ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal14j05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1912 Score = 244 bits (123), Expect = 3e-61 Identities = 234/272 (86%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct: 1670 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 1611 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| ||| | ||||||||||| ||| ||||| || Sbjct: 1610 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 1551 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 1550 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 1491 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 1490 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 1431 Query: 365 cgcgacgtgcgaccagtacctctccatgagct 396 | |||||||||||| ||||| |||| ||||| Sbjct: 1430 catgacgtgcgaccaatacctgtccaagagct 1399 Score = 46.1 bits (23), Expect = 0.12 Identities = 52/62 (83%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| | |||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 1354 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1295 Query: 501 tt 502 || Sbjct: 1294 tt 1293
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 238 bits (120), Expect = 2e-59 Identities = 225/261 (86%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct: 33336982 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33336923 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| ||| | ||||||||||| ||| ||||| || Sbjct: 33336922 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33336863 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 33336862 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33336803 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 33336802 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33336743 Query: 365 cgcgacgtgcgaccagtacct 385 | |||||||||||| ||||| Sbjct: 33336742 catgacgtgcgaccaatacct 33336722 Score = 167 bits (84), Expect = 5e-38 Identities = 216/261 (82%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 33349831 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33349772 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 33349771 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33349712 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 33349711 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33349652 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 33349651 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33349592 Query: 365 cgcgacgtgcgaccagtacct 385 | ||| ||||||| |||||| Sbjct: 33349591 catgacatgcgacctgtacct 33349571 Score = 163 bits (82), Expect = 7e-37 Identities = 199/239 (83%) Strand = Plus / Minus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 33358008 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33357949 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 33357948 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33357889 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 33357888 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33357829 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 385 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 33357828 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33357770 Score = 111 bits (56), Expect = 2e-21 Identities = 213/264 (80%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| |||||||| || |||||||| |||||| | || ||||||||| ||||||| Sbjct: 33343595 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33343536 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| | |||||||||||| | ||| | ||||||||||||||| || || | Sbjct: 33343535 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33343476 Query: 245 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 301 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 33343475 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33343416 Query: 302 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 361 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 33343415 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33343356 Query: 362 ctgcgcgacgtgcgaccagtacct 385 |||| ||| || ||||||||||| Sbjct: 33343355 ctgcatgacatgtgaccagtacct 33343332 Score = 95.6 bits (48), Expect = 1e-16 Identities = 64/70 (91%) Strand = Plus / Minus Query: 135 gcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgagccagcgggac 194 |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 33383523 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33383464 Query: 195 ncggcgaagc 204 ||||||||| Sbjct: 33383463 gcggcgaagc 33383454 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 33349392 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33349333 Query: 501 tt 502 || Sbjct: 33349332 tt 33349331 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| |||||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 33343165 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33343106 Query: 501 tt 502 || Sbjct: 33343105 tt 33343104 Score = 46.1 bits (23), Expect = 0.12 Identities = 52/62 (83%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| | |||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 33336528 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33336469 Query: 501 tt 502 || Sbjct: 33336468 tt 33336467 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 381 tacctctccatgagcttgtctttggttggagt 412 |||||||||||||||| |||||||| ||||| Sbjct: 33343225 tacctctccatgagctgatctttggtaggagt 33343194
