ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal14g13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complet... 42 0.40
2gb|AC096552.3| Homo sapiens BAC clone RP11-41M22 from 2, complet... 42 0.40
3emb|BX465835.8| Mouse DNA sequence from clone RP23-42K18 on chro... 42 0.40
4emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on ch... 42 0.40
5gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
6gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
7gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome... 40 1.6
8gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence 40 1.6
9emb|AL355314.10| Human DNA sequence from clone RP11-598C10 on ch... 40 1.6
10gb|U23182.1| Caenorhabditis elegans cosmid F40B5, complete sequence 40 1.6
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
15dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
16dbj|AP004821.4| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
17dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
18dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
19dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
20dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
21gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, com... 40 1.6
22gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 38 6.3
23gb|AF101318.1| Caenorhabditis elegans cosmid Y73C8C, complete se... 38 6.3
24ref|XM_736750.1| Plasmodium chabaudi chabaudi hypothetical prote... 38 6.3
25gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, com... 38 6.3
26emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 38 6.3
27emb|AL031652.4|HS1119D9 Human DNA sequence from clone RP5-1119D9... 38 6.3
28gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 6.3
29gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, com... 38 6.3
30gb|AC112138.3| Homo sapiens 3 BAC RP11-715D1 (Roswell Park Cance... 38 6.3
31ref|XM_695299.1| PREDICTED: Danio rerio similar to dedicator of ... 38 6.3
32emb|AL772373.23| Zebrafish DNA sequence from clone CH211-143A22 ... 38 6.3
33gb|AC016948.4| Homo sapiens chromosome 3 BAC clone RP11-93N14 (R... 38 6.3
34gb|AF049132.1|AF049132 Florometra serratissima mitochondrion, co... 38 6.3
35gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, co... 38 6.3
36gb|AC023423.5|AC023423 Homo sapiens BAC clone RP11-430C23 from Y... 38 6.3
37gb|AF436130.1| Human papillomavirus type 74 subtype AE10, comple... 38 6.3
38emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 38 6.3
39gb|U40822.1|HPU40822 Human papillomavirus type 74 E6 protein (E6... 38 6.3
40gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, compl... 38 6.3
41gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, compl... 38 6.3
42emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 38 6.3 
>gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complete sequence
          Length = 155217

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    catatgaactttacaaattaa 50
             |||||||||||||||||||||
Sbjct: 22120 catatgaactttacaaattaa 22100
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>gb|AC096552.3| Homo sapiens BAC clone RP11-41M22 from 2, complete sequence
          Length = 119452

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    atgaactttacaaattaaata 53
             |||||||||||||||||||||
Sbjct: 49655 atgaactttacaaattaaata 49635
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>emb|BX465835.8| Mouse DNA sequence from clone RP23-42K18 on chromosome 4, complete
             sequence
          Length = 113482

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tgcatatactgaattatcaaa 130
             |||||||||||||||||||||
Sbjct: 66037 tgcatatactgaattatcaaa 66057
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>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete
             sequence
          Length = 206918

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 83    catatattaattatcataggtgatg 107
             ||||| |||||||||||||||||||
Sbjct: 75210 catattttaattatcataggtgatg 75186
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>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
             complete sequence
          Length = 164501

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    cctgacatatattaattatcatag 101
             |||||||||||| |||||||||||
Sbjct: 58259 cctgacatatataaattatcatag 58282
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>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC
            OSJNBa0070J19, complete sequence
          Length = 158749

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   cctgacatatattaattatcatag 101
            |||||||||||| |||||||||||
Sbjct: 4988 cctgacatatataaattatcatag 4965
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>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     atgaactttacaaattaaat 52
              ||||||||||||||||||||
Sbjct: 142215 atgaactttacaaattaaat 142234
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>gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence
          Length = 34037

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 38   ctttacaaattaaatacaacacat 61
            |||||||||||||| |||||||||
Sbjct: 3080 ctttacaaattaaaaacaacacat 3103
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>emb|AL355314.10| Human DNA sequence from clone RP11-598C10 on chromosome 10, complete
            sequence
          Length = 73750

