ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal15a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
5gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, compl... 46 0.14
6gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosom... 46 0.14
7gb|AC103406.7| Mus musculus chromosome 9, clone RP23-106O8, comp... 44 0.55
8gb|AC123614.6| Mus musculus chromosome 9, clone RP23-446P16, com... 44 0.55
9gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, compl... 44 0.55
10gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14... 44 0.55
11gb|AC123927.3| Mus musculus BAC clone RP24-329L20 from chromosom... 42 2.2
12gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, co... 42 2.2
13gb|AC114645.9| Mus musculus chromosome 9, clone RP24-131G14, com... 42 2.2
14gb|AC157650.2| Mus musculus BAC clone RP24-573N21 from chromosom... 42 2.2
15gb|AC122801.3| Mus musculus BAC clone RP23-471L3 from chromosome... 42 2.2
16gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 42 2.2
17emb|AL772400.3| Human DNA sequence from clone RP11-540N4 on chro... 42 2.2
18emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chrom... 42 2.2
19gb|AC079239.6| Homo sapiens BAC clone RP11-722M1 from 4, complet... 42 2.2
20emb|AL953865.9| Zebrafish DNA sequence from clone CH211-113E8 in... 42 2.2
21dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
22gb|AC154455.2| Mus musculus BAC clone RP23-185H13 from 14, compl... 42 2.2
23gb|AC161010.3| Pan troglodytes BAC clone CH251-501B6 from chromo... 42 2.2
24gb|BC106542.1| Xenopus laevis cDNA clone MGC:131302 IMAGE:776469... 40 8.6
25gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, comp... 40 8.6
26ref|XM_706059.1| Candida albicans SC5314 class II myosin heavy c... 40 8.6
27ref|XM_706041.1| Candida albicans SC5314 class II myosin heavy c... 40 8.6
28ref|XM_705012.1| Candida albicans SC5314 hypothetical protein (C... 40 8.6
29gb|AC134471.3| Mus musculus BAC clone RP23-121J12 from chromosom... 40 8.6
30gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete se... 40 8.6
31gb|AC093476.6| Mus musculus chromosome 6, clone RP23-55C15, comp... 40 8.6
32gb|AC084287.9| Mus Musculus S train C57BL6/J chromosome 1 BAC, ... 40 8.6
33gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosom... 40 8.6
34gb|AC131711.3| Mus musculus BAC clone RP23-192M18 from 6, comple... 40 8.6
35gb|AC126050.3| Mus musculus BAC clone RP23-236L17 from 1, comple... 40 8.6
36gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 40 8.6
37gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, comp... 40 8.6
38gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete se... 40 8.6
39gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.6
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
43gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, compl... 40 8.6
44dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
45gb|AC098817.3| Homo sapiens BAC clone RP11-92A1 from 2, complete... 40 8.6
46gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cance... 40 8.6
47dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
48dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
49dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
50gb|AC007632.4|AC007632 Homo sapiens clone R529C19B from chromoso... 40 8.6
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
52emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.6
53emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.6
54emb|AL929063.4| Mouse DNA sequence from clone RP23-291N19 on chr... 40 8.6
55emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chro... 40 8.6
56emb|AL732453.6| Mouse DNA sequence from clone RP23-33D23 on chro... 40 8.6 
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22,
              complete sequence
          Length = 156725

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 582    caaattactttgcaagggtttgaatgctgccagaagaacagcaaccttgttc 633
              ||||||||| ||||||||||||||||| || |||| ||  ||||||||||||
Sbjct: 104374 caaattactctgcaagggtttgaatgccgcgagaacaatggcaaccttgttc 104323
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 582      caaattactttgcaagggtttgaatgctgccagaagaacagcaaccttgttc 633
                ||||||||| ||||||||||||||||| || |||| ||  ||||||||||||
Sbjct: 16788812 caaattactctgcaagggtttgaatgccgcgagaacaatggcaaccttgttc 16788761
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>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full
            insert sequence
          Length = 2132

