| Clone Name | rbaal14g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108754.1| Zea mays PCO136495 mRNA sequence Length = 945 Score = 135 bits (68), Expect = 2e-28 Identities = 175/211 (82%) Strand = Plus / Minus Query: 345 tgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccaccgtc 404 ||||||||||||| |||||||| || | |||| | || |||||||| |||||||||| || Sbjct: 566 tgacactgggcatcaccacaacgtgagctatattcccttcacaagccagctgccaccttc 507 Query: 405 gcacaaactcctcgtcctttggcctctcaaaaactactgtactgctgagctcgttangca 464 | ||||| || || ||||||||||| ||||| || || || || |||||||||||| ||| Sbjct: 506 ggacaaattcttcatcctttggcctttcaaacacgaccgtgctactgagctcgttaagca 447 Query: 465 tcgcactaattccagcatccttgagccgatctttaaggtaatgtgcatttctcaagcatt 524 |||| | ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct: 446 tcgctccgattcctgcttccttgaggcgatcttttaggtagtgtgcgtttctcaagcact 387 Query: 525 tctgaacttccttctgaaaacctctatagcc 555 | || ||||| ||||| || ||||| ||||| Sbjct: 386 tttggacttctttctggaagcctctgtagcc 356
>gb|BT013309.1| Lycopersicon esculentum clone 134978F, mRNA sequence Length = 1706 Score = 79.8 bits (40), Expect = 9e-12 Identities = 173/215 (80%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 327 tatccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcac 386 ||||||||||||| || || ||||| ||||| || |||||||||| ||| ||| |||| Sbjct: 1404 tatccagcttatcaactgtcacactaggcatcacaacaacatgtgccatatttctttcac 1345 Query: 387 aagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtac 446 ||||||| |||||| || ||||||||||| || || || | ||||||||| ||||| | Sbjct: 1344 aagcaagttgccacttgcgaacaaactcctcatctttaggtcgctcaaaaacaactgtgc 1285 Query: 447 tgctgagctcgttangcatcgcactaattccagcatcct-tgagccgatctttaaggtaa 505 |||| ||||| || |||| ||||| |||||||| |||| | || || ||||| | ||| Sbjct: 1284 tgctcagctcattcagcatagcactgattccagc-tcctataaggcggtctttcaaataa 1226 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || ||||| |||| ||| ||||| ||||||||||| Sbjct: 1225 tgagcattcctcaggcacttctggacttccttctg 1191
>gb|BT012721.1| Lycopersicon esculentum clone 113647F, mRNA sequence Length = 1842 Score = 79.8 bits (40), Expect = 9e-12 Identities = 173/215 (80%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 327 tatccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcac 386 ||||||||||||| || || ||||| ||||| || |||||||||| ||| ||| |||| Sbjct: 1441 tatccagcttatcaactgtcacactaggcatcacaacaacatgtgccatatttctttcac 1382 Query: 387 aagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtac 446 ||||||| |||||| || ||||||||||| || || || | ||||||||| ||||| | Sbjct: 1381 aagcaagttgccacttgcgaacaaactcctcatctttaggtcgctcaaaaacaactgtgc 1322 Query: 447 tgctgagctcgttangcatcgcactaattccagcatcct-tgagccgatctttaaggtaa 505 |||| ||||| || |||| ||||| |||||||| |||| | || || ||||| | ||| Sbjct: 1321 tgctcagctcattcagcatagcactgattccagc-tcctataaggcggtctttcaaataa 1263 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || ||||| |||| ||| ||||| ||||||||||| Sbjct: 1262 tgagcattcctcaggcacttctggacttccttctg 1228
>dbj|AB014076.1| Brassica napus mRNA for serine decarboxylase, complete cds Length = 1897 Score = 75.8 bits (38), Expect = 1e-10 Identities = 169/213 (79%) Strand = Plus / Minus Query: 328 atccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcaca 387 ||||||||| || || || ||||| ||||| ||||| ||||| | |||| || | ||| Sbjct: 1490 atccagcttctctactgtaacacttggcataaccaccacatgagctatatcgccttgaca 1431 Query: 388 agcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtact 447 |||||||||||||| || |||||||| || ||||| || | ||||| || || || || Sbjct: 1430 agcaagctgccaccttctgacaaactcttcctccttgggacgttcaaagaccacagtgct 1371 Query: 448 gctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaatg 507 ||| ||||| || ||||||| || || ||||| || ||| || ||||| |||||||| Sbjct: 1370 gctaagctcattgagcatcgcgctgatcccagcttcacggagtcggtctttgaggtaatg 1311 Query: 508 tgcatttctcaagcatttctgaacttccttctg 540 |||||||||| |||||||||||| |||||||| Sbjct: 1310 cgcatttctcaggcatttctgaacctccttctg 1278
>ref|NM_103496.2| Arabidopsis thaliana EMB1075; carboxy-lyase AT1G43710 (EMB1075) mRNA, complete cds Length = 1749 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1360 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1301 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1300 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1241 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1240 tgcgcgtttctcaagcatttctgaacttctttctg 1206
