Clone Information

BLAST Search Result

Clone Name	rbaal14l04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY177665.1\| Hordeum vulgare subsp. vulgare putative callose s...	807	0.0
2	gb\|AY286332.1\| Lolium multiflorum beta 1,3 glucan synthase (GSL1...	186	4e-44
3	ref\|NM_187562.1\| Oryza sativa (japonica cultivar-group), predic...	159	1e-35
4	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	159	1e-35
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
6	gb\|AC118980.2\| Oryza sativa (japonica cultivar-group) chromosome...	159	1e-35
7	dbj\|AK069531.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	159	1e-35
8	dbj\|AK059373.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	159	1e-35
9	gb\|AY107967.1\| Zea mays PCO108952 mRNA sequence	147	4e-32
10	dbj\|AK060258.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
11	gb\|AF085717.1\|AF085717 Gossypium hirsutum putative callose synth...	66	1e-07
12	gb\|AC170583.6\| Medicago truncatula clone mth2-19b5, complete seq...	64	4e-07
13	gb\|AF304372.2\| Nicotiana alata putative beta-1,3-glucan synthase...	58	3e-05
14	gb\|AY107727.1\| Zea mays PCO075555 mRNA sequence	54	4e-04
15	ref\|NM_179940.1\| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-L...	48	0.026
16	gb\|AC152184.1\| Medicago truncatula chromosome 7 BAC clone mte1-6...	48	0.026
17	gb\|AC122723.6\| Medicago truncatula clone mth2-5i15, complete seq...	48	0.026
18	gb\|AC006922.7\| Arabidopsis thaliana chromosome 2 clone T1J8 map ...	48	0.026
19	gb\|AC149540.1\| Populus trichocarpa clone Pop1-111J19, complete s...	46	0.10
20	gb\|DQ086487.1\| Triticum aestivum putative 1,3-beta-glucan syntha...	46	0.10
21	gb\|AY108207.1\| Zea mays PCO082315 mRNA sequence	46	0.10
22	emb\|AL645524.8\| Mouse DNA sequence from clone RP23-35D7 on chrom...	44	0.41
23	gb\|U88311.2\| Caenorhabditis elegans cosmid C10H11, complete sequ...	42	1.6
24	emb\|BX323461.27\| Zebrafish DNA sequence from clone DKEYP-44B8 in...	42	1.6
25	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	1.6
26	ref\|XM_468556.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.5
27	ref\|NM_193211.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.5
28	ref\|NM_193203.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.5
29	gb\|CP000069.1\| Trypanosoma brucei chromosome 6, complete sequence	40	6.5
30	gb\|AC084046.13\| Trypanosoma brucei chromosome 6 clone RPCI93-3D8...	40	6.5
31	gb\|AC105958.11\| Mus musculus chromosome 9, clone RP24-325P4, com...	40	6.5
32	gb\|AC101848.8\| Mus musculus chromosome 1, clone RP23-267J24, com...	40	6.5
33	gb\|AC143340.4\| Medicago truncatula clone mth2-7f4, complete sequ...	40	6.5
34	gb\|AC137836.25\| Medicago truncatula clone mth2-10f14, complete s...	40	6.5
35	gb\|AC139290.15\| Medicago truncatula clone mth2-23f4, complete se...	40	6.5
36	gb\|AC160125.2\| Mus musculus BAC clone RP23-317M11 from chromosom...	40	6.5
37	emb\|AL499604.9\| Human DNA sequence from clone RP11-23B15 on chro...	40	6.5
38	gb\|AF491780.1\| Homo sapiens neuregulin 1 (NRG1) gene, partial cd...	40	6.5
39	gb\|AY324384.1\| Oryza sativa (japonica cultivar-group) callose sy...	40	6.5
40	gb\|AC107878.2\| Homo sapiens chromosome 18, clone RP11-138C8, com...	40	6.5
41	gb\|AC022833.5\| Homo sapiens chromosome , clone RP11-147C21, comp...	40	6.5
42	gb\|AC021909.7\| Homo sapiens, clone RP11-22F19, complete sequence	40	6.5
43	tpg\|BK000383.1\| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ...	40	6.5
44	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
45	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
46	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
47	gb\|AF230869.1\|AF230869 Mus musculus neurogranin (Ng) gene, compl...	40	6.5
48	dbj\|AP003447.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
49	dbj\|AP003445.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
50	gb\|AC009300.2\| Homo sapiens BAC clone RP11-52A21 from 2, complet...	40	6.5
51	dbj\|AP007257.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
52	dbj\|AP007226.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
53	dbj\|AP005750.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
54	dbj\|AP004685.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
55	dbj\|AP005290.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
56	dbj\|AP004082.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
57	dbj\|AK105109.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.5
58	gb\|AC150892.2\| Mus musculus BAC clone RP24-383C4 from 5, complet...	40	6.5
59	gb\|AC140221.3\| Mus musculus BAC clone RP23-281K10 from 5, comple...	40	6.5
60	gb\|AC073435.26\| Mus musculus strain C57BL/6J chromosome 9 clone ...	40	6.5
61	gb\|AC169673.3\| Mus musculus chromosome 1, clone RP24-188K18, com...	40	6.5
62	emb\|AL670360.8\| Mouse DNA sequence from clone RP23-3A4 on chromo...	40	6.5
63	emb\|AL731771.8\| Mouse DNA sequence from clone RP23-111L20 on chr...	40	6.5