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  tgatgcatgcatatactgaa 122
            ||||||||||||||||||||
Sbjct: 3126 tgatgcatgcatatactgaa 3145
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>gb|U23182.1| Caenorhabditis elegans cosmid F40B5, complete sequence
          Length = 22237

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   gaactttacaaattaaatac 54
            ||||||||||||||||||||
Sbjct: 6574 gaactttacaaattaaatac 6593
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 78      cctgacatatattaattatcatag 101
               |||||||||||| |||||||||||
Sbjct: 3454144 cctgacatatataaattatcatag 3454167
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 78       cctgacatatattaattatcatag 101
                |||||||||||| |||||||||||
Sbjct: 12388847 cctgacatatataaattatcatag 12388870
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 78       cctgacatatattaattatcatag 101
                |||||||||||| |||||||||||
Sbjct: 12903412 cctgacatatataaattatcatag 12903389
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 78       cctgacatatattaattatcatag 101
                |||||||||||| |||||||||||
Sbjct: 16186013 cctgacatatataaattatcatag 16185990
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>dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1451_A02
          Length = 135861

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 78   cctgacatatattaattatcatag 101
            |||||||||||| |||||||||||
Sbjct: 7032 cctgacatatataaattatcatag 7055
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>dbj|AP004821.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0676G08
          Length = 153154

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    cctgacatatattaattatcatag 101
             |||||||||||| |||||||||||
Sbjct: 62420 cctgacatatataaattatcatag 62397
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>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0045D08
          Length = 160541

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     cctgacatatattaattatcatag 101
              |||||||||||| |||||||||||
Sbjct: 147496 cctgacatatataaattatcatag 147519
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A18
          Length = 176755

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     cctgacatatattaattatcatag 101
              |||||||||||| |||||||||||
Sbjct: 122894 cctgacatatataaattatcatag 122871
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>dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1058_F03
          Length = 150486

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     cctgacatatattaattatcatag 101
              |||||||||||| |||||||||||
Sbjct: 122625 cctgacatatataaattatcatag 122648
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>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0688H12
          Length = 139279

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    cctgacatatattaattatcatag 101
             |||||||||||| |||||||||||
Sbjct: 13055 cctgacatatataaattatcatag 13032
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>gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, complete sequence
          Length = 200341

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   atgaactttacaaattaaat 52
            ||||||||||||||||||||
Sbjct: 6713 atgaactttacaaattaaat 6732
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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     ctttacaaattaaatacaa 56
              |||||||||||||||||||
Sbjct: 143547 ctttacaaattaaatacaa 143529
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>gb|AF101318.1| Caenorhabditis elegans cosmid Y73C8C, complete sequence
          Length = 36277

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    tacacacatatgaacttta 42
             |||||||||||||||||||
Sbjct: 12900 tacacacatatgaacttta 12918
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>ref|XM_736750.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000713.02.0)
           partial mRNA
          Length = 2301

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 111 gcatatactgaattatcaa 129
           |||||||||||||||||||
Sbjct: 266 gcatatactgaattatcaa 248
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>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence
          Length = 206087

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    tatactgaattatcaaagg 132
              |||||||||||||||||||
Sbjct: 149863 tatactgaattatcaaagg 149881
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part
              of the PARD3 gene for par-3 partitioning defective 3
              homolog (C.elegans), complete sequence
          Length = 193131

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     ctttacaaattaaatacaa 56
              |||||||||||||||||||
Sbjct: 139939 ctttacaaattaaatacaa 139921
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>emb|AL031652.4|HS1119D9 Human DNA sequence from clone RP5-1119D9 on chromosome 20p12 Contains the
              3' end of the PAK7 gene for p21(CDKN1A)-activated kinase 7,
              two novel genes, the 3' end of the PLCB4 gene for
              phospholipase C beta 4 and two CpG islands, complete
              sequence
          Length = 148641