>gb|AY040033.1| Arabidopsis thaliana putative histidine decarboxylase (At1g43710) mRNA, complete cds Length = 1449 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1274 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1215 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1214 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1155 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1154 tgcgcgtttctcaagcatttctgaacttctttctg 1120
>gb|AF360233.1| Arabidopsis thaliana putative histidine decarboxylase (At1g43710) mRNA, complete cds Length = 1675 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1360 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1301 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1300 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1241 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1240 tgcgcgtttctcaagcatttctgaacttctttctg 1206
>gb|AF389349.1|AF389349 Arabidopsis thaliana serine decarboxylase mRNA, complete cds Length = 1584 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1300 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1241 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1240 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1181 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1180 tgcgcgtttctcaagcatttctgaacttctttctg 1146
>emb|BX814962.1|CNS0ADZU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZD12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1330 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1271 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1270 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1211 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1210 tgcgcgtttctcaagcatttctgaacttctttctg 1176
>emb|BX813828.1|CNS0ADR1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB41ZD06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1573 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1232 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1173 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1172 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1113 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1112 tgcgcgtttctcaagcatttctgaacttctttctg 1078
>gb|AC009526.4|AC009526 Arabidopsis thaliana chromosome I BAC F2J6 genomic sequence, complete sequence Length = 108061 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Plus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 45121 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 45180 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 45181 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 45240 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 45241 tgcgcgtttctcaagcatttctgaacttctttctg 45275
>dbj|AB030379.1| Arabidopsis thaliana AtHDC mRNA for histidine decarboxylase, complete cds Length = 1605 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 1289 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 1230 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 1229 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 1170 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 1169 tgcgcgtttctcaagcatttctgaacttctttctg 1135
>dbj|AB036933.1| Arabidopsis thaliana AtHDC gene for histidine decarboxylase, complete cds Length = 3564 Score = 71.9 bits (36), Expect = 2e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 386 caagcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgta 445 |||||||||||||||| || |||||||| || || || |||| ||||| || || || Sbjct: 3136 caagcaagctgccaccttctaacaaactcttcatctttaggccgttcaaagaccacagtg 3077 Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| || ||||| ||||| || || || ||||| |||||| Sbjct: 3076 ctgctaagctcattaagcatggcgctaatcccagcttcacgaagtcggtctttgaggtaa 3017 Query: 506 tgtgcatttctcaagcatttctgaacttccttctg 540 || || ||||||||||||||||||||||| ||||| Sbjct: 3016 tgcgcgtttctcaagcatttctgaacttctttctg 2982
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 166/212 (78%) Strand = Plus / Minus Query: 329 tccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcacaa 388 |||||||| |||| || ||||||||||| ||||| ||||| | || | ||||| || Sbjct: 20131495 tccagcttgtcgatggtcacactgggcatcaccacgacatgagcgatgttgccctcgcag 20131436 Query: 389 gcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtactg 448 || |||||||||| || || |||||||||||||| ||||| || || || || || ||| Sbjct: 20131435 gcgagctgccacctccggacgaactcctcgtccttgggcctttcgaacaccacggtgctg 20131376 Query: 449 ctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaatgt 508 || |||||||| |||| || | |||||||| |||||||| || || || ||||| || Sbjct: 20131375 ctcagctcgttgagcatggcgccgattccagcttccttgaggcggtccttcaggtagtga 20131316 Query: 509 gcatttctcaagcatttctgaacttccttctg 540 || || |||| ||| ||||| || |||||||| Sbjct: 20131315 gcgttcctcaggcacttctggacctccttctg 20131284