>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
            complete cds
          Length = 6180

 Score =  807 bits (407), Expect = 0.0
 Identities = 462/478 (96%), Gaps = 11/478 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    cttttaccccaaaatcactcattatgctaaactaacacaaatacacaagttattttaaca 60
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6104 cttttaccccaaaatcac-cattat-ctaaactaacacaaatacacaagttattttaaca 6047

                                                                        
Query: 61   caatgattcggcacctggtccttcaagaacaccacctcctataactatcattagtgcaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6046 caatgattcggcacctggtccttcaagaacaccacctcctataactatcattagtgcaaa 5987

                                                                        
Query: 121  aaatgtagcaggcgataacatatacagccatagcaaataactgccagtcaacacggggat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5986 aaatgtagcaggcgataacatatacagccatagcaaataactgccagtcaacacggagat 5927

                                                                        
Query: 181  atatacatctactgctaactcagaacccggggtcaactaactacgaaggtgcatcatctg 240
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5926 atatacatctactgctaactcagaacccgggatcaactaactacgaaggtgcatcatctg 5867

                                                                        
Query: 241  ggtgaggattcaaaagatggatgatgccacatcatcatatgcctgcattctgattgttgc 300
            |||||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 5866 ggtgaggattcaaaagatggatgatgc--------catatgcctgcattctgattgttgc 5815

                                                                        
Query: 301  cagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaacagtagccgtg 360
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 cagccaggatgagagaaatctccaaacctctgctgaaagcctggttgaacagtagccgtg 5755

                                                                        
Query: 361  tctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaaaaatgatca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 tctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaaaaatgatca 5695

                                                                      
Query: 421  ttcccatgccagcatcatacaggngagccaacgagcgcactgtttttncacaaaccca 478
            ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 5694 ttcccatgccagcatcatacaggcgagccaacgagcgcactg-ttttccacaaaccca 5638

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>gb|AY286332.1| Lolium multiflorum beta 1,3 glucan synthase (GSL1) mRNA, complete cds
          Length = 6103

 Score =  186 bits (94), Expect = 4e-44
 Identities = 162/185 (87%)
 Strand = Plus / Minus

                                                                        
Query: 282  cctgcattctgattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcc 341
            |||| ||||||||  | |||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 5714 cctgtattctgatcctggccagcaaggatgagagaaatctccaaacctctgctaaaagcc 5655

