ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal14n08 |
|---|---|
| Clone Library Name | barley_pub |
>GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 51.6 bits (122), Expect(2) = 7e-10 Identities = 23/28 (82%), Positives = 24/28 (85%) Frame = -2 Query: 225 IAKLRHDVEEYAXQFPXIGFEKXXMKYK 142 I+KLRHDVEEYA QFP IGFEK MKYK Sbjct: 489 ISKLRHDVEEYAKQFPTIGFEKETMKYK 516 Score = 29.3 bits (64), Expect(2) = 7e-10 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 301 KAAAAGTKLKDFVATLQSDS 242 K A GTKLKDFVA +QS + Sbjct: 465 KGEAQGTKLKDFVAAMQSSA 484
>GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 47.4 bits (111), Expect(2) = 2e-09 Identities = 20/27 (74%), Positives = 23/27 (85%) Frame = -2 Query: 225 IAKLRHDVEEYAXQFPXIGFEKXXMKY 145 I+KL+HDVEE+A QFP IGFEK MKY Sbjct: 490 ISKLKHDVEEFAKQFPTIGFEKATMKY 516 Score = 32.3 bits (72), Expect(2) = 2e-09 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = -1 Query: 301 KAAAAGTKLKDFVATLQSDSNIQADNCK 218 KA + GTKLKDFV LQ+ S +Q++ K Sbjct: 465 KAESKGTKLKDFVEALQTSSYVQSEISK 492
>GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 51.6 bits (122), Expect(2) = 3e-09 Identities = 23/28 (82%), Positives = 24/28 (85%) Frame = -2 Query: 225 IAKLRHDVEEYAXQFPXIGFEKXXMKYK 142 I+KLRHDVEEYA QFP IGFEK MKYK Sbjct: 489 ISKLRHDVEEYAKQFPTIGFEKETMKYK 516 Score = 27.3 bits (59), Expect(2) = 3e-09 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -1 Query: 301 KAAAAGTKLKDFVATLQSDSNIQADNCK 218 K A GTKLKDFV ++S S IQ++ K Sbjct: 465 KGEAKGTKLKDFVTAMES-SAIQSEISK 491
>GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 53.5 bits (127), Expect = 1e-07 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -2 Query: 246 TATSKLIIAKLRHDVEEYAXQFPXIGFEKXXMKYK 142 +A K IAKLRHDVEEYA QFP IGFEK MKYK Sbjct: 483 SAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYK 517 Score = 33.9 bits (76), Expect = 0.11 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -1 Query: 301 KAAAAGTKLKDFVATLQSDSNIQADNCK 218 KA GTKLKDFVATL+S + I+++ K Sbjct: 465 KAETQGTKLKDFVATLESSAPIKSEIAK 492
>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = -2 Query: 246 TATSKLIIAKLRHDVEEYAXQFPXIGFEKXXMKYK 142 ++T + IAKLRH+VEE+A QFP IGFEK MKYK Sbjct: 482 SSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYK 516 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -1 Query: 301 KAAAAGTKLKDFVATLQSDSNIQADNCK 218 K+ A GTKLKDFV+ ++S S IQ++ K Sbjct: 464 KSEAQGTKLKDFVSAMESSSTIQSEIAK 491
>NU4C_PSINU (Q8WHX8) NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) Length = 498 Score = 33.1 bits (74), Expect = 0.18 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Frame = +2 Query: 14 CKMLGFLLHKXGASSWNLLFTWTCPQLCFLFASLLLKHSSAXFLYF-MXXFSNPIXGNCX 190 C +L +L K G + P FLF+ LL+ + Y + FS P Sbjct: 246 CMLLAGILLKMGGYGLIRINMELLPHAHFLFSPLLVTMGAVQIAYASLISFSLPNIKRRI 305 Query: 191 AYSSTSWRSFAIISLDVAVGLQSGNKVLQ 277 AYSS S F II + + + +LQ Sbjct: 306 AYSSVSHMGFVIIGISSITDIGTNGAILQ 334
>AROB_SYNEL (Q8DKS3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 368 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = -1 Query: 277 LKDFVATLQSDSNIQADNCK----ASPRCGGICXTIPXNRIREXXHEVQ 143 ++ +A LQ D +QA N + + G IC +P IRE H +Q Sbjct: 319 VEGLLALLQHDKKVQAQNVRFILPTAIGHGQICDQVPAELIRETLHRLQ 367
>RHAR_YERPS (Q66FF1) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 290 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 6 PYSVKCLDSFYIXMALHHGIYCLH 77 PY + C D FYI A HH +H Sbjct: 57 PYRITCGDVFYIQAADHHSYESVH 80
>RHAR_YERPE (Q8ZIZ9) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 290 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 6 PYSVKCLDSFYIXMALHHGIYCLH 77 PY + C D FYI A HH +H Sbjct: 57 PYRITCGDVFYIQAADHHSYESVH 80
>O56B4_HUMAN (Q8NH76) Olfactory receptor 56B4| Length = 319 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = +1 Query: 64 SIVYMDLSSVVLPVCFLAVETQQCLXLVLHGLFL 165 +I + D ++ LP+CF + C + G+FL Sbjct: 89 AIFWFDAKAISLPMCFAQIYAIHCFFCIESGIFL 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,503,528 Number of Sequences: 219361 Number of extensions: 625174 Number of successful extensions: 1544 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1544 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
