>YSC84_YEAST (P32793) Protein YSC84 (LAS seventeen-binding protein 4)|
          Length = 468

 Score =  114 bits (284), Expect = 3e-25
 Identities = 60/123 (48%), Positives = 78/123 (63%)
 Frame = -2

Query: 589 PHAVLSGASGLAILTVVKAGAFLTYKLGTGLVVARRSDGSWSPPSAIASAGLGWGAQVGG 410
           P  VL  A GLAI+TV+KAG   + + G+G++VAR  DG+WS PSAIA AG G G  VG 
Sbjct: 39  PPYVLKRAKGLAIITVLKAGFLFSGRAGSGVIVARLKDGTWSAPSAIAMAGAGAGGMVGV 98

Query: 409 ELMDFVIVLHGPEAVKTFSSRMHFSIGAGLSAAAGPVGRVLEADVRAGNKGSGVCYTYSC 230
           EL DFV +L+  EAV++FS     ++G  +S +AGP+GR  EA   A   G    + YS 
Sbjct: 99  ELTDFVFILNSEEAVRSFSEFGTITLGGNVSVSAGPLGRSAEAAASASTGGVSAVFAYSK 158

Query: 229 SKG 221
           SKG
Sbjct: 159 SKG 161

>LSB3_YEAST (P43603) LAS seventeen-binding protein 3 (LAS17-binding protein 3)|
          Length = 451

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/123 (47%), Positives = 78/123 (63%)
 Frame = -2

Query: 589 PHAVLSGASGLAILTVVKAGAFLTYKLGTGLVVARRSDGSWSPPSAIASAGLGWGAQVGG 410
           P  VL  A GLAI+T++KAG   + + G+G++VAR  DG+WS PSAIA AG G G  VG 
Sbjct: 31  PPDVLKRAKGLAIITILKAGFLFSGRAGSGVIVARLKDGTWSAPSAIAMAGAGAGGMVGI 90

Query: 409 ELMDFVIVLHGPEAVKTFSSRMHFSIGAGLSAAAGPVGRVLEADVRAGNKGSGVCYTYSC 230
           EL DFV +L+  +AVK+FS     ++G  +S +AGP+GR  EA   A   G    + YS 
Sbjct: 91  ELTDFVFILNTQDAVKSFSEFGTITLGGNVSVSAGPLGRSAEAAASASAGGVAAVFAYSK 150

Query: 229 SKG 221
           SKG
Sbjct: 151 SKG 153

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = +3

Query: 249 TPEPLLPALTSASNT-LPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCA 425
           T  PL  + TSA  T +P+GP     P P           T SGP +T +    +  T A
Sbjct: 12  TISPLTTSTTSAPITSMPSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSA 71

Query: 426 PHPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKIAS 560
           P  +   A        P     T  PVP+    +AP  +T   ++
Sbjct: 72  PTTSTTSASTASTTSGPG---TTPSPVPTTSTTSAPTTSTTSAST 113

>RCOR3_MOUSE (Q6PGA0) REST corepressor 3|
          Length = 451

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +3

Query: 210 TRTLPLLQLYV*QTPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVF-TASGP*S 386
           T T+P+  L     P PLL        TLP  PA   +P P+++  R ++   T + P  
Sbjct: 359 TPTVPIATL---NQPPPLLRP------TLPAAPALHRQPPPLQQQARFIQPRPTLNQPPP 409

Query: 387 TMTKSINSPPTCAPHPNPAEAIAD-GGDHDPSDLRATTKPVPSLY 518
            + +  NS P   P  NP   +   GG   PS +   T   PSL+
Sbjct: 410 PLIRPANSMP---PRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH 451

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +3

Query: 249 TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
           TP P  PA    +   P  PA      P         V+T S P   +TK     PT   
Sbjct: 118 TPSPKPPATKPPTYPTPKPPATKPPTPP---------VYTPS-PKPPVTKPPTPKPTPPV 167

Query: 429 H-PNPAEAIADGGDHDPSDLRATTKPVPSLY 518
           + PNP   +     H PS    T+KP P +Y
Sbjct: 168 YTPNPKPPVTKPPTHTPSPKPPTSKPTPPVY 198

>AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 907

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +3

Query: 249 TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
           TP P+  AL + S   P  P+     A  E  +  +K    S P  T T S  +PP  A 
Sbjct: 463 TPTPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETSVPVVTPTAS-TAPPVPAT 521

Query: 429 HPNPAEAIA 455
            P+PA A+A
Sbjct: 522 APSPAPAVA 530

>BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog|
          Length = 233

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 408 SPPTCAPHPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPA 536
           +P   APHP+PA    +   H P  L  +  PVP+L+  +A A
Sbjct: 61  APALLAPHPHPALHKPEHHHHHPYFLTTSGVPVPALFPHHAHA 103

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 30/116 (25%), Positives = 37/116 (31%), Gaps = 5/116 (4%)
 Frame = +3