                                                                        
Query: 342  tggttgaacagtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagct 401
            ||||| |||| ||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 5654 tggttaaacaatagtcgcgtctggaaggtggaaatgaagggaaaccacgagcaaatggct 5595

                                                                        
Query: 402  atgggcacaaaaatgatcattcccatgccagcatcatacaggngagccaacgagcgcact 461
            ||||| ||||| ||||||||||||||||| |||||||||||  || | |  |||||||||
Sbjct: 5594 atgggtacaaagatgatcattcccatgccggcatcatacagtcgaccaagagagcgcact 5535

                 
Query: 462  gtttt 466
            |||||
Sbjct: 5534 gtttt 5530

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>ref|NM_187562.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6168

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                        
Query: 292  gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
            ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 4846 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 4787

                                                                        
Query: 352  gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
            | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 4786 gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 4727

                                                                   
Query: 412  aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
            |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 4726 aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 4672

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                           
Query: 292     gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
               ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 1055030 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 1054971

                                                                           
Query: 352     gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
               | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 1054970 gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 1054911

                                                                      
Query: 412     aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
               |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 1054910 aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 1054856

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                           
Query: 292     gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
               ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 1055028 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 1054969

                                                                           
Query: 352     gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
               | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 1054968 gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 1054909

                                                                      
Query: 412     aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
               |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 1054908 aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 1054854

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>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
             complete sequence
          Length = 126827

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                         
Query: 292   gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
             ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 75245 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 75186

                                                                         
Query: 352   gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
             | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 75185 gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 75126

                                                                    
Query: 412   aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
             |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 75125 aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 75071

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>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
            insert sequence
          Length = 2087

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                        
Query: 292  gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
            ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 1816 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 1757

                                                                        
Query: 352  gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
            | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 1756 gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 1697

                                                                   
Query: 412  aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
            |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 1696 aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 1642

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>dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F03, full
            insert sequence
          Length = 1245

 Score =  159 bits (80), Expect = 1e-35
 Identities = 151/175 (86%)
 Strand = Plus / Minus

                                                                        
Query: 292  gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
            ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 1048 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 989

                                                                        
Query: 352  gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
            | || || |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||
Sbjct: 988  gaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatcgggacaa 929

                                                                   
Query: 412  aaatgatcattcccatgccagcatcatacaggngagccaacgagcgcactgtttt 466
            |||||||||||||  |||||||||| |||||| |||| |  ||||||||||||||
Sbjct: 928  aaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtttt 874

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>gb|AY107967.1| Zea mays PCO108952 mRNA sequence
          Length = 1033

 Score =  147 bits (74), Expect = 4e-32
 Identities = 136/157 (86%)
 Strand = Plus / Minus

                                                                       
Query: 292 gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
           ||||||||||||| ||||| ||||| |||| ||||||||||||||| |||||||||||||
Sbjct: 739 gattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctggttgaaca 680

                                                                       
Query: 352 gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
           | || || |||||||| ||||| ||||| |||||||||||||| || |||||||| |  |
Sbjct: 679 gaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatgggtatga 620

                                                
Query: 412 aaatgatcattcccatgccagcatcatacaggngagc 448
           |||||| ||| ||||| ||||||||||| ||| ||||
Sbjct: 619 aaatgaccatccccattccagcatcatagaggcgagc 583

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>dbj|AK060258.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E12, full
           insert sequence
          Length = 447

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 292 gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
           ||||||||||||| || |||||||| |||| |||||||||||||||||||||||| || |
Sbjct: 119 gattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctggttaaata 60

                                                
Query: 352 gtagccgtgtctggaaggtggagatgaagggaaacca 388
           | || || |||||||||||||| ||||| ||||||||
Sbjct: 59  gaagtcgggtctggaaggtggatatgaaaggaaacca 23

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>gb|AF085717.1|AF085717 Gossypium hirsutum putative callose synthase catalytic subunit (CFL1)
            mRNA, complete cds
          Length = 6123

