Clone Information

BLAST Search Result

Clone Name	rbaal14j17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY100481.1\| Zea mays nucleosome/chromatin assembly factor gro...	244	2e-61
2	gb\|AY109354.1\| Zea mays CL199_1 mRNA sequence	244	2e-61
3	ref\|NM_191696.1\| Oryza sativa (japonica cultivar-group), predic...	240	4e-60
4	gb\|AF250047.1\|AF250047 Zea mays WD-repeat protein RBAP1 (rbap1) ...	240	4e-60
5	dbj\|AK111794.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	240	4e-60
6	gb\|AF384037.1\| Zea mays nucleosome/chromatin assembly factor C (...	232	9e-58
7	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	6e-25
8	dbj\|AP002901.2\| Oryza sativa (japonica cultivar-group) genomic D...	123	6e-25
9	ref\|NM_127510.3\| Arabidopsis thaliana FVE (FVE) AT2G19520 (FVE) ...	115	1e-22
10	gb\|AF498102.1\| Arabidopsis thaliana MSI4 (FVE) mRNA, complete cds	115	1e-22
11	gb\|AY081447.1\| Arabidopsis thaliana putative WD-40 repeat protei...	115	1e-22
12	gb\|AY059799.1\| Arabidopsis thaliana putative WD-40 repeat protei...	115	1e-22
13	gb\|AY057655.1\| Arabidopsis thaliana At2g19520/F3P11.12 mRNA, com...	115	1e-22
14	gb\|AF028711.1\|AF028711 Arabidopsis thaliana WD-40 repeat protein...	115	1e-22
15	ref\|NM_119118.2\| Arabidopsis thaliana MSI5 AT4G29730 (MSI5) mRNA...	88	3e-14
16	gb\|BT010610.1\| Arabidopsis thaliana At4g29730 gene, complete cds	88	3e-14
17	gb\|AY830931.1\| Pisum sativum FVE (FVE) mRNA, complete cds	88	3e-14
18	dbj\|AK176425.1\| Arabidopsis thaliana mRNA for WD-40 repeat-like ...	88	3e-14
19	gb\|AY849994.1\| Arabidopsis thaliana ecotype Lz-0 FVE (FVE) gene,...	82	2e-12
20	gb\|AF498101.1\| Arabidopsis thaliana MSI4 (FVE) gene, complete cds	80	8e-12
21	gb\|AC005917.3\| Arabidopsis thaliana chromosome 2 clone F3P11 map...	80	8e-12
22	gb\|AC127170.11\| Medicago truncatula clone mth2-35d10, complete s...	68	3e-08
23	gb\|AC160012.1\| Medicago truncatula chromosome 2 BAC clone mth2-1...	68	3e-08
24	gb\|BT012704.1\| Lycopersicon esculentum clone 113579R, mRNA sequence	58	3e-05
25	emb\|AL079344.1\|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BA...	58	3e-05
26	emb\|AL161575.2\|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, ...	58	3e-05
27	gb\|AC155896.2\| Medicago truncatula chromosome 2 BAC clone mth2-8...	56	1e-04
28	emb\|AJ631221.1\| Silene diclinis partial mRNA for putative WD rep...	46	0.11
29	emb\|AJ631220.1\| Silene diclinis partial mRNA for putative WD rep...	46	0.11
30	emb\|AJ631219.1\| Silene dioica partial mRNA for putative WD repea...	46	0.11
31	emb\|AJ631218.1\| Silene dioica partial mRNA for putative WD repea...	46	0.11
32	emb\|Y18519.1\|SLA18519 Silene latifolia mRNA for X1 protein	46	0.11
33	emb\|Y18517.1\|SLA18517 Silene latifolia mRNA for Y1 protein	46	0.11
34	gb\|AC162373.11\| Mus musculus chromosome 18, clone RP23-410M11, c...	42	1.8
35	gb\|AC129178.4\| Mus musculus BAC clone RP23-217G18 from chromosom...	42	1.8
36	gb\|AC124128.11\| Mus musculus chromosome 6, clone RP23-158O11, co...	42	1.8
37	gb\|AC164631.5\| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cance...	42	1.8
38	gb\|AE017131.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	7.0
39	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	7.0
40	gb\|AC122896.4\| Mus musculus BAC clone RP23-69N8 from chromosome ...	40	7.0
41	gb\|AC131114.3\| Mus musculus BAC clone RP24-212G16 from chromosom...	40	7.0
42	gb\|AC133523.3\| Mus musculus BAC clone RP23-34E20 from 19, comple...	40	7.0
43	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	7.0
44	emb\|AJ414147.1\| Yersinia pestis strain CO92 complete genome; seg...	40	7.0
45	gb\|AY096002.1\| Mus musculus NADH dehydrogenase:ubiquinone Fe-S p...	40	7.0
46	gb\|AC011402.9\| Homo sapiens chromosome 5 clone CTB-38B5, complet...	40	7.0
47	gb\|AC011370.4\| Homo sapiens chromosome 5 clone CTB-107A22, compl...	40	7.0
48	emb\|AL929240.18\| Mouse DNA sequence from clone RP23-245A10 on ch...	40	7.0
49	gb\|AC079444.28\| Mus musculus strain C57BL/6J chromosome 10 clone...	40	7.0
50	gb\|AE017125.1\| Helicobacter hepaticus ATCC 51449, complete genome	40	7.0
51	emb\|AL807828.14\| Mouse DNA sequence from clone RP23-184N11 on ch...	40	7.0
52	gb\|AC131692.5\| Mus musculus BAC clone RP23-391B20 from 19, compl...	40	7.0
53	gb\|DQ250682.1\| Ipomoea nil FVE mRNA, partial cds	40	7.0
54	gb\|AC090503.12\| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Ca...	40	7.0