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 238 bits (120), Expect = 2e-59 Identities = 225/261 (86%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct: 93498 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 93439 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| ||| | ||||||||||| ||| ||||| || Sbjct: 93438 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 93379 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 93378 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 93319 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 93318 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 93259 Query: 365 cgcgacgtgcgaccagtacct 385 | |||||||||||| ||||| Sbjct: 93258 catgacgtgcgaccaatacct 93238 Score = 167 bits (84), Expect = 5e-38 Identities = 216/261 (82%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 106347 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 106288 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 106287 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 106228 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 106227 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 106168 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 106167 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 106108 Query: 365 cgcgacgtgcgaccagtacct 385 | ||| ||||||| |||||| Sbjct: 106107 catgacatgcgacctgtacct 106087 Score = 163 bits (82), Expect = 7e-37 Identities = 199/239 (83%) Strand = Plus / Minus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 114524 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 114465 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 114464 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 114405 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 114404 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 114345 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 385 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 114344 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 114286 Score = 111 bits (56), Expect = 2e-21 Identities = 213/264 (80%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| |||||||| || |||||||| |||||| | || ||||||||| ||||||| Sbjct: 100111 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 100052 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| | |||||||||||| | ||| | ||||||||||||||| || || | Sbjct: 100051 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 99992 Query: 245 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 301 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 99991 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 99932 Query: 302 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 361 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 99931 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 99872 Query: 362 ctgcgcgacgtgcgaccagtacct 385 |||| ||| || ||||||||||| Sbjct: 99871 ctgcatgacatgtgaccagtacct 99848 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 105908 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 105849 Query: 501 tt 502 || Sbjct: 105848 tt 105847 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| |||||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 99681 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 99622 Query: 501 tt 502 || Sbjct: 99621 tt 99620 Score = 46.1 bits (23), Expect = 0.12 Identities = 52/62 (83%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| | |||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 93044 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 92985 Query: 501 tt 502 || Sbjct: 92984 tt 92983 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 381 tacctctccatgagcttgtctttggttggagt 412 |||||||||||||||| |||||||| ||||| Sbjct: 99741 tacctctccatgagctgatctttggtaggagt 99710
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 238 bits (120), Expect = 2e-59 Identities = 225/261 (86%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||| Sbjct: 33427492 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33427433 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| ||| | ||||||||||| ||| ||||| || Sbjct: 33427432 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33427373 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 |||||| || | |||||||||||||| || ||||| |||||||| || |||||||| || Sbjct: 33427372 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33427313 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || |||||||||| ||||||| Sbjct: 33427312 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33427253 Query: 365 cgcgacgtgcgaccagtacct 385 | |||||||||||| ||||| Sbjct: 33427252 catgacgtgcgaccaatacct 33427232 Score = 167 bits (84), Expect = 5e-38 Identities = 216/261 (82%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 33440341 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33440282 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 33440281 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33440222 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 33440221 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33440162 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 33440161 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33440102 Query: 365 cgcgacgtgcgaccagtacct 385 | ||| ||||||| |||||| Sbjct: 33440101 catgacatgcgacctgtacct 33440081 Score = 163 bits (82), Expect = 7e-37 Identities = 199/239 (83%) Strand = Plus / Minus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 33448518 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33448459 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 33448458 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33448399 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 33448398 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33448339 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 385 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 33448338 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33448280 Score = 111 bits (56), Expect = 2e-21 Identities = 213/264 (80%), Gaps = 3/264 (1%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| |||||||| || |||||||| |||||| | || ||||||||| ||||||| Sbjct: 33434105 