Query: 249  TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STM-----TKSINSP 413
            TP P      S      T P     P+P           T   P +T      T +   P
Sbjct: 1577 TPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLP 1636

Query: 414  PTCAPHPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKIASPLAPLRT 581
            PT  P P P           PS    TT P P +     P  TT    +P +P+ T
Sbjct: 1637 PTTTPSPPPTTTTTPPPTTTPSP-PTTTTPSPPITTTTTPPPTT----TPSSPITT 1687



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
 Frame = +3

Query: 264  LPALTSAS--NTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAPHPN 437
            LP  T+ S   T  T P     P+P             + P +  T +   PPT  P P 
Sbjct: 1517 LPPTTTPSPPTTTTTTPPPTTTPSP-----------PTTTPITPPTSTTTLPPTTTPSPP 1565

Query: 438  PAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTT 545
            P           PS    TT   P++     P  TT
Sbjct: 1566 PTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTT 1601

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/101 (24%), Positives = 44/101 (43%)
 Frame = +3

Query: 252 PEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAPH 431
           P P  P  + A  T PT P+ +  P+P+      +    A    +       +PPT +P 
Sbjct: 288 PSPPSPPPSPAPPTPPTPPSPS-PPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPS 346

Query: 432 PNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKI 554
           P+P+ + +      PS    +  P+PS   + +P+   VK+
Sbjct: 347 PSPSPSPSPSPSPSPSP-SPSPSPIPSPSPKPSPSPVAVKL 386

>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
 Frame = +3

Query: 246 QTPEPLLPALTSASNTLPTGPAAALK--PAPIEKCIRLLKVFTASGP*STMTKSINSPPT 419
           +TPE  + ++  A  T P  P  A +  PAP+     +      + P  T +     PP 
Sbjct: 337 ETPE--VASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPV 394

Query: 420 CAPHPNPAEAIADGGDHDPSDL-RATTKPVPSLYVRN-----APAFTTVKIAS 560
            AP P P+       D  P  L     +PVP++         APA   V IA+
Sbjct: 395 IAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAA 447

>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 1/112 (0%)
 Frame = +3

Query: 249 TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
           TP+P  P  T      P+      KP P          +T S    T      +PPT  P
Sbjct: 140 TPKPTPPTYT------PSPKPPTPKPTP--------PTYTPSPKPPTHPTPKPTPPTYTP 185

Query: 429 HPNPAEAIADGGDHDPSDLRATTKPVPSLYVRN-APAFTTVKIASPLAPLRT 581
            P P         + PS    T KP P  Y  +  P  T      P  P  T
Sbjct: 186 SPKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYT 237



 Score = 29.6 bits (65), Expect = 6.8
 Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
 Frame = +3

Query: 249 TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSIN-SPPTCA 425
           TP P  PA T      PT P     P P            +  P +T   +   +PPT  
Sbjct: 75  TPSPKPPA-TKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYT 133

Query: 426 PHPNPAEAIADGGDHDPSDLRATTKPVPSLYVRN--APAFTTVKIASP 563
           P P P         + PS    T KP P  Y  +   P   T K   P
Sbjct: 134 PSPKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTHPTPKPTPP 181

>DAMX_SERMA (P45459) Protein damX (Fragment)|
          Length = 214

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 273 LTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAPHPNP 440
           +T A++TLPT PA  +  A   +  R ++  TA     T  K+  + PT   H +P
Sbjct: 45  MTGAASTLPTAPATVMSGAAAREATRPVQ-GTAPQQHKTPAKTAAAKPTATQHKSP 99

>RCOR3_HUMAN (Q9P2K3) REST corepressor 3|
          Length = 495

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
 Frame = +3

Query: 210 TRTLPLLQLYV*QTPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVF-TASGP*S 386
           T T P+  L     P PLL        TLP  PA   +P P+++  R ++   T + P  
Sbjct: 403 TPTAPIATL---NQPPPLLRP------TLPAAPALHRQPPPLQQQARFIQPRPTLNQPPP 453

Query: 387 TMTKSINSPPTCAPHPNPAEAIAD-GGDHDPSDLRATTKPVPSLY 518
            + +  NS P   P  NP   ++  GG   PS +   T    SL+
Sbjct: 454 PLIRPANSMP---PRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 495

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 29/106 (27%), Positives = 41/106 (38%)
 Frame = +3

Query: 249  TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
            T +P+ P LTS +    T  ++   P P+E     L+ FT +    T             
Sbjct: 1625 TDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVT------------- 1671

Query: 429  HPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKIASPL 566
                 EAIA GG          +K + S  VR  P  TT +  SP+
Sbjct: 1672 ----PEAIAQGGQ---------SKTLRSSTVRAMPVPTTPEFQSPV 1704

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 29/106 (27%), Positives = 41/106 (38%)
 Frame = +3

Query: 249  TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
            T +P+ P LTS +    T  ++   P P+E     L+ FT +    T             
Sbjct: 1707 TDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVT------------- 1753