>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0472F10 Length = 136076 Score = 58.0 bits (29), Expect = 3e-05 Identities = 166/212 (78%) Strand = Plus / Minus Query: 329 tccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcacaa 388 |||||||| |||| || ||||||||||| ||||| ||||| | || | ||||| || Sbjct: 4801 tccagcttgtcgatggtcacactgggcatcaccacgacatgagcgatgttgccctcgcag 4742 Query: 389 gcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtactg 448 || |||||||||| || || |||||||||||||| ||||| || || || || || ||| Sbjct: 4741 gcgagctgccacctccggacgaactcctcgtccttgggcctttcgaacaccacggtgctg 4682 Query: 449 ctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaatgt 508 || |||||||| |||| || | |||||||| |||||||| || || || ||||| || Sbjct: 4681 ctcagctcgttgagcatggcgccgattccagcttccttgaggcggtccttcaggtagtga 4622 Query: 509 gcatttctcaagcatttctgaacttccttctg 540 || || |||| ||| ||||| || |||||||| Sbjct: 4621 gcgttcctcaggcacttctggacctccttctg 4590
>dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1298_H07 Length = 106434 Score = 58.0 bits (29), Expect = 3e-05 Identities = 166/212 (78%) Strand = Plus / Minus Query: 329 tccagcttatcgacagtgacactgggcattaccacaacatgtgatatacttccctcacaa 388 |||||||| |||| || ||||||||||| ||||| ||||| | || | ||||| || Sbjct: 80018 tccagcttgtcgatggtcacactgggcatcaccacgacatgagcgatgttgccctcgcag 79959 Query: 389 gcaagctgccaccgtcgcacaaactcctcgtcctttggcctctcaaaaactactgtactg 448 || |||||||||| || || |||||||||||||| ||||| || || || || || ||| Sbjct: 79958 gcgagctgccacctccggacgaactcctcgtccttgggcctttcgaacaccacggtgctg 79899 Query: 449 ctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaatgt 508 || |||||||| |||| || | |||||||| |||||||| || || || ||||| || Sbjct: 79898 ctcagctcgttgagcatggcgccgattccagcttccttgaggcggtccttcaggtagtga 79839 Query: 509 gcatttctcaagcatttctgaacttccttctg 540 || || |||| ||| ||||| || |||||||| Sbjct: 79838 gcgttcctcaggcacttctggacctccttctg 79807
>ref|NM_194520.1| Oryza sativa (japonica cultivar-group) putative histidine decarboxylase (OSJNBa0071K19.20), mRNA Length = 1404 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 1245 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 1187
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 174336 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 174278
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03, complete sequence Length = 141017 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 13452 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 13394
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 409278 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 409220
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 409278 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 409220
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 343 agtgacactgggcattaccacaacatgtgatatacttccctcacaagcaagctgccacc 401 ||||||| | ||||| || |||| ||||| || | |||||||||||||||| ||||||| Sbjct: 409275 agtgacatttggcatcacaacaatatgtgctaaatttccctcacaagcaagttgccacc 409217
>gb|AC150308.1| Latimeria menadoensis clone VMRC4-24C12, complete sequence Length = 150025 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 catgacaacaatgaacaataaa 111 |||||||||||||||||||||| Sbjct: 118252 catgacaacaatgaacaataaa 118231
>gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, complete sequence Length = 199065 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 gacagtgacactgggcattaccaca 364 |||||||| |||||||||||||||| Sbjct: 138245 gacagtgatactgggcattaccaca 138269
>emb|CR450741.5| Zebrafish DNA sequence from clone CH211-269F16 in linkage group 24, complete sequence Length = 157603 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 tcatttaagaaagtatccagc 334 ||||||||||||||||||||| Sbjct: 112853 tcatttaagaaagtatccagc 112873
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1 Contains GSSs, complete sequence Length = 101453 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 aattctcctggccaacatcagctgc 255 ||||||||||||||||| ||||||| Sbjct: 68811 aattctcctggccaacagcagctgc 68835
>emb|AL049198.2|HS590K14 Human DNA sequence from clone RP4-590K14 on chromosome 1q25.3-31.2 Contains EST and GSSs, complete sequence Length = 41015 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 tggccaacatcagctgcaatg 259 ||||||||||||||||||||| Sbjct: 31905 tggccaacatcagctgcaatg 31925
>dbj|AB221013.2| Beta vulgaris BvSDC1 mRNA for putative serine decarboxylase, complete cds Length = 1970 Score = 42.1 bits (21), Expect = 1.9 Identities = 56/68 (82%) Strand = Plus / Minus Query: 446 ctgctgagctcgttangcatcgcactaattccagcatccttgagccgatctttaaggtaa 505 ||||| ||||| ||| |||| |||||||||||| | || | ||||| ||||||||||| Sbjct: 1374 ctgcttagctcattaagcatggcactaattccaacctctctaagccggtctttaaggtag 1315 Query: 506 tgtgcatt 513 || ||||| Sbjct: 1314 tgggcatt 1307