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 582  caaattactttgcaagggtttgaatgctgccagaagaacagcaaccttgttc 633
            ||||||||| ||||||||||||||||| || |||| ||  ||||||||||||
Sbjct: 1575 caaattactctgcaagggtttgaatgccgcgagaacaatggcaaccttgttc 1524
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 582      caaattactttgcaagggtttgaatgctgccagaagaacagcaaccttgttc 633
                ||||||||| ||||||||||||||||| || |||| ||  ||||||||||||
Sbjct: 16882582 caaattactctgcaagggtttgaatgccgcgagaacaatggcaaccttgttc 16882531
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>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence
          Length = 212613

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 532   tcagagcaatattgtcaggaaga 554
             |||||||||||||||||||||||
Sbjct: 39771 tcagagcaatattgtcaggaaga 39793
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>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence
          Length = 192136

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 532   tcagagcaatattgtcaggaaga 554
             |||||||||||||||||||||||
Sbjct: 62467 tcagagcaatattgtcaggaaga 62445
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>gb|AC103406.7| Mus musculus chromosome 9, clone RP23-106O8, complete sequence
          Length = 174604

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 358    atggaatgaagttaccaagagg 379
              ||||||||||||||||||||||
Sbjct: 162128 atggaatgaagttaccaagagg 162149
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>gb|AC123614.6| Mus musculus chromosome 9, clone RP23-446P16, complete sequence
          Length = 210060

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 358    atggaatgaagttaccaagagg 379
              ||||||||||||||||||||||
Sbjct: 205643 atggaatgaagttaccaagagg 205622
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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 505    acccttctaaaaagcatggtagtata 530
              |||||||||||||||||| |||||||
Sbjct: 152314 acccttctaaaaagcatgatagtata 152339
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>gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14q24.3, complete sequence
          Length = 107731

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 266   atgtattttatgattttattaaccat 291
             ||||||||||| ||||||||||||||
Sbjct: 73216 atgtattttattattttattaaccat 73241
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>gb|AC123927.3| Mus musculus BAC clone RP24-329L20 from chromosome 18, complete
             sequence
          Length = 124464

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 484   ctacttcttgttacattttac 504
             |||||||||||||||||||||
Sbjct: 99301 ctacttcttgttacattttac 99281
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>gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, complete sequence
          Length = 201262

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     atctagcagcccaactgcctg 35
              |||||||||||||||||||||
Sbjct: 172777 atctagcagcccaactgcctg 172757
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>gb|AC114645.9| Mus musculus chromosome 9, clone RP24-131G14, complete sequence
          Length = 214734

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   aaatgtattttatgattttat 284
             |||||||||||||||||||||
Sbjct: 47820 aaatgtattttatgattttat 47800
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>gb|AC157650.2| Mus musculus BAC clone RP24-573N21 from chromosome 14, complete sequence
          Length = 186859

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 410    tacccctgagcttgtcccctg 430
              |||||||||||||||||||||
Sbjct: 170063 tacccctgagcttgtcccctg 170083
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>gb|AC122801.3| Mus musculus BAC clone RP23-471L3 from chromosome 18, complete sequence
          Length = 187926

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 484    ctacttcttgttacattttac 504
              |||||||||||||||||||||
Sbjct: 145704 ctacttcttgttacattttac 145724
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    atctagcagcccaactgcctg 35
             |||||||||||||||||||||
Sbjct: 45584 atctagcagcccaactgcctg 45564
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>emb|AL772400.3| Human DNA sequence from clone RP11-540N4 on chromosome X Contains the
             3' end of the PRPS1 gene for phosphoribosyl pyrophosphate
             synthetase 1 (PRSI), complete sequence
          Length = 74714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 592   tgcaagggtttgaatgctgcc 612
             |||||||||||||||||||||
Sbjct: 33305 tgcaagggtttgaatgctgcc 33285
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>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 598   ggtttgaatgctgccagaagaacag 622
             ||||||| |||||||||||||||||
Sbjct: 52837 ggtttgattgctgccagaagaacag 52813
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>gb|AC079239.6| Homo sapiens BAC clone RP11-722M1 from 4, complete sequence
          Length = 182406

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 130   tgaatatttgaaccatttgaggtat 154
             ||||||||||||| |||||||||||
Sbjct: 20024 tgaatatttgaactatttgaggtat 20048
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>emb|AL953865.9| Zebrafish DNA sequence from clone CH211-113E8 in linkage group 1,
             complete sequence
          Length = 157603

