ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal14j15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 908 bits (458), Expect = 0.0 Identities = 504/512 (98%), Gaps = 6/512 (1%) Strand = Plus / Minus Query: 3 taacaaaacatgacccagcaatcgcttggntgcgatgcggncttag-gtaggtaaaacat 61 |||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||| Sbjct: 1669 taacaaaacatg-cccagcaatcgcttggatgcgatgcggacttagtgtaggtaaaacat 1611 Query: 62 cagnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgtcgctcctt 120 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1610 cag-atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctcctt 1552 Query: 121 gccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgggcaaagt 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1551 gccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggcaaagt 1492 Query: 180 accttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgt-gtatggag 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1491 accttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgttgtatggag 1432 Query: 239 aattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1431 aattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagc 1372 Query: 299 tgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1371 tgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggac 1312 Query: 359 gagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcac 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 gagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcac 1252 Query: 419 gggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgac 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 gggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgac 1192 Query: 479 ccacttgcgcacctcatcgtcgtacacccgag 510 |||||||||||||||||||||||||||||||| Sbjct: 1191 ccacttgcgcacctcatcgtcgtacacccgag 1160
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 714 bits (360), Expect = 0.0 Identities = 479/514 (93%), Gaps = 9/514 (1%) Strand = Plus / Minus Query: 3 taacaaaacatgacccagcaatcgcttggntgcgatgcggn-cttaggta-----ggtaa 56 |||||||||||| |||||||||||||||| |||||||||| |||||||| | ||| Sbjct: 740 taacaaaacatg-cccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataa 682 Query: 57 aacatcagnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgct 116 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 681 aacatcag-atattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcact 624 Query: 117 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaa 176 ||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||| Sbjct: 623 cctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaa 564 Query: 177 agtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 236 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 agtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 504 Query: 237 agaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccaga 296 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 503 agaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacccaga 444 Query: 297 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 384 Query: 357 acgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtc 416 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 383 acgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaaggtc 324 Query: 417 acgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccg 476 || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 323 actggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtc 264 Query: 477 acccacttgcgcacctcatcgtcgtacacccgag 510 ||||||||||||||||| |||||||||||||||| Sbjct: 263 acccacttgcgcacctcgtcgtcgtacacccgag 230
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 714 bits (360), Expect = 0.0 Identities = 479/514 (93%), Gaps = 9/514 (1%) Strand = Plus / Minus Query: 3 taacaaaacatgacccagcaatcgcttggntgcgatgcggn-cttaggta-----ggtaa 56 |||||||||||| |||||||||||||||| |||||||||| |||||||| | ||| Sbjct: 1590 taacaaaacatg-cccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataa 1532 Query: 57 aacatcagnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgct 116 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1531 aacatcag-atattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcact 1474 Query: 117 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaa 176 ||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||| Sbjct: 1473 cctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaa 1414 Query: 177 agtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 236 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 agtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 1354 Query: 237 agaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccaga 296 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1353 agaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacccaga 1294 Query: 297 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 1234 Query: 357 acgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtc 416 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 1233 acgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaaggtc 1174 Query: 417 acgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccg 476 || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 1173 actggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtc 1114 Query: 477 acccacttgcgcacctcatcgtcgtacacccgag 510 ||||||||||||||||| |||||||||||||||| Sbjct: 1113 acccacttgcgcacctcgtcgtcgtacacccgag 1080
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 620 bits (313), Expect = e-174 Identities = 313/313 (100%) Strand = Plus / Minus Query: 198 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 258 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 318 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 378 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 438 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 498 tcgtacacccgag 510 ||||||||||||| Sbjct: 7055 tcgtacacccgag 7043 Score = 353 bits (178), Expect = 4e-94 Identities = 196/200 (98%), Gaps = 2/200 (1%) Strand = Plus / Minus Query: 3 taacaaaacatgacccagcaatcgcttggntgcgatgcggncttaggtaggtaaaacatc 62 |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 7720 taacaaaacatg-cccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 7662 Query: 63 agnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7661 ag-atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 7603 Query: 123 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7602 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 7543 Query: 183 ttgctgtgctcctttacctc 202 |||||||||||||||||||| Sbjct: 7542 ttgctgtgctcctttacctc 7523 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 324 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 383 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 384 ttctcgactgtcatctttggctgctcgaa 412 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 473 gccgacccacttgcgcacctcatcgtcgtacacccg 508 ||||||||||||||||||||| |||||||||||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccg 3777
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 581 bits (293), Expect = e-163 Identities = 415/455 (91%), Gaps = 2/455 (0%) Strand = Plus / Minus Query: 56 aaacatcagnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 115 ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1543 aaacatcagaataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 1484 Query: 116 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 175 |||| || ||||||||| |||||||||||| ||||||| |||||||||||||| |||| Sbjct: 1483 tcctcgcggttgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggca 1424 Query: 176 aagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatg 235 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1423 aagtgccttgttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atg 1366 Query: 236 gagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccag 295 ||| | ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct: 1365 aagagtgttctaaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccag 1306 Query: 296 agctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctg 355 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1305 agctgcctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctg 1246 Query: 356 gacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggt 415 ||| |||||||| |||||||| |||| |||||| || |||||||| |||||||||||||| Sbjct: 1245 gacaagcatgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggt 1186 Query: 416 cacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagcc 475 ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct: 1185 gacgggtccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacga 1126 Query: 476 gacccacttgcgcacctcatcgtcgtacacccgag 510 |||||||||||||||||| ||||||||||||||| Sbjct: 1125 cacccacttgcgcacctcaacgtcgtacacccgag 1091