>gb|AY100481.1| Zea mays nucleosome/chromatin assembly factor group C (nfc101) mRNA,
            complete cds
          Length = 1788

 Score =  244 bits (123), Expect = 2e-61
 Identities = 197/222 (88%)
 Strand = Plus / Minus

                                                                        
Query: 298  cctcggagtgcagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtc 357
            |||||||| ||| ||||||| ||||| ||||||  |||||||||||| |||||| || ||
Sbjct: 1507 cctcggagcgcaactggccaggtgagccttgaaattctccagctctgtaagaacttcatc 1448

                                                                        
Query: 358  ctctgggcggtngatcaaatcactcatacgccatatctgcaaagttccacctccaccggt 417
            ||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||| ||
Sbjct: 1447 ctctgggcggtagatcaaatcactcattcgccatatctgcagtgttccacctccaccagt 1388

                                                                        
Query: 418  gctctcaccatcatcagatacactcacaatggtccaagggtctgatgagttccagtggaa 477
            ||||||||||||||| || ||||| ||||| |||||||| ||||| || |||||||||||
Sbjct: 1387 gctctcaccatcatctgagacactgacaattgtccaaggatctgacgaattccagtggaa 1328

                                                      
Query: 478  atctacaatcttatccctatgacctgcatgttgaaagaaaag 519
             ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 1327 gtctacgatcttatccctatgaccagcatgctgaaagaaaag 1286

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>gb|AY109354.1| Zea mays CL199_1 mRNA sequence
          Length = 2472

 Score =  244 bits (123), Expect = 2e-61
 Identities = 197/222 (88%)
 Strand = Plus / Minus

                                                                        
Query: 298  cctcggagtgcagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtc 357
            |||||||| ||| ||||||| ||||| ||||||  |||||||||||| |||||| || ||
Sbjct: 2133 cctcggagcgcaactggccaggtgagccttgaaattctccagctctgtaagaacttcatc 2074

                                                                        
Query: 358  ctctgggcggtngatcaaatcactcatacgccatatctgcaaagttccacctccaccggt 417
            ||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||| ||
Sbjct: 2073 ctctgggcggtagatcaaatcactcattcgccatatctgcagtgttccacctccaccagt 2014