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   atctcatttgaatgaatattt 138
             |||||||||||||||||||||
Sbjct: 73135 atctcatttgaatgaatattt 73115
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>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
          Length = 86065

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   atataacatatggtaatgcta 83
            |||||||||||||||||||||
Sbjct: 9938 atataacatatggtaatgcta 9918
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>gb|AC154455.2| Mus musculus BAC clone RP23-185H13 from 14, complete sequence
          Length = 215308

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 410    tacccctgagcttgtcccctg 430
              |||||||||||||||||||||
Sbjct: 180258 tacccctgagcttgtcccctg 180238
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>gb|AC161010.3| Pan troglodytes BAC clone CH251-501B6 from chromosome unknown, complete
              sequence
          Length = 157204

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 517    agcatggtagtatattcagag 537
              |||||||||||||||||||||
Sbjct: 128036 agcatggtagtatattcagag 128056
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>gb|BC106542.1| Xenopus laevis cDNA clone MGC:131302 IMAGE:7764692, complete cds
          Length = 1005

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 259 gccagaaatgtattttatgatttt 282
           ||||||||||| ||||||||||||
Sbjct: 615 gccagaaatgtgttttatgatttt 592
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>gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, complete sequence
          Length = 229959

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    cacccttctaaaaagcatgg 523
              ||||||||||||||||||||
Sbjct: 167682 cacccttctaaaaagcatgg 167663
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>ref|XM_706059.1| Candida albicans SC5314 class II myosin heavy chain (CaO19.6294),
           mRNA
          Length = 5847

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  tggtaatgctaaaactatca 92
           ||||||||||||||||||||
Sbjct: 720 tggtaatgctaaaactatca 739
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>ref|XM_706041.1| Candida albicans SC5314 class II myosin heavy chain (CaO19.13673),
           mRNA
          Length = 5847

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  tggtaatgctaaaactatca 92
           ||||||||||||||||||||
Sbjct: 720 tggtaatgctaaaactatca 739
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>ref|XM_705012.1| Candida albicans SC5314 hypothetical protein (CaO19.1128), mRNA
          Length = 1387

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  tggtaatgctaaaactatca 92
           ||||||||||||||||||||
Sbjct: 720 tggtaatgctaaaactatca 739
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>gb|AC134471.3| Mus musculus BAC clone RP23-121J12 from chromosome 17, complete
             sequence
          Length = 176628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   catctcatttgaatgaatat 136
             ||||||||||||||||||||
Sbjct: 62630 catctcatttgaatgaatat 62649
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>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence
          Length = 163910

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   ttgcaagggtttgaatgctg 610
             ||||||||||||||||||||
Sbjct: 66347 ttgcaagggtttgaatgctg 66328
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>gb|AC093476.6| Mus musculus chromosome 6, clone RP23-55C15, complete sequence
          Length = 259659

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ctatagccagaaatgtattt 273
             ||||||||||||||||||||
Sbjct: 82114 ctatagccagaaatgtattt 82095
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>gb|AC084287.9| Mus Musculus S train C57BL6/J chromosome 1 BAC,  RP23-145H3 Complete
             Sequence, complete sequence
          Length = 201429

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tgtattttatgattttatta 286
             ||||||||||||||||||||
Sbjct: 54185 tgtattttatgattttatta 54166
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>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete
             sequence
          Length = 181002

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   catctcatttgaatgaatat 136
             ||||||||||||||||||||
Sbjct: 33759 catctcatttgaatgaatat 33778
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>gb|AC131711.3| Mus musculus BAC clone RP23-192M18 from 6, complete sequence
          Length = 228400

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    ctatagccagaaatgtattt 273
              ||||||||||||||||||||
Sbjct: 198775 ctatagccagaaatgtattt 198756
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>gb|AC126050.3| Mus musculus BAC clone RP23-236L17 from 1, complete sequence
          Length = 143097

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tgtattttatgattttatta 286
              ||||||||||||||||||||
Sbjct: 110662 tgtattttatgattttatta 110681
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>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgtattttatgattttatta 286
             ||||||||||||||||||||
Sbjct: 38733 tgtattttatgattttatta 38752
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>gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, complete sequence
          Length = 195985