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 38     ctttacaaattaaatacaacaca 60
              |||||||||||||||||| ||||
Sbjct: 138038 ctttacaaattaaatacaccaca 138060
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     gaactttacaaattaaata 53
              |||||||||||||||||||
Sbjct: 158499 gaactttacaaattaaata 158481
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>gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, complete sequence
          Length = 191640

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 106   tgcatgcatatactgaattatca 128
             ||||||||||||||||| |||||
Sbjct: 48008 tgcatgcatatactgaagtatca 48030
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>gb|AC112138.3| Homo sapiens 3 BAC RP11-715D1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 133897

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 29    acatatgaactttacaaattaaa 51
             |||||||||||||| ||||||||
Sbjct: 38724 acatatgaactttagaaattaaa 38746
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>ref|XM_695299.1| PREDICTED: Danio rerio similar to dedicator of cytokinesis 5
           (LOC571688), partial mRNA
          Length = 4047

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 5   ctcttccgtttcattgtgc 23
           |||||||||||||||||||
Sbjct: 669 ctcttccgtttcattgtgc 687
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>emb|AL772373.23| Zebrafish DNA sequence from clone CH211-143A22 in linkage group 14,
             complete sequence
          Length = 185265

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    acatatattaattatcata 100
             |||||||||||||||||||
Sbjct: 23612 acatatattaattatcata 23594
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>gb|AC016948.4| Homo sapiens chromosome 3 BAC clone RP11-93N14 (Rosewell Park Cancer
              Institute Human Bac Library) complete sequence
          Length = 154350

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 29     acatatgaactttacaaattaaa 51
              |||||||||||||| ||||||||
Sbjct: 116139 acatatgaactttagaaattaaa 116161
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>gb|AF049132.1|AF049132 Florometra serratissima mitochondrion, complete genome
          Length = 16005

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   tatgaactttacaaattaa 50
            |||||||||||||||||||
Sbjct: 7241 tatgaactttacaaattaa 7223
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>gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, complete sequence
          Length = 204674

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    acaaattaaatacaacaca 60
             |||||||||||||||||||
Sbjct: 22055 acaaattaaatacaacaca 22073
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>gb|AC023423.5|AC023423 Homo sapiens BAC clone RP11-430C23 from Y, complete sequence
          Length = 88016

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 28    cacatatgaactttacaaattaaatac 54
             |||||||||| | ||||||||||||||
Sbjct: 39408 cacatatgaattctacaaattaaatac 39434
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>gb|AF436130.1| Human papillomavirus type 74 subtype AE10, complete genome
          Length = 7887

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 112  catatactgaattatcaaaggtt 134
            ||||||||| |||||||||||||
Sbjct: 4978 catatactggattatcaaaggtt 4956
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                              
Query: 31      atatgaactttacaaattaaatacaacacat 61
               ||||||| |||| ||||||||||||| ||||
Sbjct: 2851234 atatgaattttataaattaaatacaatacat 2851204
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>gb|U40822.1|HPU40822 Human papillomavirus type 74 E6 protein (E6), E7 protein (E7), and
           L1 protein (L1) genes, complete cds
          Length = 3891

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 112 catatactgaattatcaaaggtt 134
           ||||||||| |||||||||||||
Sbjct: 59  catatactggattatcaaaggtt 37
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>gb|AC142258.4| Mus musculus BAC clone RP24-511I20 from 13, complete sequence
          Length = 159880

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 3      acctcttccgtttcattgtgcta 25
              ||||||||| |||||||||||||
Sbjct: 109428 acctcttccctttcattgtgcta 109406
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>gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, complete sequence
          Length = 220202

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 41    tacaaattaaatacaacacatgg 63
             ||||||| |||||||||||||||
Sbjct: 75909 tacaaatcaaatacaacacatgg 75931
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                              
Query: 31      atatgaactttacaaattaaatacaacacat 61
               ||||||| |||| ||||||||||||| ||||
Sbjct: 2696512 atatgaattttataaattaaatacaatacat 2696482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,522,618
Number of Sequences: 3902068
Number of extensions: 1522618
Number of successful extensions: 137689
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137325
Number of HSP's gapped (non-prelim): 364
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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