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
            ||||||| ||||| ||||| || ||||| | |||||||||||||||||| ||||||||||
Sbjct: 5887 gattgttaccagcgaggataagtgaaatttccaaacctctgctgaaagcttggttgaaca 5828

                                                 
Query: 352  gtagccgtgtctggaaggtggagatgaagggaaacca 388
              | || ||||||||| || |||| ||| || |||||
Sbjct: 5827 tcaaccttgtctggaatgtcgagacgaacgggaacca 5791

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>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
          Length = 113632

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 119/148 (80%)
 Strand = Plus / Minus

                                                                         
Query: 292   gattgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaaca 351
             ||||||| ||||| ||||| | |||||| |  || |||| ||| ||||||||||| ||||
Sbjct: 16784 gattgttcccagcaaggattaaagaaatttctaaccctcggctaaaagcctggttaaaca 16725

                                                                         
Query: 352   gtagccgtgtctggaaggtggagatgaagggaaaccacgagcagatagctatgggcacaa 411
               || || || ||||| || || |  || |||||||||||  |||  || ||||||||||
Sbjct: 16724 tcaggcgagtttggaatgtcgatacaaatggaaaccacgaaaagaatgcaatgggcacaa 16665

                                         
Query: 412   aaatgatcattcccatgccagcatcata 439
             | |||| |||||||||||||||||||||
Sbjct: 16664 agatgagcattcccatgccagcatcata 16637

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>gb|AF304372.2| Nicotiana alata putative beta-1,3-glucan synthase (Gsl1) mRNA,
            complete cds
          Length = 6266

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 327  cctctgctgaaagcctggttgaacagtagccgtgtctggaa 367
            ||||||||||||||||||||||| || |||| |||||||||
Sbjct: 5969 cctctgctgaaagcctggttgaaaagcagccttgtctggaa 5929

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>gb|AY107727.1| Zea mays PCO075555 mRNA sequence
          Length = 2352

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 313  gagaaatcttcaaacctctgctgaaagcctggttgaacagtagccgtgtctggaa 367
            ||||||||| || |||||| ||||| |||||||||||||| | || |||||||||
Sbjct: 2063 gagaaatctgcagacctctactgaaggcctggttgaacagcatccttgtctggaa 2009

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>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
            1,3-beta-glucan synthase/ transferase, transferring
            glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
          Length = 5281

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 333  ctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaacca 388
            |||||||| |||||||| || ||||| | |||||| ||||||||||| || |||||
Sbjct: 4985 ctgaaagcttggttgaagaggagccgagactggaacgtggagatgaaagggaacca 4930

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>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
          Length = 103090

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 313   gagaaatcttcaaacctctgctgaaagcctggttgaacag 352
             ||||||| | ||||||||||||||| || |||||||||||
Sbjct: 10138 gagaaatttgcaaacctctgctgaacgcttggttgaacag 10099

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>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
          Length = 105353

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 313   gagaaatcttcaaacctctgctgaaagcctggttgaacag 352
             ||||||| | ||||||||||||||| || |||||||||||
Sbjct: 81535 gagaaatttgcaaacctctgctgaacgcttggttgaacag 81496

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>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
             sequence
          Length = 134151

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 333   ctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaacca 388
             |||||||| |||||||| || ||||| | |||||| ||||||||||| || |||||
Sbjct: 16172 ctgaaagcttggttgaagaggagccgagactggaacgtggagatgaaagggaacca 16227

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>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                         
Query: 294   ttgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaacagt 353
             ||||| ||||| || ||||||||||| | ||  |||| |||||| || ||||||||||  
Sbjct: 31111 ttgttaccagcaagaatgagagaaatttccagtcctcggctgaaggcttggttgaacatg 31052

                                                
Query: 354   agccgtgtctggaaggtggagatgaagggaaacca 388
             ||||| || |||||||| || | ||| ||||||||
Sbjct: 31051 agccgggtttggaaggttgaaacgaatggaaacca 31017