                                                                        
Query: 418  gctctcaccatcatcagatacactcacaatggtccaagggtctgatgagttccagtggaa 477
            ||||||||||||||| || ||||| ||||| |||||||| ||||| || |||||||||||
Sbjct: 2013 gctctcaccatcatctgagacactgacaattgtccaaggatctgacgaattccagtggaa 1954

                                                      
Query: 478  atctacaatcttatccctatgacctgcatgttgaaagaaaag 519
             ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 1953 gtctacgatcttatccctatgaccagcatgctgaaagaaaag 1912

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>ref|NM_191696.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1362

 Score =  240 bits (121), Expect = 4e-60
 Identities = 189/212 (89%)
 Strand = Plus / Minus

                                                                        
Query: 308  cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
            |||||||||||||||| ||||||| |||||||||||| |||||| || || ||||| |||
Sbjct: 1346 cagctggccaagtgagtcttgaagttctccagctctgcaagaacttcatcttctggacgg 1287

                                                                        
Query: 368  tngatcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcacca 427
            |  ||||  |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 1286 tatatcaggtcactcatgcgccatatctgcaatgttccacctccaccagtactctcacca 1227

                                                                        
Query: 428  tcatcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatc 487
            |||||||| ||||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 1226 tcatcagacacactcacaatagtccaaggatccgaagaattccagtggaagtctacaatc 1167

                                            
Query: 488  ttatccctatgacctgcatgttgaaagaaaag 519
            |||||||||||||| |||||||||||||||||
Sbjct: 1166 ttatccctatgaccagcatgttgaaagaaaag 1135

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>gb|AF250047.1|AF250047 Zea mays WD-repeat protein RBAP1 (rbap1) mRNA, complete cds
          Length = 1777

 Score =  240 bits (121), Expect = 4e-60
 Identities = 189/212 (89%)
 Strand = Plus / Minus

                                                                        
Query: 308  cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
            |||||||||||||||| ||||||  |||||||||||| |||||| || ||||||||||||
Sbjct: 1652 cagctggccaagtgagccttgaaattctccagctctgcaagaacttcatcctctgggcgg 1593

                                                                        
Query: 368  tngatcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcacca 427
            | ||||||||||||||| ||||| |||||||  |||||||||||||| |||||||| |||
Sbjct: 1592 tagatcaaatcactcatgcgccaaatctgcagtgttccacctccaccagtgctctcgcca 1533

                                                                        
Query: 428  tcatcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatc 487
            |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||||||
Sbjct: 1532 tcatcagagacactgacaattgtccaaggatctgacgaattccagtggaagtctacaatc 1473

                                            
Query: 488  ttatccctatgacctgcatgttgaaagaaaag 519
            |||||||||||||| || || |||||||||||
Sbjct: 1472 ttatccctatgaccagcgtgctgaaagaaaag 1441

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>dbj|AK111794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104J19, full
            insert sequence
          Length = 1840

 Score =  240 bits (121), Expect = 4e-60
 Identities = 189/212 (89%)
 Strand = Plus / Minus

                                                                        
Query: 308  cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
            |||||||||||||||| ||||||| |||||||||||| |||||| || || ||||| |||
Sbjct: 1516 cagctggccaagtgagtcttgaagttctccagctctgcaagaacttcatcttctggacgg 1457

                                                                        
Query: 368  tngatcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcacca 427
            |  ||||  |||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct: 1456 tatatcaggtcactcatgcgccatatctgcaatgttccacctccaccagtactctcacca 1397

                                                                        
Query: 428  tcatcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatc 487
            |||||||| ||||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 1396 tcatcagacacactcacaatagtccaaggatccgaagaattccagtggaagtctacaatc 1337

                                            
Query: 488  ttatccctatgacctgcatgttgaaagaaaag 519
            |||||||||||||| |||||||||||||||||
Sbjct: 1336 ttatccctatgaccagcatgttgaaagaaaag 1305

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>gb|AF384037.1| Zea mays nucleosome/chromatin assembly factor C (nfc102) mRNA,
            complete cds
          Length = 1808

 Score =  232 bits (117), Expect = 9e-58
 Identities = 188/212 (88%)
 Strand = Plus / Minus