Query: 429  HPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKIASPL 566
                 EAIA GG          +K + S  VR  P  TT +  SP+
Sbjct: 1754 ----PEAIAQGGQ---------SKTLRSSTVRAMPVPTTPEFQSPV 1786

>GCSP_GLUOX (Q5FRY0) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 951

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 388 VLHGPEAVKTFSSRMHFSIGAGLSAAAGPVGRVLEADV 275
           V HGPE +K  ++R H  + A LSA    +G  +E DV
Sbjct: 353 VYHGPEGLKAIAARTH-RMAAILSAGLKTLGATVETDV 389

>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal|
           transduction protein Xp95)
          Length = 867

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 258 PLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAPHPN 437
           P +P+  SA +++ T  A +  P P  + +   K      P   M  +   P + A   N
Sbjct: 722 PQVPSYQSAPSSISTNIATSSIPTPAPRTVFSAKQPPPRPPPPAMPSASPVPASAAQASN 781

Query: 438 PAEAIADGGDHDPSDL---RATTKPVPS 512
           PA   A      PS+    +A   P PS
Sbjct: 782 PAPTAAADSSQPPSNTIPSQAQGPPYPS 809

>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 374

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 249 TPEPLLPALTSASNTLPTGPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTCAP 428
           +P P  PA T+ +      PAA+  PAP  K  +L+ + T++G    + + +   P   P
Sbjct: 162 SPAPARPAATARA----AAPAASHSPAPKRKPYKLVAIGTSTGGPVALQRVLTQLPANFP 217

Query: 429 HP 434
            P
Sbjct: 218 AP 219

>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
            stimulating factor) (Superficial zone proteoglycan)
            [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
 Frame = +3

Query: 258  PLLPALTSASNTLPT-----GPAAALKPAPIEKCIRLLKVFTASGP*STMTKSINSPPTC 422
            P  PA T+   T PT      P    KPAP E     L   T  GP  T T S    PT 
Sbjct: 770  PKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKE-----LAPTTTKGP--TSTTSDKPAPTT 822

Query: 423  APHPNPAEAIADGGDHDPSDLRATTKPVPSLYVRNAPAFTTVKIASP 563
                 P           P +   TT   P+      P  TT ++++P
Sbjct: 823  PKETAPT---------TPKEPAPTTPKKPAPTTPETPPPTTSEVSTP 860

>GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30]
          Length = 467

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
 Frame = +3

Query: 252 PEPLLPALTSA--SNTLPTGPAAALKPA--PIEKCIRLLKVFTASGP*STMTKSINSPPT 419
           P PLLP+  S      L T P ++L PA  P        +V + SG       + + PP 
Sbjct: 105 PPPLLPSAPSLPLEPPLSTPPQSSLYPALTPSLGAKPKPQVLSDSGGPLIDLLTEDPPPY 164

Query: 420 CAPHPNPAEAIADGGDHDPSDLRATTKPVPS-LYVRNAPAFTTVKIASPLAPLRT 581
             P P P++   D G+  P+       P+ S L  R  P        S   PLRT
Sbjct: 165 RDPRPPPSDRDGDSGEATPAGEAPDPSPMASRLRGRREPPVAD-STTSQAFPLRT 218

>GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p15; Inner|
           coat protein p12; Core shell protein p30; Nucleoprotein
           p10]
          Length = 537

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
 Frame = +3

Query: 252 PEPLLPALTSA--SNTLPTGPAAALKPA--PIEKCIRLLKVFTASGP*STMTKSINSPPT 419
           P PLLP+  S      L T P ++L PA  P        +V + SG       + + PP 
Sbjct: 105 PPPLLPSAPSLPLEPPLSTPPQSSLYPALTPSLGAKPKPQVLSDSGGPLIDLLTEDPPPY 164

Query: 420 CAPHPNPAEAIADGGDHDPSDLRATTKPVPS-LYVRNAPAFTTVKIASPLAPLRT 581
             P P P++   D G+  P+       P+ S L  R  P        S   PLRT
Sbjct: 165 RDPRPPPSDRDGDSGEATPAGEAPDPSPMASRLRGRREPPVAD-STTSQAFPLRT 218

>ELK1_MOUSE (P41969) ETS domain-containing protein Elk-1|
          Length = 429

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
 Frame = +3

Query: 252 PEPLLPALTSASNTLPTGPAAALKPAPIEKCIR-------LLKVFTASGP*STMTKSINS 410
           P  +LP  T A    P   + +  P P+E C+        L  + T     +  ++ ++ 
Sbjct: 178 PASVLPNTTPAGVPAPASGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNQKSEELSL 237

Query: 411 PPTCAPHPNPAEAIADGGDHDPSDLRA 491
            P+   HP P EA  +G   +    RA
Sbjct: 238 DPSFG-HPQPPEAKVEGPKEELEAARA 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,379,132
Number of Sequences: 219361
Number of extensions: 1786090
Number of successful extensions: 5916
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5903
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)