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>gb|DQ086487.1| Triticum aestivum putative 1,3-beta-glucan synthase 12 (GSL12)
           mRNA, partial cds
          Length = 527

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 294 ttgttgccagccaggatgagagaaatcttcaaacctctgctgaaagcctggttgaacag 352
           ||||| || ||||||||||| || |||| || ||| | |||||| ||||||||||||||
Sbjct: 309 ttgttccccgccaggatgagggagatctccagaccacggctgaaggcctggttgaacag 251

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>gb|AY108207.1| Zea mays PCO082315 mRNA sequence
          Length = 1199

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 326 acctctgctgaaagcctggttgaacag 352
           |||||||||||| ||||||||||||||
Sbjct: 833 acctctgctgaacgcctggttgaacag 807

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>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete
              sequence
          Length = 210163

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 215    aactaactacgaaggtgcatca 236
              ||||||||||||||||||||||
Sbjct: 101967 aactaactacgaaggtgcatca 101946

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>gb|U88311.2| Caenorhabditis elegans cosmid C10H11, complete sequence
          Length = 43525

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 314   agaaatcttcaaacctctgctgaaa 338
             ||||||||||||| |||||||||||
Sbjct: 27623 agaaatcttcaaatctctgctgaaa 27599

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>emb|BX323461.27| Zebrafish DNA sequence from clone DKEYP-44B8 in linkage group 23,
              complete sequence
          Length = 169310

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      accccaaaatcactcattatg 26
              |||||||||||||||||||||
Sbjct: 143227 accccaaaatcactcattatg 143247

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 288     ttctgattgttgccagccaggatga 312
               |||||||||||| ||||||||||||
Sbjct: 5914538 ttctgattgttgacagccaggatga 5914562

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>ref|XM_468556.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 326  acctctgctgaaagcctggttgaa 349
            |||||||||||| |||||||||||
Sbjct: 5847 acctctgctgaaggcctggttgaa 5824

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>ref|NM_193211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5634

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 332  gctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaaccacga 391
            |||||| ||||||||||| || ||||| ||||| ||   ||||| |||||| ||||||||
Sbjct: 5571 gctgaaggcctggttgaagagcagccgagtctgaaactcggagacgaaggggaaccacga 5512

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>ref|NM_193203.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 332  gctgaaagcctggttgaacagtagccgtgtctggaa 367
            |||||| ||||||||||| || || |||||||||||
Sbjct: 1591 gctgaaggcctggttgaagagcagtcgtgtctggaa 1556

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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    gagatgaagggaaaccacgagcag 395
              ||||||||||||||||| ||||||
Sbjct: 240048 gagatgaagggaaaccaggagcag 240071

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>gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8, complete sequence
          Length = 154240

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   gagatgaagggaaaccacgagcag 395
             ||||||||||||||||| ||||||
Sbjct: 33195 gagatgaagggaaaccaggagcag 33218

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>gb|AC105958.11| Mus musculus chromosome 9, clone RP24-325P4, complete sequence
          Length = 195129

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     aaactaacacaaatacacaa 48
              ||||||||||||||||||||
Sbjct: 177607 aaactaacacaaatacacaa 177588

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>gb|AC101848.8| Mus musculus chromosome 1, clone RP23-267J24, complete sequence
          Length = 218654

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 138    acatataca-gccatagcaaataactgc 164
              ||||||||| ||||||||||||||||||
Sbjct: 209538 acatatacaagccatagcaaataactgc 209511

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>gb|AC143340.4| Medicago truncatula clone mth2-7f4, complete sequence
          Length = 114535

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   agagaaatcttcaaacctct 331
             ||||||||||||||||||||
Sbjct: 77880 agagaaatcttcaaacctct 77861

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>gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete sequence
          Length = 140197

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   agagaaatcttcaaacctct 331
             ||||||||||||||||||||
Sbjct: 14584 agagaaatcttcaaacctct 14565