                                                                        
Query: 308  cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
            ||||||||||| |||| ||||||  |||||||||||| |||||| || ||||||||||||
Sbjct: 1564 cagctggccaaatgagccttgaaattctccagctctgcaagaacttcatcctctgggcgg 1505

                                                                        
Query: 368  tngatcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcacca 427
            | ||||||||||||||| ||||| |||||||  |||||||||||||| |||||||| |||
Sbjct: 1504 tagatcaaatcactcatgcgccaaatctgcagtgttccacctccaccagtgctctcgcca 1445

                                                                        
Query: 428  tcatcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatc 487
            |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||||||
Sbjct: 1444 tcatcagagacactgacaattgtccaaggatctgacgaattccagtggaagtctacaatc 1385

                                            
Query: 488  ttatccctatgacctgcatgttgaaagaaaag 519
            |||||||||||||| || || |||||||||||
Sbjct: 1384 ttatccctatgaccagcgtgctgaaagaaaag 1353

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                            
Query: 394      ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
                |||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 29499658 ctgcaatgttccacctccaccagtactctcaccatcatcagacacactcacaatagtcca 29499599

                                                          
Query: 454      agggtctgatgagttccagtggaaatctacaatcttatccct 495
                ||| || || || ||||||||||| |||||||||||||||||
Sbjct: 29499598 aggatccgaagaattccagtggaagtctacaatcttatccct 29499557



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                            
Query: 308      cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
                |||||||||||||||| ||||||| |||||||||||| |||||| || || ||||| |||
Sbjct: 29499881 cagctggccaagtgagtcttgaagttctccagctctgcaagaacttcatcttctggacgg 29499822

                                            
Query: 368      tngatcaaatcactcatacgccatatct 395
                |  ||||  |||||||| ||||||||||
Sbjct: 29499821 tatatcaggtcactcatgcgccatatct 29499794



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 493      cctatgacctgcatgttgaaagaaaag 519
                ||||||||| |||||||||||||||||
Sbjct: 29498881 cctatgaccagcatgttgaaagaaaag 29498855

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>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456F08
          Length = 156850

 Score =  123 bits (62), Expect = 6e-25
 Identities = 92/102 (90%)
 Strand = Plus / Minus

                                                                         
Query: 394   ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
             |||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 65932 ctgcaatgttccacctccaccagtactctcaccatcatcagacacactcacaatagtcca 65873

                                                       
Query: 454   agggtctgatgagttccagtggaaatctacaatcttatccct 495
             ||| || || || ||||||||||| |||||||||||||||||
Sbjct: 65872 aggatccgaagaattccagtggaagtctacaatcttatccct 65831



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                         
Query: 308   cagctggccaagtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcgg 367
             |||||||||||||||| ||||||| |||||||||||| |||||| || || ||||| |||
Sbjct: 66155 cagctggccaagtgagtcttgaagttctccagctctgcaagaacttcatcttctggacgg 66096

                                         
Query: 368   tngatcaaatcactcatacgccatatct 395
             |  ||||  |||||||| ||||||||||
Sbjct: 66095 tatatcaggtcactcatgcgccatatct 66068



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 493   cctatgacctgcatgttgaaagaaaag 519
             ||||||||| |||||||||||||||||
Sbjct: 65155 cctatgaccagcatgttgaaagaaaag 65129

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>ref|NM_127510.3| Arabidopsis thaliana FVE (FVE) AT2G19520 (FVE) mRNA, complete cds
          Length = 1871

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1515 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1456

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1455 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1396

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1395 tccctgtgaccagcatgctggaagaa 1370

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>gb|AF498102.1| Arabidopsis thaliana MSI4 (FVE) mRNA, complete cds
          Length = 1871

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1516 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1457

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1456 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1397

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1396 tccctgtgaccagcatgctggaagaa 1371

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>gb|AY081447.1| Arabidopsis thaliana putative WD-40 repeat protein, MSI4 (At2g19520)
            mRNA, complete cds
          Length = 1625

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1445 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1386

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1385 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1326

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1325 tccctgtgaccagcatgctggaagaa 1300

