC clone RP24-194P24 from 14, complete sequence Length = 177581 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 172778 cgaaaaagaagaagaagaag 172797
>gb|AC121886.2| Mus musculus BAC clone RP24-141K3 from 18, complete sequence Length = 140819 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 110330 aaaaagaagaagaagaagca 110311
>gb|AC098720.2| Mus musculus BAC clone RP23-2N16 from 5, complete sequence Length = 214995 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 151380 aaaaagaagaagaagaagca 151399
>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence Length = 230585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 177060 aaaaagaagaagaagaagca 177041
>gb|AC113969.7| Mus musculus chromosome 8, clone RP23-122L19, complete sequence Length = 182258 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 97334 gaaaaagaagaagaagaagc 97353
>gb|AY223338.1| Schistosoma japonicum clone ZZD836 mRNA sequence Length = 1176 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 923 aaaaagaagaagaagaagca 904
>gb|AC007276.3| Homo sapiens BAC clone RP11-226O1 from 7, complete sequence Length = 172573 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 84784 aaaaagaagaagaagaagca 84803
>emb|CR681244.2|CNS0FOLK Tetraodon nigroviridis full-length cDNA Length = 1746 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 13 gaaaaagaagaagaagaagc 32
>gb|AC116468.13| Mus musculus chromosome 16, clone RP23-166G21, complete sequence Length = 193206 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 57147 aaaaagaagaagaagaagca 57128
>gb|AC163214.4| Mus musculus chromosome 5, clone RP23-467O1, complete sequence Length = 200882 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 170709 cgaaaaagaagaagaagaag 170728
>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence Length = 190724 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 45760 aaaaagaagaagaagaagca 45779
>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence Length = 116685 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 90742 gaaaaagaagaagaagaagc 90723
>emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 in linkage group 8, complete sequence Length = 130762 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agatcgaaaaagaagaagaagaag 137 |||| ||||||||||||||||||| Sbjct: 2301 agattgaaaaagaagaagaagaag 2278
>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence Length = 121144 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 2087 aaaaagaagaagaagaagca 2068
>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence Length = 197652 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 101601 aaaaagaagaagaagaagca 101582
>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence Length = 142154 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 2089 aaaaagaagaagaagaagca 2070
>gb|DQ139863.1| Oncorhynchus mykiss putative BRD2 mRNA, complete cds Length = 1937 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 713 gaaaaagaagaagaagaagc 732
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgaaaaagaagaagaagaag 137 |||||||||||||||||||| Sbjct: 52507 cgaaaaagaagaagaagaag 52488
>gb|BC100539.1| Mus musculus cDNA clone IMAGE:6505570, containing frame-shift errors Length = 1414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 158 gaaaaagaagaagaagaagc 177
>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3 Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the 5'end of the ZNF157 gene for zinc finger protein 157 (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene, complete sequence Length = 152659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 99900 aaaaagaagaagaagaagca 99881
>emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 on chromosome 6q16 Contains the 3' end of the RNAH gene for an RNA helicase, the 5' end of the SIM1 gene for single-minded homolog 1 (Drosophila), an RP42 homolog pseudogene a novel gene and three CpG islands, complete sequence Length = 176932 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 18758 aaaaagaagaagaagaagca 18777
>emb|Z74696.1|HS203C2 Human DNA sequence from clone RP1-203C2 on chromosome X Contains the gene for actin-related protein T1 (ACTRT1), a novel pseudogene, a BTG family member 3 (BTG3) pseudodgene and a actin-related protein pseudogene, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 141617 aaaaagaagaagaagaagca 141636
>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four novel genes, a novel pseudogene, the 5' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445) and two CpG islands, complete sequence Length = 93826 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 85684 aaaaagaagaagaagaagca 85665
>emb|AL683826.14| Human DNA sequence from clone XXyac-21CG7 on chromosome 10 Contains gene FLJ21665, the gene for stresscopin (SPC) (SCP UCN3 UCNIII) and the 5' end of a ribosomal protein L26 (RPL26) pseudogene, complete sequence Length = 103752 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 16163 aaaaagaagaagaagaagca 16182
>emb|AL606923.8| Human DNA sequence from clone RP11-361F19 on chromosome 6 Contains a C2H2 zinc finger protein pseudogene, complete sequence Length = 154285 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 74217 aaaaagaagaagaagaagca 74236
>emb|AL627390.7| Human DNA sequence from clone RP13-278H16 on chromosome X Contains part of the TEX11 gene for testis expressed sequence 11 and a novel pseudogene, complete sequence Length = 175660 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gaaaaagaagaagaagaagc 138 |||||||||||||||||||| Sbjct: 121187 gaaaaagaagaagaagaagc 121206
>emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chromosome 9 Contains part of the TMC1 gene for transmembrane cochlear-expressed 1, a ribosomal protein S20 (RPS20) pseudogene and a ribosomal protein S27a (RPS27A) pseudogene, complete sequence Length = 170815 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 564 aaaaagaagaagaagaagca 545
>emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chromosome 1 Contains the 5' end of a novel gene (KIAA1078) and the 3' end of ribosomal protein L34 pseudogene 1 (RPL34P1) and a CpG island, complete sequence Length = 154879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 112350 aaaaagaagaagaagaagca 112331
>emb|AL442071.30| Human DNA sequence from clone RP11-420K8 on chromosome 1 Contains part of the MACF1 gene for microtubule-actin crosslinking factor 1, a novel gene, a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene and a CpG island, complete sequence Length = 121295 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 49840 aaaaagaagaagaagaagca 49821
>emb|AL449323.19| Human DNA sequence from clone RP11-429L21 on chromosome 9 Contains the 5' end of the TMC1 gene for transmembrane cochlear expressed 1, complete sequence Length = 119378 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaaaagaagaagaagaagca 139 |||||||||||||||||||| Sbjct: 117942 aaaaagaagaagaagaagca 117923
>ref|XM_501852.1| Yarrowia lipolytica CLIB122, YALI0C15070g predicted mRNA Length = 2670 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atcgaaaaagaagaagaaga 135 |||||||||||||||||||| Sbjct: 117 atcgaaaaagaagaagaaga 136 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,360,973 Number of Sequences: 3902068 Number of extensions: 5360973 Number of successful extensions: 732107 Number of sequences better than 10.0: 505 Number of HSP's better than 10.0 without gapping: 507 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 723836 Number of HSP's gapped (non-prelim): 8158 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