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>gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete sequence
          Length = 127701

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   agagaaatcttcaaacctct 331
             ||||||||||||||||||||
Sbjct: 43397 agagaaatcttcaaacctct 43378

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>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete
            sequence
          Length = 209835

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   aaactaacacaaatacacaa 48
            ||||||||||||||||||||
Sbjct: 7700 aaactaacacaaatacacaa 7681

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>emb|AL499604.9| Human DNA sequence from clone RP11-23B15 on chromosome 9 Contains FOXE1
              gene for forkhead box E1 (thyroid transcription factor 2),
              HEMGN gene for hemogen, 2 novel genes and 5 CpG islands,
              complete sequence
          Length = 160796

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     cacaagttattttaacacaatgat 67
              |||||||||||||| |||||||||
Sbjct: 131886 cacaagttattttaccacaatgat 131909

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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    atatatacatctactgctaa 198
              ||||||||||||||||||||
Sbjct: 604333 atatatacatctactgctaa 604314

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>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
            mRNA, partial cds
          Length = 2727

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 326  acctctgctgaaagcctggttgaa 349
            |||||||||||| |||||||||||
Sbjct: 2664 acctctgctgaaggcctggttgaa 2641

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>gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, complete sequence
          Length = 182375

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     caagttattttaacacaatg 65
              ||||||||||||||||||||
Sbjct: 100148 caagttattttaacacaatg 100129

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>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence
          Length = 177019

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   atatatacatctactgctaa 198
             ||||||||||||||||||||
Sbjct: 16857 atatatacatctactgctaa 16876

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>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence
          Length = 178621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   atatatacatctactgctaa 198
             ||||||||||||||||||||
Sbjct: 68508 atatatacatctactgctaa 68489

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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    atatatacatctactgctaa 198
              ||||||||||||||||||||
Sbjct: 604333 atatatacatctactgctaa 604314

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 326      acctctgctgaaagcctggttgaa 349
                |||||||||||| |||||||||||
Sbjct: 30517903 acctctgctgaaggcctggttgaa 30517926



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 327     cctctgctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaac 386
               |||| |||||| ||||||||||| || ||||  ||||||||   ||||| |||||| |||
Sbjct: 4077979 cctcggctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaac 4078038

                   
Query: 387     cacg 390
               ||||
Sbjct: 4078039 cacg 4078042

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 326      acctctgctgaaagcctggttgaa 349
                |||||||||||| |||||||||||
Sbjct: 35822570 acctctgctgaaggcctggttgaa 35822547

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 332      gctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaaccacga 391
                |||||| ||||||||||| || ||||| ||||| ||   ||||| |||||| ||||||||
Sbjct: 19299787 gctgaaggcctggttgaagagcagccgagtctgaaactcggagacgaaggggaaccacga 19299846



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 332      gctgaaagcctggttgaacagtagccgtgtctggaa 367
                |||||| ||||||||||| || || |||||||||||
Sbjct: 19254742 gctgaaggcctggttgaagagcagtcgtgtctggaa 19254777

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>gb|AF230869.1|AF230869 Mus musculus neurogranin (Ng) gene, complete cds
          Length = 20622

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   aaactaacacaaatacacaa 48
            ||||||||||||||||||||
Sbjct: 2174 aaactaacacaaatacacaa 2193

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>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1619_F12
          Length = 133028

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                          
Query: 332    gctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaaccacga 391
              |||||| ||||||||||| || ||||| ||||| ||   ||||| |||||| ||||||||
Sbjct: 119408 gctgaaggcctggttgaagagcagccgagtctgaaactcggagacgaaggggaaccacga 119467



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 332   gctgaaagcctggttgaacagtagccgtgtctggaa 367
             |||||| ||||||||||| || || |||||||||||
Sbjct: 74363 gctgaaggcctggttgaagagcagtcgtgtctggaa 74398

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>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1029_F04
          Length = 141834