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>gb|AY059799.1| Arabidopsis thaliana putative WD-40 repeat protein, MSI4 (At2g19520;
            F3P11.12) mRNA, complete cds
          Length = 1776

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1469 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1410

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1409 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1350

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1349 tccctgtgaccagcatgctggaagaa 1324

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>gb|AY057655.1| Arabidopsis thaliana At2g19520/F3P11.12 mRNA, complete cds
          Length = 1810

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1493 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1434

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1433 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1374

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1373 tccctgtgaccagcatgctggaagaa 1348

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>gb|AF028711.1|AF028711 Arabidopsis thaliana WD-40 repeat protein MSI4 (MSI4) mRNA, complete
            cds
          Length = 1815

 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| |||||||||||||| ||  ||||||  |||
Sbjct: 1436 atcaagtcactcatccgccatatctgcaatgttccacctccaccagtagtctcacagtca 1377

                                                                        
Query: 431  tcagatacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatctta 490
            ||||| ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  || 
Sbjct: 1376 tcagaaacactgacaatagtccaagggtctgaagcattccagtggaaatcaacaactttg 1317

                                      
Query: 491  tccctatgacctgcatgttgaaagaa 516
            ||||| ||||| ||||| || |||||
Sbjct: 1316 tccctgtgaccagcatgctggaagaa 1291

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>ref|NM_119118.2| Arabidopsis thaliana MSI5 AT4G29730 (MSI5) mRNA, complete cds
          Length = 1750

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| || |||||||||||| | ||||||| || |
Sbjct: 1401 atcaagtcactcatccgccatatctgcaatgtaccacctccaccgatactctcacaatta 1342

                                        
Query: 431  tcagatacactcacaatggtccaagggt 458
            ||||| ||||| ||||| ||||||||||
Sbjct: 1341 tcagaaacactgacaatagtccaagggt 1314

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>gb|BT010610.1| Arabidopsis thaliana At4g29730 gene, complete cds
          Length = 1464

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| || |||||||||||| | ||||||| || |
Sbjct: 1385 atcaagtcactcatccgccatatctgcaatgtaccacctccaccgatactctcacaatta 1326

                                        
Query: 431  tcagatacactcacaatggtccaagggt 458
            ||||| ||||| ||||| ||||||||||
Sbjct: 1325 tcagaaacactgacaatagtccaagggt 1298

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>gb|AY830931.1| Pisum sativum FVE (FVE) mRNA, complete cds
          Length = 1750

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcggtngatcaaatc 378
            |||||| |||||  |||||| |||||  | |||||| |||||||| |  | || ||||||
Sbjct: 1520 gtgagatttgaatttctccaactctgccaaaacctcatcctctggtctatagagcaaatc 1461

                                                                        
Query: 379  actcatacgccatatctgcaaagttccacctccaccggtgctctcaccatcatcagatac 438
            |||||| |||||||||||||| ||||| |||||||| || || |||| ||||||||| ||
Sbjct: 1460 actcatgcgccatatctgcaatgttcctcctccaccagtactttcacaatcatcagacac 1401

                           
Query: 439  actcacaatggtcca 453
            ||| ||||| |||||
Sbjct: 1400 acttacaattgtcca 1386

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>dbj|AK176425.1| Arabidopsis thaliana mRNA for WD-40 repeat-like protein, complete
            cds, clone: RAFL24-17-D02
          Length = 1719

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcaaatcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatca 430
            ||||| |||||||| |||||||||||||| || |||||||||||| | ||||||| || |
Sbjct: 1401 atcaagtcactcatccgccatatctgcaatgtaccacctccaccgatactctcacaatta 1342

                                        
Query: 431  tcagatacactcacaatggtccaagggt 458
            ||||| ||||| ||||| ||||||||||
Sbjct: 1341 tcagaaacactgacaatagtccaagggt 1314

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>gb|AY849994.1| Arabidopsis thaliana ecotype Lz-0 FVE (FVE) gene, complete cds
          Length = 3250

