>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1|
          Length = 145

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
 Frame = -2

Query: 651 FSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPR 472
           FS+RSF +K+ P   +               F SF+T+ YKL+Y E+P+GIK+++ T   
Sbjct: 43  FSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLG 89

Query: 471 TGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 331
            G  RD L HIYS LYVE+VVKNPL   G  ++ +LF   LD YV++L
Sbjct: 90  VGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5|
           homolog) (Multiple myeloma protein 2) (MUM-2)
          Length = 145

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = -2

Query: 651 FSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPR 472
           FS+RSF +K+ P   +               F +F+T+ YKL+Y E+P+GIK+++ T   
Sbjct: 43  FSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLG 89

Query: 471 TGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 331
            G  RD L HIYS LYVE VVKNPL   G  ++ +LF   LD YV++L
Sbjct: 90  VGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5|
          Length = 155

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
 Frame = -2

Query: 558 FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIY-SLYVEYVVKNPLYAPGSP 382
           F S+ T+ YKL++ E+P+ ++LI +T+P+       L+ IY +LYVE+VVK+PLY    P
Sbjct: 70  FMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPP 129

Query: 381 ------IKCDLFNKHLDQYVKTL 331
                 I C++F   LD++V+TL
Sbjct: 130 SAEEGGINCEIFRITLDRFVRTL 152

>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog)
          Length = 219

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -2

Query: 594 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 418
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 417 VVKNPLYAPGSPIKCDLFNKHL 352
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog) (Hematopoietic stem/progenitor cell
           protein 172)
          Length = 219

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -2

Query: 594 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 418
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 417 VVKNPLYAPGSPIKCDLFNKHL 352
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa|
           subunit)
          Length = 219

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = -2

Query: 450 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 331
           L+ +Y LY +YV+K+P Y+   PI+ +LF++ + + V+ L
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>BET5_YEAST (Q03630) Transport protein particle 18 kDa subunit (TRAPP 18 kDa|
           subunit)
          Length = 159

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -2

Query: 651 FSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPR 472
           FSLRS T K+   S ++                S  T  Y+++   + SG+  +LL+  +
Sbjct: 49  FSLRSITQKLSKGSVKN-------------DIRSISTGKYRVHTYCTASGLWFVLLSDFK 95

Query: 471 TGDQRDALKHIYS-LYVEYVVKNPL 400
                  L++IYS +YV+YV  N L
Sbjct: 96  QQSYTQVLQYIYSHIYVKYVSNNLL 120

>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)|
          Length = 140

 Score = 32.7 bits (73), Expect = 0.96
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -2

Query: 546 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 379
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121

Query: 378 KCDLFNK 358
           +   F++
Sbjct: 122 RSSAFDR 128

>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)|
           (MBP-1-interacting protein 2A) (MIP-2A)
          Length = 140

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -2

Query: 546 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 379
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121

Query: 378 KCDLFNK 358
           +   F++
Sbjct: 122 RSSAFDR 128

>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase|
           type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase
           7)
          Length = 1080

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 212 LFGLIILFVEKFVASRMIQ--TCLVQKWSR*ISLYCTLAACIDGLVYRLRFDSYTLXHCP 39
           + G+  L +  F A  ++    CL+++W R ++L     AC+  L Y L FD++T   C 
Sbjct: 65  ILGMAFLVLAVFAALSVLMYVECLLRRWLRALALLTW--ACLVALGYVLVFDAWTKAACA 122

Query: 38  -EFTPF 24
            E  PF
Sbjct: 123 WEQVPF 128

>TRI66_MOUSE (Q924W6) Tripartite motif protein 66|
          Length = 1209

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 139 SGPVESHCIVHLQPALMVLCTDCDLIAIHS 50
           SG    +C +H Q  L + C  CD++  HS
Sbjct: 58  SGDFALYCPLHTQEVLKLFCETCDVLTCHS 87

>TRI66_HUMAN (O15016) Tripartite motif protein 66|
          Length = 1214

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 136 GPVESHCIVHLQPALMVLCTDCDLIAIHSITVL 38
           G    +C +H Q  L + C  CD++  HS  V+
Sbjct: 59  GDFTLYCPLHTQEVLKLFCETCDMLTCHSCLVV 91

>DCAM_TRYBB (P50244) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 370

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 582 LLPGQGCSFHSFKTNTYKLNYMESPSGI 499
           + P + CSF S++TNT  LNY +   G+
Sbjct: 263 ITPEEHCSFASYETNTCALNYSKCICGV 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,623,343
Number of Sequences: 219361
Number of extensions: 2057555
Number of successful extensions: 5346
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5339
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)