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 521 bits (263), Expect = e-145 Identities = 263/263 (100%) Strand = Plus / Minus Query: 248 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 308 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 368 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 428 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 488 cacctcatcgtcgtacacccgag 510 ||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgag 905 Score = 349 bits (176), Expect = 6e-93 Identities = 194/198 (97%), Gaps = 2/198 (1%) Strand = Plus / Minus Query: 3 taacaaaacatgacccagcaatcgcttggntgcgatgcggncttaggtaggtaaaacatc 62 |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 1360 taacaaaacatg-cccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatc 1302 Query: 63 agnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1301 ag-atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 1243 Query: 123 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1242 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 1183 Query: 183 ttgctgtgctcctttacc 200 |||||||||||||||||| Sbjct: 1182 ttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 478 bits (241), Expect = e-132 Identities = 274/285 (96%) Strand = Plus / Minus Query: 226 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 285 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 286 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 346 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 406 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 465 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 466 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgag 510 |||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgag 24
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 347 bits (175), Expect = 2e-92 Identities = 241/263 (91%) Strand = Plus / Minus Query: 248 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 307 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 308 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 367 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 368 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 427 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 428 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 487 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 488 cacctcatcgtcgtacacccgag 510 |||||| |||||||||||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgag 1101 Score = 180 bits (91), Expect = 3e-42 Identities = 131/145 (90%) Strand = Plus / Minus Query: 56 aaacatcagnatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 115 |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1505 aaacatcanaataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgc 1446 Query: 116 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggca 175 |||| || ||||||||| |||||||||||| ||||||| |||||||||||||| |||| Sbjct: 1445 tcctcgcggttgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggca 1386 Query: 176 aagtaccttgctgtgctcctttacc 200 |||| ||||| |||||||||||||| Sbjct: 1385 aagtgccttgttgtgctcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgta 1055
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgta 1093
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgta 1092
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 901 acccacttgcgcacctcgtcgtcgta 876
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgta 1097
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 244 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 303 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 304 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 363 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 364 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 423 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 424 cgtcccgcgagttcaccagcctcttgccaatgttctc 460 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 99 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 158 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 159 accttccggcacggg 173 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgta 108564 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 432 gagttcaccagcctcttgccaatgttctc 460 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 244 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 303 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 304 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 363 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 364 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 423 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 424 cgtcccgcgagttcaccagcctcttgccaatgttctc 460 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 99 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 158 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 159 accttccggcacggg 173 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgta 30441 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 432 gagttcaccagcctcttgccaatgttctc 460 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgta 1061
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 9e-24 Identities = 174/212 (82%) Strand = Plus / Minus Query: 249 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 308 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 309 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 368 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 369 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 428 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 429 cgcgagttcaccagcctcttgccaatgttctc 460 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgta 1056
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 244 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 303 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 304 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 363 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 364 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 423 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 424 cgtcccgcgagttcaccagcctcttgccaatgttctc 460 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 99 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 158 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 159 accttccggcacggg 173 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgta 28303703 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 432 gagttcaccagcctcttgccaatgttctc 460 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 244 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 303 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 304 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 363 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 364 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 423 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 424 cgtcccgcgagttcaccagcctcttgccaatgttctc 460 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 99 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 158 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 159 accttccggcacggg 173 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgta 28286152 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 432 gagttcaccagcctcttgccaatgttctc 460 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 9e-24 Identities = 174/212 (82%) Strand = Plus / Minus Query: 249 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 308 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 309 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 368 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 369 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 428 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 429 cgcgagttcaccagcctcttgccaatgttctc 460 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgta 1091