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                        
Query: 394  ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
            |||||| |||||||||||||| ||  ||||||  |||||||| ||||| ||||| |||||
Sbjct: 3049 ctgcaatgttccacctccaccagtagtctcacagtcatcagaaacactgacaatagtcca 2990

                                                         
Query: 454  agggtctgatgagttccagtggaaatctacaatcttatccctatg 498
            ||||||||| |  |||||||||||||| ||||  || ||||||||
Sbjct: 2989 agggtctgaagcattccagtggaaatcaacaactttgtccctatg 2945

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>gb|AF498101.1| Arabidopsis thaliana MSI4 (FVE) gene, complete cds
          Length = 5865

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                        
Query: 394  ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
            |||||| |||||||||||||| ||  ||||||  |||||||| ||||| ||||| |||||
Sbjct: 5389 ctgcaatgttccacctccaccagtagtctcacagtcatcagaaacactgacaatagtcca 5330

                                            
Query: 454  agggtctgatgagttccagtggaaatctacaa 485
            ||||||||| |  |||||||||||||| ||||
Sbjct: 5329 agggtctgaagcattccagtggaaatcaacaa 5298

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>gb|AC005917.3| Arabidopsis thaliana chromosome 2 clone F3P11 map CIC06E08, complete
             sequence
          Length = 92822

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                         
Query: 394   ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
             |||||| |||||||||||||| ||  ||||||  |||||||| ||||| ||||| |||||
Sbjct: 53787 ctgcaatgttccacctccaccagtagtctcacagtcatcagaaacactgacaatagtcca 53728

                                             
Query: 454   agggtctgatgagttccagtggaaatctacaa 485
             ||||||||| |  |||||||||||||| ||||
Sbjct: 53727 agggtctgaagcattccagtggaaatcaacaa 53696

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>gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete sequence
          Length = 114143

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 320  tgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcggtngatcaaatca 379
            ||||| |||||  ||||||||||||  | |||||| |||||||| | || || |||||||
Sbjct: 8651 tgagatttgaatttctccagctctgccaaaacctcatcctctggtctgtagagcaaatca 8592

                                 
Query: 380  ctcatacgccatatctgcaaa 400
            ||||| |||||||||||||||
Sbjct: 8591 ctcatgcgccatatctgcaaa 8571

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>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete
             sequence
          Length = 145061

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 320   tgagacttgaaggtctccagctctgaaagaacctcgtcctctgggcggtngatcaaatca 379
             ||||| |||||  ||||||||||||  | |||||| |||||||| | || || |||||||
Sbjct: 61478 tgagatttgaatttctccagctctgccaaaacctcatcctctggtctgtagagcaaatca 61419

                                  
Query: 380   ctcatacgccatatctgcaaa 400
             ||||| |||||||||||||||
Sbjct: 61418 ctcatgcgccatatctgcaaa 61398

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>gb|BT012704.1| Lycopersicon esculentum clone 113579R, mRNA sequence
          Length = 1817

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 113/141 (80%)
 Strand = Plus / Minus

                                                                        
Query: 376  atcactcatacgccatatctgcaaagttccacctccaccggtgctctcaccatcatcaga 435
            |||| |||| ||||||||||| || || ||||||||||| || || || || ||||| ||
Sbjct: 1359 atcaatcattcgccatatctgtaatgtaccacctccaccagtactttctccgtcatctga 1300

                                                                        
Query: 436  tacactcacaatggtccaagggtctgatgagttccagtggaaatctacaatcttatccct 495
             ||||| ||||| ||||| || |||| |   ||||||||||| || || | |||||||||
Sbjct: 1299 cacactaacaatcgtccatggatctgctacattccagtggaagtcgaccaccttatccct 1240

                                 
Query: 496  atgacctgcatgttgaaagaa 516
            ||| || |||||  |||||||
Sbjct: 1239 atgtccagcatgacgaaagaa 1219

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>emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project)
          Length = 88011

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 394   ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
             |||||| || |||||||||||| | ||||||| || |||||| ||||| ||||| |||||
Sbjct: 69288 ctgcaatgtaccacctccaccgatactctcacaattatcagaaacactgacaatagtcca 69347