>emb|BX537129.6| Zebrafish DNA sequence from clone CH211-236I20 in linkage group 18, complete sequence Length = 166655 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 tcatttaagaaagtatccagc 334 ||||||||||||||||||||| Sbjct: 33981 tcatttaagaaagtatccagc 33961
>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13, complete sequence Length = 140946 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 353 ggcattaccacaacatgtgatatacttccctcacaagcaagctgccac 400 ||||||||||||||||| | || | |||| |||| |||||||||||| Sbjct: 24322 ggcattaccacaacatgagctacatttcctgcacatgcaagctgccac 24275
>emb|CR762389.21| Zebrafish DNA sequence from clone DKEY-240O2 in linkage group 5, complete sequence Length = 110973 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gacaccaaccaatgtaaata 159 |||||||||||||||||||| Sbjct: 72027 gacaccaaccaatgtaaata 72046
>emb|AL357936.25| Human DNA sequence from clone RP11-524G24 on chromosome 9 Contains the 5' end of two variants of the DAB2IP gene for DAB2 interacting protein (AF9Q34, DIP1/2, KIAA1743), a novel gene and two CpG islands, complete sequence Length = 107529 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 413 tcctcgtcctttggcctctcaaaa 436 ||||| |||||||||||||||||| Sbjct: 58113 tcctcctcctttggcctctcaaaa 58090
>emb|AL118510.6|HSJ858M22 Human DNA sequence from clone RP5-858M22 on chromosome 20 Contains part of the C20orf133 gene for chromosome 20 open reading frame 133 and the RPS10P2 gene for ribosomal protein S10 pseudogene 2, complete sequence Length = 124114 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 ttctgaacttccttctgaaa 543 |||||||||||||||||||| Sbjct: 51754 ttctgaacttccttctgaaa 51735
>emb|AL662802.14| Mouse DNA sequence from clone RP23-34N10 on chromosome 11, complete sequence Length = 224024 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 catttctgaacttccttctg 540 |||||||||||||||||||| Sbjct: 213446 catttctgaacttccttctg 213465
>emb|BX005109.23| Zebrafish DNA sequence from clone CH211-284K5 in linkage group 25, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 catttctcaagcatttctga 529 |||||||||||||||||||| Sbjct: 152845 catttctcaagcatttctga 152826
>emb|AL049925.1|HSM800267 Homo sapiens mRNA; cDNA DKFZp564G0982 (from clone DKFZp564G0982) Length = 1693 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 tgctaagatctgtctcgtat 56 |||||||||||||||||||| Sbjct: 945 tgctaagatctgtctcgtat 926
>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence Length = 210849 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tgctactgtgctaagatctg 48 |||||||||||||||||||| Sbjct: 155387 tgctactgtgctaagatctg 155368
>gb|AC012378.10| Homo sapiens chromosome 15 clone RP11-420M1 map 15q21.3, complete sequence Length = 199289 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tgctaagatctgtctcgtat 56 |||||||||||||||||||| Sbjct: 7363 tgctaagatctgtctcgtat 7382
>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete sequence Length = 114149 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tgctaagatctgtctcgtat 56 |||||||||||||||||||| Sbjct: 109842 tgctaagatctgtctcgtat 109861
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 353 ggcattaccacaacatgtgatatacttccctcacaagcaagctgccac 400 ||||||||||||||||| | || | |||| |||| |||||||||||| Sbjct: 15772628 ggcattaccacaacatgagctacatttcctgcacatgcaagctgccac 15772581
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 353 ggcattaccacaacatgtgatatacttccctcacaagcaagctgccac 400 ||||||||||||||||| | || | |||| |||| |||||||||||| Sbjct: 15860005 ggcattaccacaacatgagctacatttcctgcacatgcaagctgccac 15859958
>emb|AL837510.5| Mouse DNA sequence from clone RP23-200B23 on chromosome 4, complete sequence Length = 199537 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 acatttgaactcacagagtg 191 |||||||||||||||||||| Sbjct: 15151 acatttgaactcacagagtg 15170
>emb|AL590997.13| Mouse DNA sequence from clone RP23-132J20 on chromosome 11, complete sequence Length = 200602 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttctcaagcatttctgaact 532 |||||||||||||||||||| Sbjct: 115276 ttctcaagcatttctgaact 115295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,632,599 Number of Sequences: 3902068 Number of extensions: 5632599 Number of successful extensions: 103332 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103146 Number of HSP's gapped (non-prelim): 173 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)