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33434046 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| | |||||||||||| | ||| | ||||||||||||||| || || | Sbjct: 33434045 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33433986 Query: 245 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 301 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 33433985 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33433926 Query: 302 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 361 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 33433925 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33433866 Query: 362 ctgcgcgacgtgcgaccagtacct 385 |||| ||| || ||||||||||| Sbjct: 33433865 ctgcatgacatgtgaccagtacct 33433842 Score = 95.6 bits (48), Expect = 1e-16 Identities = 64/70 (91%) Strand = Plus / Minus Query: 135 gcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgagccagcgggac 194 |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 33474033 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33473974 Query: 195 ncggcgaagc 204 ||||||||| Sbjct: 33473973 gcggcgaagc 33473964 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 33439902 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33439843 Query: 501 tt 502 || Sbjct: 33439842 tt 33439841 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| |||||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 33433675 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33433616 Query: 501 tt 502 || Sbjct: 33433615 tt 33433614 Score = 46.1 bits (23), Expect = 0.12 Identities = 52/62 (83%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| | |||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 33427038 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33426979 Query: 501 tt 502 || Sbjct: 33426978 tt 33426977 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 381 tacctctccatgagcttgtctttggttggagt 412 |||||||||||||||| |||||||| ||||| Sbjct: 33433735 tacctctccatgagctgatctttggtaggagt 33433704
>ref|XM_470017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1668 Score = 180 bits (91), Expect = 3e-42 Identities = 238/288 (82%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 1668 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1609 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 1608 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1549 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 1548 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1489 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 1488 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1429 Query: 365 cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 412 | ||| ||||||| ||||||||||| || || |||||||| ||||| Sbjct: 1428 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1381 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 1352 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1293 Query: 501 tt 502 || Sbjct: 1292 tt 1291
>ref|XM_470014.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 180 bits (91), Expect = 3e-42 Identities = 238/288 (82%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 1659 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1600 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 1599 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1540 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 1539 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1480 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 1479 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1420 Query: 365 cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 412 | ||| ||||||| ||||||||||| || || |||||||| ||||| Sbjct: 1419 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1372 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 1343 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1284 Query: 501 tt 502 || Sbjct: 1283 tt 1282
>ref|XM_470018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 168 bits (85), Expect = 1e-38 Identities = 202/242 (83%) Strand = Plus / Minus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 1556 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1497 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 1496 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1437 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 1436 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1377 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 386 |||| |||||| || | |||||||||| |||||||| ||| ||||||||||||||| Sbjct: 1376 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1317 Query: 387 tc 388 || Sbjct: 1316 tc 1315
>ref|XM_470015.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 168 bits (85), Expect = 1e-38 Identities = 202/242 (83%) Strand = Plus / Minus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 1544 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1485 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 1484 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1425 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 1424 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1365 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 386 |||| |||||| || | |||||||||| |||||||| ||| ||||||||||||||| Sbjct: 1364 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1305 Query: 387 tc 388 || Sbjct: 1304 tc 1303