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tattttatgattttattaac 288
             ||||||||||||||||||||
Sbjct: 91579 tattttatgattttattaac 91560
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>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence
          Length = 152468

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 494   ttacattttacacccttctaaaaa 517
             |||||||||||| |||||||||||
Sbjct: 59931 ttacattttacaaccttctaaaaa 59908
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 558     gtccacggatccatcgtcac 577
               ||||||||||||||||||||
Sbjct: 2029669 gtccacggatccatcgtcac 2029650
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 263      gaaatgtattttatgattttatta 286
                ||||||||| ||||||||||||||
Sbjct: 25789583 gaaatgtatcttatgattttatta 25789606
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 267      tgtattttatgattttattaacca 290
                ||||||||| ||||||||||||||
Sbjct: 12978359 tgtattttaggattttattaacca 12978382
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 398      acctttccattctacccctgagct 421
                |||||| |||||||||||||||||
Sbjct: 20641767 accttttcattctacccctgagct 20641790



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 278     attttattaaccataccttt 297
               ||||||||||||||||||||
Sbjct: 8796793 attttattaaccataccttt 8796774
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>gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, complete sequence
          Length = 202383

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    acacccttctaaaaagcatg 522
              ||||||||||||||||||||
Sbjct: 190627 acacccttctaaaaagcatg 190646
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 398    acctttccattctacccctgagct 421
              |||||| |||||||||||||||||
Sbjct: 103743 accttttcattctacccctgagct 103766
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>gb|AC098817.3| Homo sapiens BAC clone RP11-92A1 from 2, complete sequence
          Length = 154436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    catttgaatgaatatttgaa 141
              ||||||||||||||||||||
Sbjct: 128227 catttgaatgaatatttgaa 128246
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>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 157653

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    agtatattcagagcaatatt 544
              ||||||||||||||||||||
Sbjct: 116931 agtatattcagagcaatatt 116950
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>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0699D11
          Length = 140825

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    attttattaaccataccttt 297
              ||||||||||||||||||||
Sbjct: 114250 attttattaaccataccttt 114231
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>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   attttattaaccataccttt 297
             ||||||||||||||||||||
Sbjct: 32821 attttattaaccataccttt 32802
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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0688H12
          Length = 139279

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 267   tgtattttatgattttattaacca 290
             ||||||||| ||||||||||||||
Sbjct: 88002 tgtattttaggattttattaacca 88025
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>gb|AC007632.4|AC007632 Homo sapiens clone R529C19B from chromosome 18, complete sequence
          Length = 205959

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aatgtattttatgattttat 284
             ||||||||||||||||||||
Sbjct: 71046 aatgtattttatgattttat 71027
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 263      gaaatgtattttatgattttatta 286
                ||||||||| ||||||||||||||
Sbjct: 25717759 gaaatgtatcttatgattttatta 25717782
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   gaaatgtattttatgattttatta 286
             ||||||||| ||||||||||||||
Sbjct: 11034 gaaatgtatcttatgattttatta 11057
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 263    gaaatgtattttatgattttatta 286
              ||||||||| ||||||||||||||
Sbjct: 156821 gaaatgtatcttatgattttatta 156844
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>emb|AL929063.4| Mouse DNA sequence from clone RP23-291N19 on chromosome 2, complete
            sequence
          Length = 120516

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 504  cacccttctaaaaagcatgg 523
            ||||||||||||||||||||
Sbjct: 5734 cacccttctaaaaagcatgg 5715
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>emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chromosome X, complete
             sequence
          Length = 229574

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   cacctttccattctacccct 416
             ||||||||||||||||||||
Sbjct: 39681 cacctttccattctacccct 39700
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>emb|AL732453.6| Mouse DNA sequence from clone RP23-33D23 on chromosome 2, complete
             sequence
          Length = 77977

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tattttatgattttattaac 288
             ||||||||||||||||||||
Sbjct: 29081 tattttatgattttattaac 29100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,166,077
Number of Sequences: 3902068
Number of extensions: 6166077
Number of successful extensions: 123195
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122792
Number of HSP's gapped (non-prelim): 403
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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