                  
Query: 454   agggt 458
             |||||
Sbjct: 69348 agggt 69352



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 371   atcaaatcactcatacgccatatctgca 398
             ||||| |||||||| |||||||||||||
Sbjct: 69170 atcaagtcactcatccgccatatctgca 69197

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>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
          Length = 200001

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 394   ctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcacaatggtcca 453
             |||||| || |||||||||||| | ||||||| || |||||| ||||| ||||| |||||
Sbjct: 94103 ctgcaatgtaccacctccaccgatactctcacaattatcagaaacactgacaatagtcca 94162

                  
Query: 454   agggt 458
             |||||
Sbjct: 94163 agggt 94167



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 371   atcaaatcactcatacgccatatctgca 398
             ||||| |||||||| |||||||||||||
Sbjct: 93985 atcaagtcactcatccgccatatctgca 94012

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>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete
             sequence
          Length = 132817

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                         
Query: 404   ccacctccaccggtgctctcaccatcatcagatacactcacaatggtccaagggtctgat 463
             ||||||||||| |||||  ||| ||||||||||||||| ||||| ||||| || || |||
Sbjct: 50287 ccacctccaccagtgcttgcacaatcatcagatacactaacaattgtccatggatcagat 50228

                                             
Query: 464   gagttccagtggaaatctacaatcttatccct 495
             |  ||||| || || || |||| |||||||||
Sbjct: 50227 gcattccaatgaaagtcaacaaccttatccct 50196

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>emb|AJ631221.1| Silene diclinis partial mRNA for putative WD repeat protein
          Length = 1374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1277 cgccatatctgcaatgttccacctcca 1251

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>emb|AJ631220.1| Silene diclinis partial mRNA for putative WD repeat protein
          Length = 1374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1277 cgccatatctgcaatgttccacctcca 1251

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>emb|AJ631219.1| Silene dioica partial mRNA for putative WD repeat protein
          Length = 1374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1277 cgccatatctgcaatgttccacctcca 1251

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>emb|AJ631218.1| Silene dioica partial mRNA for putative WD repeat protein
          Length = 1374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1277 cgccatatctgcaatgttccacctcca 1251

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>emb|Y18519.1|SLA18519 Silene latifolia mRNA for X1 protein
          Length = 1763

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1305 cgccatatctgcaatgttccacctcca 1279

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>emb|Y18517.1|SLA18517 Silene latifolia mRNA for Y1 protein
          Length = 1814

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 386  cgccatatctgcaaagttccacctcca 412
            |||||||||||||| ||||||||||||
Sbjct: 1375 cgccatatctgcaatgttccacctcca 1349

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>gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, complete sequence
          Length = 173382

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    acaatctcattacaaacaatg 44
             |||||||||||||||||||||
Sbjct: 67116 acaatctcattacaaacaatg 67096

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>gb|AC129178.4| Mus musculus BAC clone RP23-217G18 from chromosome 16, complete
             sequence
          Length = 185769

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 320   tgagacttgaaggtctccagctctg 344
             |||| ||||||||||||||||||||
Sbjct: 74382 tgaggcttgaaggtctccagctctg 74358

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>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence
          Length = 208907

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     tacaaaatgttcccaataggc 92
              |||||||||||||||||||||
Sbjct: 191929 tacaaaatgttcccaataggc 191949

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>gb|AC164631.5| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 237469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     tacaaaatgttcccaataggc 92
              |||||||||||||||||||||
Sbjct: 205022 tacaaaatgttcccaataggc 205002

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>gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 section 5 of 16 of the
              complete genome
          Length = 291847

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     acaatctcattacaaacaat 43
              ||||||||||||||||||||
Sbjct: 288735 acaatctcattacaaacaat 288754



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     acaatctcattacaaacaat 43
              ||||||||||||||||||||
Sbjct: 288720 acaatctcattacaaacaat 288739

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 3223473 acaatctcattacaaacaat 3223492



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 3223458 acaatctcattacaaacaat 3223477

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>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence
          Length = 232473

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    acttgaaggtctccagctct 343
              ||||||||||||||||||||
Sbjct: 101511 acttgaaggtctccagctct 101530