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 332   gctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaaccacga 391
             |||||| ||||||||||| || ||||| ||||| ||   ||||| |||||| ||||||||
Sbjct: 27792 gctgaaggcctggttgaagagcagccgagtctgaaactcggagacgaaggggaaccacga 27851

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>gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complete sequence
          Length = 109939

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   tacagccatagcaaataact 162
             ||||||||||||||||||||
Sbjct: 15667 tacagccatagcaaataact 15648

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>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0019L07
          Length = 131650

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                          
Query: 327    cctctgctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaac 386
              |||| |||||| ||||||||||| || ||||  ||||||||   ||||| |||||| |||
Sbjct: 121632 cctcggctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaac 121691

                  
Query: 387    cacg 390
              ||||
Sbjct: 121692 cacg 121695

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>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0036B04
          Length = 136159

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 327   cctctgctgaaagcctggttgaacagtagccgtgtctggaaggtggagatgaagggaaac 386
             |||| |||||| ||||||||||| || ||||  ||||||||   ||||| |||||| |||
Sbjct: 11238 cctcggctgaaggcctggttgaagagcagcctcgtctggaactcggagacgaaggggaac 11297

                 
Query: 387   cacg 390
             ||||
Sbjct: 11298 cacg 11301

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>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0069C14
          Length = 150579

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 326   acctctgctgaaagcctggttgaa 349
             |||||||||||| |||||||||||
Sbjct: 16466 acctctgctgaaggcctggttgaa 16489

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>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 326    acctctgctgaaagcctggttgaa 349
              |||||||||||| |||||||||||
Sbjct: 155264 acctctgctgaaggcctggttgaa 155287

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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 326   acctctgctgaaagcctggttgaa 349
             |||||||||||| |||||||||||
Sbjct: 13116 acctctgctgaaggcctggttgaa 13093

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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1149_C12
          Length = 120743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 326   acctctgctgaaagcctggttgaa 349
             |||||||||||| |||||||||||
Sbjct: 93285 acctctgctgaaggcctggttgaa 93262

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>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
           insert sequence
          Length = 1292

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 326 acctctgctgaaagcctggttgaa 349
           |||||||||||| |||||||||||
Sbjct: 874 acctctgctgaaggcctggttgaa 851

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>gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complete sequence
          Length = 168742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     aagttattttaacacaatga 66
              ||||||||||||||||||||
Sbjct: 159088 aagttattttaacacaatga 159107

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>gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, complete sequence
          Length = 184203

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     aagttattttaacacaatga 66
              ||||||||||||||||||||
Sbjct: 137073 aagttattttaacacaatga 137054

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>gb|AC073435.26| Mus musculus strain C57BL/6J chromosome 9 clone rp23-383h20, complete
              sequence
          Length = 221953

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     aaactaacacaaatacacaa 48
              ||||||||||||||||||||
Sbjct: 140412 aaactaacacaaatacacaa 140431

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>gb|AC169673.3| Mus musculus chromosome 1, clone RP24-188K18, complete sequence
          Length = 166442

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 138   acatataca-gccatagcaaataactgc 164
             ||||||||| ||||||||||||||||||
Sbjct: 75673 acatatacaagccatagcaaataactgc 75646

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>emb|AL670360.8| Mouse DNA sequence from clone RP23-3A4 on chromosome X, complete
             sequence
          Length = 183543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   agctatgggcacaaaaatga 417
             ||||||||||||||||||||
Sbjct: 22145 agctatgggcacaaaaatga 22126

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>emb|AL731771.8| Mouse DNA sequence from clone RP23-111L20 on chromosome X, complete
             sequence
          Length = 211183

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   ctactgctaactcagaaccc 208
             ||||||||||||||||||||
Sbjct: 97500 ctactgctaactcagaaccc 97519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,430,247
Number of Sequences: 3902068
Number of extensions: 4430247
Number of successful extensions: 83597
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83368
Number of HSP's gapped (non-prelim): 228
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result