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 167 bits (84), Expect = 5e-38 Identities = 216/261 (82%) Strand = Plus / Plus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| ||||||||||| |||||||| |||||| |||| || |||||||| ||||| Sbjct: 148280 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 148339 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| |||||||||||||||| || | |||| ||||||||| | || || Sbjct: 148340 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 148399 Query: 245 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 304 ||||| |||| ||||||||||||| || ||||| ||||||| || |||||||| || Sbjct: 148400 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 148459 Query: 305 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 364 ||||||||| ||||||||||| ||||| ||||||| || | |||||||||| ||||||| Sbjct: 148460 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 148519 Query: 365 cgcgacgtgcgaccagtacct 385 | ||| ||||||| |||||| Sbjct: 148520 catgacatgcgacctgtacct 148540 Score = 163 bits (82), Expect = 7e-37 Identities = 199/239 (83%) Strand = Plus / Plus Query: 147 tcctggaaatagaagttcttntcgatgaagctggcgagccagcgggacncggcgaagcac 206 |||| |||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| Sbjct: 140103 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 140162 Query: 207 agcaccgccaatgtcacgacggcggctctntgcacgaccgacgtcactagtgtccccttg 266 ||||||||| | ||||||||||||||| || || ||||||| || | ||||||||| Sbjct: 140163 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 140222 Query: 267 gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 326 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct: 140223 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 140282 Query: 327 ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 385 |||| |||||| || | |||||||||| |||||||| ||| |||||||||||||| Sbjct: 140283 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 140341 Score = 95.6 bits (48), Expect = 1e-16 Identities = 64/70 (91%) Strand = Plus / Plus Query: 135 gcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgagccagcgggac 194 |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 114588 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 114647 Query: 195 ncggcgaagc 204 ||||||||| Sbjct: 114648 gcggcgaagc 114657 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||| |||| ||| |||| ||||||||||||| | ||||||| ||| |||||| Sbjct: 148719 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 148778 Query: 501 tt 502 || Sbjct: 148779 tt 148780
>gb|AY109924.1| Zea mays CL64795_1 mRNA sequence Length = 748 Score = 147 bits (74), Expect = 4e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 261 cccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctcc 320 ||||| ||||| |||||||| |||||||| || ||||| || |||||||||||| |||| Sbjct: 404 cccttagcgacggcaaggaacccgacgacggcgaccgaggccacctgcagggcagcctcg 345 Query: 321 agcgctttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccag 380 ||||| ||||||||||| ||||||| | ||||||||||||||||| | ||||||||||| Sbjct: 344 agcgccttcatggtcttgagcgccgcgttgcagctcctgcactgcaccacgtgcgaccaa 285 Query: 381 tacctctccatgagcttgtctttggt 406 |||||||||||||||| ||| ||||| Sbjct: 284 tacctctccatgagctggtccttggt 259 Score = 85.7 bits (43), Expect = 1e-13 Identities = 88/102 (86%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||| Sbjct: 224 gcccagccgacctggttcttgcagaattttctgaaccagttcctgaaggcgaccaccatg 165 Query: 501 tttgtccgacgacgtcggcacgtacacggctttctgccagtt 542 |||||||||||||||||||||| ||| |||||||||| Sbjct: 164 -gcgtccgacgacgtcggcacgtaccaagctctctgccagtt 124 Score = 46.1 bits (23), Expect = 0.12 Identities = 70/87 (80%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 |||||||||||| |||| ||| | || || |||||| || | | ||||||| |||| || Sbjct: 540 tcacttgtaggcgtggatgtagncttgaaagtagaagntcatctggatgaagttggcaag 481 Query: 185 ccagcgggacncggcgaagcacagcac 211 ||| ||||| | |||||||||||||| Sbjct: 480 ccaacgggaggcagcgaagcacagcac 454
>ref|XM_470013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 141 bits (71), Expect = 3e-30 Identities = 237/291 (81%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 125 tcacttgtaggcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgag 184 ||||||||| |||||||| || |||||||| |||||| | || ||||||||| ||||||| Sbjct: 1584 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 1525 Query: 185 ccagcgggacncggcgaagcacagcaccgccaatgtcacgacggcggctctntgcacgac 244 ||||||||| | |||||||||||| | ||| | ||||||||||||||| || || | Sbjct: 1524 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 1465 Query: 245 cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 301 |||||| || | || ||||||||| || | || ||||| |||||||| || |||||||| Sbjct: 1464 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 1405 Query: 302 gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 361 |||||||| || ||||||| ||| |||| |||||| || | ||||||||| |||| Sbjct: 1404 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 1345 Query: 362 ctgcgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 412 |||| ||| || |||||||||||||||||||||| |||||||| ||||| Sbjct: 1344 ctgcatgacatgtgaccagtacctctccatgagctgatctttggtaggagt 1294 Score = 54.0 bits (27), Expect = 5e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 441 gcccagccgacctgactcttgcagtgctttctgaaccagntcctgaaggcgatcaccatg 500 |||||||| |||||| |||||||| ||||||||||||| | ||||||| ||| | |||| Sbjct: 1265 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1206 Query: 501 tt 502 || Sbjct: 1205 tt 1204
>ref|XM_470021.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1536 Score = 95.6 bits (48), Expect = 1e-16 Identities = 64/70 (91%) Strand = Plus / Minus Query: 135 gcatggacgtaatcctggaaatagaagttcttntcgatgaagctggcgagccagcgggac 194 |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 1246 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 1187 Query: 195 ncggcgaagc 204 ||||||||| Sbjct: 1186 gcggcgaagc 1177
>emb|BX950251.1| Gallus gallus finished cDNA, clone ChEST706m10 Length = 1244 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 342 gccgtgctgcagctcctgcactgcgc 367 |||||||||||||||| ||||||||| Sbjct: 77 gccgtgctgcagctccagcactgcgc 102