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 245 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 304 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 305 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 364 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 365 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 424 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 425 gtcccgcgagttcaccagcctcttgcc 451 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 91 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 150 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 151 tcggtgcaaccttc 164 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 335 acccacttgcgcacctcgtcgtcgta 310
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 247 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 306 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 307 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 366 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 367 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 426 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 427 cccgcgagttcaccagcctcttgccaatgttctc 460 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 9e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 141 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 197 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 198 acctcctcct 207 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 477 acccacttgcgcacctcatcgtcgta 502 ||||||||||||||||| |||||||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgta 1104
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 87 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 146 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 147 ttggtcggtgcaaccttccggcacgggca 175 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 9e-24 Identities = 165/200 (82%) Strand = Plus / Minus Query: 252 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 311 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 312 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 371 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 372 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 431 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 432 gagttcaccagcctcttgcc 451 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 91 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 150 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 151 tcggtgcaaccttc 164 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 105 bits (53), Expect = 1e-19 Identities = 152/185 (82%) Strand = Plus / Minus Query: 324 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 383 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 384 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 443 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 444 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 503 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 504 acccg 508 ||||| Sbjct: 1062 acccg 1058
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 6e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 245 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 304 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 305 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 364 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 365 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 424 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 425 gtcccgcgagttcaccagcctctt 448 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 91 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 150 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 151 tcggtgcaaccttc 164 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 3e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 252 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 311 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 312 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 371 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 372 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 431 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 432 gagttcaccagcctctt 448 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 91 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 150 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 151 tcggtgcaaccttc 164 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 253 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 312 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 313 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 372 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 373 actctagcagcttctcgactgtcatctttggctgctcgaa 412 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 253 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 312 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 313 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 372 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 373 actctagcagcttctcgactgtcatctttggctgctcgaa 412 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 253 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 312 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 313 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 372 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 373 actctagcagcttctcgactgtcatctttggctgctcgaa 412 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 324 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 383 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 384 ttctcgactgtcatctttggctgctcgaa 412 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 473 gccgacccacttgcgcacctcatcgtcgtacacccg 508 ||||||||||||||||||||| |||||||||||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccg 1208
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 8e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 270 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 329 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 330 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 385 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 81 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 140 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 141 ggcattttggtcggtgcaaccttccggcacgggca 175 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 281 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 340 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 341 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 400 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 401 tggctgctcgaa 412 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Minus Query: 273 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 322 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 catcacccagagctgcctggct 307 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 atgcagcaagagatggtgggt 228 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 324 agctgcacacgcttgacattgtcctgctc 352 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cctttacctcctcctatgca 212 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cctttacctcctcctatgca 212 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 6.9 Identities = 68/84 (80%) Strand = Plus / Minus Query: 282 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 341 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 342 ttgtcctgctcctggacgagcatg 365 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cctttacctcctcctatgca 212 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gtcagcaagctgcacacgct 336 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ttgacattgtcctgctcctg 355 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ggtgtaaaggcagctgccgtcgtcgctc 117 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cctttacctcctcctatgca 212 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tggcatgcttaaaaggtgta 95 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ttgacattgtcctgctcctg 355 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 catcacccagagctgcctggctca 309 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 cttgctgtgctcctttacctcctc 205 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cctttacctcctcctatgca 212 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,262,873 Number of Sequences: 3902068 Number of extensions: 3262873 Number of successful extensions: 59858 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59617 Number of HSP's gapped (non-prelim): 190 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
