ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal14g24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY813878.1| Schistosoma japonicum SJCHGC09037 protein mRNA, c... 44 0.22
2gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete... 42 0.85
3gb|AC161579.4| Mus musculus chromosome 19, clone RP23-298M4, com... 40 3.4
4gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 3.4

>gb|AY813878.1| Schistosoma japonicum SJCHGC09037 protein mRNA, complete cds
          Length = 1019

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 132 aaacgagcacatgcagaaaaag 153
           ||||||||||||||||||||||
Sbjct: 80  aaacgagcacatgcagaaaaag 101



to top

>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence
          Length = 152747

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   gcagaaaaaggcagcaaaatc 164
             |||||||||||||||||||||
Sbjct: 97590 gcagaaaaaggcagcaaaatc 97610



to top

>gb|AC161579.4| Mus musculus chromosome 19, clone RP23-298M4, complete sequence
          Length = 188366

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   aaatcttccgagtaggttcccctt 183
             ||||||||| ||||||||||||||
Sbjct: 19859 aaatcttcccagtaggttcccctt 19882



to top

>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gagcacatgcagaaaaaggcagca 159
            |||||||||||||||||| |||||
Sbjct: 5862 gagcacatgcagaaaaagacagca 5839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,579,895
Number of Sequences: 3902068
Number of extensions: 1579895
Number of successful extensions: 29331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29324
Number of HSP's gapped (non-prelim): 7
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top