>gb|AY023913.1| Oryza sativa microsatellite MRG6238 containing (ATAG)X20, closest to marker R707, genomic sequence Length = 280 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcacttgtaggcatggacgtaatcctgga 153 ||||||||| ||||||||||| ||||||| Sbjct: 252 tcacttgtaagcatggacgtagtcctgga 280
>gb|AY023910.1| Oryza sativa microsatellite MRG6235 containing (ATAG)X17, closest to marker R707, genomic sequence Length = 268 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 tcacttgtaggcatggacgtaatcctgga 153 ||||||||| ||||||||||| ||||||| Sbjct: 240 tcacttgtaagcatggacgtagtcctgga 268
>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence Length = 148533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 cactgcgcgacgtgcgaccag 380 ||||||||||||||||||||| Sbjct: 31132 cactgcgcgacgtgcgaccag 31152
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 cactgcgcgacgtgcgaccag 380 ||||||||||||||||||||| Sbjct: 880110 cactgcgcgacgtgcgaccag 880090
>ref|XM_946581.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.4980) partial mRNA Length = 840 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 cactgcgcgacgtgcgaccag 380 ||||||||||||||||||||| Sbjct: 278 cactgcgcgacgtgcgaccag 298
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cttcagcgccgtgctgcagct 355 ||||||||||||||||||||| Sbjct: 1957778 cttcagcgccgtgctgcagct 1957798
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 tcgatgaagctggcgagccag 188 ||||||||||||||||||||| Sbjct: 1293006 tcgatgaagctggcgagccag 1293026
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 acctgcagggcaacctccagc 323 ||||||||||||||||||||| Sbjct: 560925 acctgcagggcaacctccagc 560905
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 catgtacactttctaaagct 70 |||||||||||||||||||| Sbjct: 1594497 catgtacactttctaaagct 1594516
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 217634 ctccatgagcttttctttggttgg 217611
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 249661 ctccatgagcttttctttggttgg 249638
>ref|XM_960207.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial mRNA Length = 2736 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 158 gaagttcttntcgatgaagctgg 180 ||||||||| ||||||||||||| Sbjct: 2029 gaagttcttctcgatgaagctgg 2051
>ref|XM_330635.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial mRNA Length = 2736 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 158 gaagttcttntcgatgaagctgg 180 ||||||||| ||||||||||||| Sbjct: 2029 gaagttcttctcgatgaagctgg 2051
>gb|AE006492.1| Streptococcus pyogenes M1 GAS, section 21 of 167 of the complete genome Length = 10643 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 262 ctccatgagcttttctttggttgg 239
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 217460 ctccatgagcttttctttggttgg 217437
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 225193 ctccatgagcttttctttggttgg 225170
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 221849 ctccatgagcttttctttggttgg 221826
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 224244 ctccatgagcttttctttggttgg 224221
>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence Length = 227648 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tgtgcttcatgtacactttc 63 |||||||||||||||||||| Sbjct: 66340 tgtgcttcatgtacactttc 66321
>ref|XM_846527.1| PREDICTED: Canis familiaris hypothetical protein LOC609286 (LOC609286), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 actcttgcagtgctttctga 474 |||||||||||||||||||| Sbjct: 229 actcttgcagtgctttctga 210
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 221157 ctccatgagcttttctttggttgg 221134
>gb|DQ366728.1| Uncultured Prochlorococcus marinus clone HF10-88H10 genomic sequence Length = 42262 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 catgtacactttctaaagct 70 |||||||||||||||||||| Sbjct: 16869 catgtacactttctaaagct 16850
>emb|X05630.1|RCPETG Rhodopseudomonas capsulata petABC operon Length = 4007 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gcgaccgcaaggaaaccgac 286 |||||||||||||||||||| Sbjct: 2952 gcgaccgcaaggaaaccgac 2971
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence Length = 173513 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tctttggttggagtctctgg 418 |||||||||||||||||||| Sbjct: 23547 tctttggttggagtctctgg 23566
>gb|AE009971.1| Streptococcus pyogenes strain MGAS8232, section 19 of 173 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 8707 ctccatgagcttttctttggttgg 8684
>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence Length = 179032 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ttgtctttggttggagtctc 415 |||||||||||||||||||| Sbjct: 33207 ttgtctttggttggagtctc 33188
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 208713 ctccatgagcttttctttggttgg 208690
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ctccatgagcttgtctttggttgg 409 |||||||||||| ||||||||||| Sbjct: 202623 ctccatgagcttttctttggttgg 202600
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gcgacctgcagggcaacctc 319 |||||||||||||||||||| Sbjct: 770359 gcgacctgcagggcaacctc 770340
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tctttggttggagtctctgg 418 |||||||||||||||||||| Sbjct: 35916 tctttggttggagtctctgg 35897
>gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete sequence Length = 191289 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ttgtctttggttggagtctc 415 |||||||||||||||||||| Sbjct: 140390 ttgtctttggttggagtctc 140371
>emb|AL591711.22| Mouse DNA sequence from clone RP23-19L12 on chromosome 2, complete sequence Length = 197743 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 taatcctggaaatagaagtt 163 |||||||||||||||||||| Sbjct: 33875 taatcctggaaatagaagtt 33856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,572,966 Number of Sequences: 3902068 Number of extensions: 3572966 Number of successful extensions: 63346 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62995 Number of HSP's gapped (non-prelim): 346 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