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>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   agtctggctacagaaataaa 124
             ||||||||||||||||||||
Sbjct: 39772 agtctggctacagaaataaa 39753

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>gb|AC133523.3| Mus musculus BAC clone RP23-34E20 from 19, complete sequence
          Length = 250866

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    catatctgcaaagttccacc 408
              ||||||||||||||||||||
Sbjct: 151978 catatctgcaaagttccacc 151997

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550304 acaatctcattacaaacaat 1550285



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550289 acaatctcattacaaacaat 1550270



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550274 acaatctcattacaaacaat 1550255



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550259 acaatctcattacaaacaat 1550240



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550244 acaatctcattacaaacaat 1550225



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      acaatctcattacaaacaat 43
               ||||||||||||||||||||
Sbjct: 1550229 acaatctcattacaaacaat 1550210

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>emb|AJ414147.1| Yersinia pestis strain CO92 complete genome; segment 7/20
          Length = 199050

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    acaatctcattacaaacaat 43
             ||||||||||||||||||||
Sbjct: 95249 acaatctcattacaaacaat 95230



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    acaatctcattacaaacaat 43
             ||||||||||||||||||||
Sbjct: 95234 acaatctcattacaaacaat 95215

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>gb|AY096002.1| Mus musculus NADH dehydrogenase:ubiquinone Fe-S protein 8 (Ndufs8)
            gene, complete cds
          Length = 9143

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  catatctgcaaagttccacc 408
            ||||||||||||||||||||
Sbjct: 1258 catatctgcaaagttccacc 1239

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>gb|AC011402.9| Homo sapiens chromosome 5 clone CTB-38B5, complete sequence
          Length = 70834

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   aaatctacaatcttatccct 495
             ||||||||||||||||||||
Sbjct: 24153 aaatctacaatcttatccct 24172

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>gb|AC011370.4| Homo sapiens chromosome 5 clone CTB-107A22, complete sequence
          Length = 117145

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 476  aaatctacaatcttatccct 495
            ||||||||||||||||||||
Sbjct: 6334 aaatctacaatcttatccct 6353

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>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
             sequence
          Length = 180092

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   gctacagaaataaagctccg 130
             ||||||||||||||||||||
Sbjct: 96704 gctacagaaataaagctccg 96723

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>gb|AC079444.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-395k5, complete
             sequence
          Length = 171451

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   acttgaaggtctccagctct 343
             ||||||||||||||||||||
Sbjct: 10415 acttgaaggtctccagctct 10396

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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 20      aaacacaatctcattacaaa 39
               ||||||||||||||||||||
Sbjct: 1518000 aaacacaatctcattacaaa 1517981

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>emb|AL807828.14| Mouse DNA sequence from clone RP23-184N11 on chromosome 4, complete
              sequence
          Length = 174593

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    acttgaaggtctccagctct 343
              ||||||||||||||||||||
Sbjct: 113873 acttgaaggtctccagctct 113892

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>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   agtctggctacagaaataaa 124
             ||||||||||||||||||||
Sbjct: 10523 agtctggctacagaaataaa 10504

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>gb|DQ250682.1| Ipomoea nil FVE mRNA, partial cds
          Length = 528

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 386 cgccatatctgcaaagttccacctccaccggtgctctcaccatcatcagatacactcaca 445
           ||||||||||| |  || ||||||||||| |||   ||||  |||||||||||||| |||
Sbjct: 252 cgccatatctgtagtgtaccacctccacctgtggagtcacagtcatcagatacacttaca 193

                   
Query: 446 atggtcca 453
           || |||||
Sbjct: 192 attgtcca 185

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>gb|AC090503.12| Homo sapiens 12q BAC RP11-314D7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 221074

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    aagcatacaacaagttaaat 161
              ||||||||||||||||||||
Sbjct: 138548 aagcatacaacaagttaaat 138529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,137,287
Number of Sequences: 3902068
Number of extensions: 4137287
Number of successful extensions: 84684
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84529
Number of HSP's gapped (non-prelim): 155
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result