Clone Information

BLAST Search Result

Clone Name	rbaal14f22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-cont...	72	4e-13
2	ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-cont...	71	5e-13
3	RF1_PYRKO (Q5JGK6) Peptide chain release factor subunit 1 (Trans...	33	0.17
4	RF1_PYRFU (Q8U0J4) Peptide chain release factor subunit 1 (Trans...	32	0.48
5	PDE1B_CRIGR (Q64395) Calcium/calmodulin-dependent 3',5'-cyclic n...	30	1.4
6	PDE1B_BOVIN (Q01061) Calcium/calmodulin-dependent 3',5'-cyclic n...	30	1.8
7	RF1_PYRAB (Q9V151) Peptide chain release factor subunit 1 (Trans...	30	1.8
8	NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog prec...	29	2.4
9	PDE1B_RAT (Q01066) Calcium/calmodulin-dependent 3',5'-cyclic nuc...	29	2.4
10	PDE1B_MOUSE (Q01065) Calcium/calmodulin-dependent 3',5'-cyclic n...	29	2.4
11	RF1_PYRHO (O59264) Peptide chain release factor subunit 1 (Trans...	29	2.4
12	NR1D2_RAT (Q63504) Orphan nuclear receptor NR1D2 (Rev-erb-beta) ...	29	3.1
13	RADA_HAEIN (P45266) DNA repair protein radA homolog (DNA repair ...	29	3.1
14	NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-relat...	29	3.1
15	NR1D2_HUMAN (Q14995) Orphan nuclear receptor NR1D2 (Rev-erb-beta...	29	3.1
16	NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related...	29	3.1
17	NR1D2_MOUSE (Q60674) Orphan nuclear receptor NR1D2 (Rev-erb-beta...	29	3.1
18	RL40_SULTO (Q976I5) 50S ribosomal protein L40e	28	4.1
19	ISPG_PSESM (Q886Z0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	4.1
20	UVRC_STRPM (Q48TS8) UvrABC system protein C (Protein uvrC) (Exci...	28	4.1
21	UVRC_STRP8 (Q8P163) UvrABC system protein C (Protein uvrC) (Exci...	28	4.1
22	UVRC_STRP6 (Q5XCC0) UvrABC system protein C (Protein uvrC) (Exci...	28	4.1
23	E75_CHOFU (O01639) Ecdysone-inducible protein E75	28	5.3
24	Y937_SYNP6 (P05675) Hypothetical protein syc0937_d	28	5.3
25	ISPG_PSEPK (Q88PJ7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	5.3
26	ISPG_FUSNN (Q8RG40) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	5.3
27	APO2_ARATH (Q8W4A5) APO protein 2, chloroplast precursor (Accumu...	28	5.3
28	YJCS_ECOLI (P32717) Hypothetical protein yjcS	28	5.3
29	E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)	28	5.3
30	RNFD_RHOCA (Q52715) Electron transport complex protein rnfD (Nit...	28	5.3
31	ISPG_PSEAE (Q9HXJ4) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	5.3
32	E75_MANSE (Q08893) Ecdysone-inducible protein E75	28	5.3
33	E75_METEN (O77245) Nuclear hormone receptor E75	28	5.3
34	E75_GALME (P50239) Ecdysone-inducible protein E75	28	5.3
35	E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (...	28	5.3
36	ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2	28	5.3
37	OE66_NPVLS (P89518) Occlusion-derived virus envelope protein E66...	28	5.3
38	ISPG_BUCAI (P57374) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	5.3
39	PAC2_PSES3 (P15558) Penicillin acylase 2 precursor (EC 3.5.1.11)...	28	6.9
40	Y2293_ARCFU (O27991) Hypothetical protein AF2293	28	6.9
41	SLIT2_RAT (Q9WVC1) Slit homolog 2 protein precursor (Slit-2) (Fr...	28	6.9
42	DEOC2_MESFL (Q6F0H8) Deoxyribose-phosphate aldolase 2 (EC 4.1.2....	28	6.9
43	FDEH_PSEPU (P09347) 5-exo-alcohol dehydrogenase (EC 1.1.1.-) (FDEH)	28	6.9
44	SLIT2_MOUSE (Q9R1B9) Slit homolog 2 protein precursor (Slit-2) [...	28	6.9
45	MTM1_MICAM (P50190) Modification methylase MamI (EC 2.1.1.72) (A...	27	9.1

>ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = -2

Query: 370 CPLCSKSVCDMSKAWERLDAELAT--LSNSFDDKMVRILCNDCGAVSEVQFHLIAHKCHS 197
           CPLC  S  DM++ W +LD E+A   + + + +  V ILCNDC   S VQFH++  KC  
Sbjct: 183 CPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKI 242

Query: 196 CKSYNTRQ 173
           C+SYNT Q
Sbjct: 243 CESYNTAQ 250

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>ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 71.2 bits (173), Expect = 5e-13
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = -2

Query: 370 CPLCSKSVCDMSKAWERLDAELAT--LSNSFDDKMVRILCNDCGAVSEVQFHLIAHKCHS 197
           CPLC  S  DM++ W +LD E+A   + + + +  V ILCNDC   S VQFH++  KC  
Sbjct: 183 CPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKL 242

Query: 196 CKSYNTRQ 173
           C SYNT Q
Sbjct: 243 CDSYNTAQ 250

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>RF1_PYRKO (Q5JGK6) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 415

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = -2

Query: 343 DMSKAWERLDAELATLSNSFDDKMVRILCNDCG-----AVSEVQFHLIAHKCHSCKSYNT 179
           ++ KA E    +   +S  +D   VR  CN+CG      +SE +FH+   +   C    +
Sbjct: 302 EVRKALELGAVDKLLISEGYDKVRVRAKCNNCGWEELKTMSEGEFHVYKKQLTHCPKCGS 361

Query: 178 RQI*SSEPWRDSTFFLEVGERAPA-VEIDS 92
           + I + E W  +   +++ E + A VEI S
Sbjct: 362 QNI-TFEKWDVAEELIKMAEESGADVEIIS 390

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>RF1_PYRFU (Q8U0J4) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 420

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
 Frame = -2

Query: 388 KHCQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCG-----AVSEVQF 224
           KH      L +    ++ KA E    +   +S  +D   V + CN+CG      +SE ++
Sbjct: 290 KHIVKDTGLATYGEREVRKALELGAVDTLLISEGYDKVRVHVKCNNCGWEELKTMSEEEY 349

Query: 223 HLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEVGERAPA-VEIDS 92
                +  +C    ++ + + E W  +   +++ E A + VEI S
Sbjct: 350 EAYKKRIQTCPKCGSQNL-TFEKWEVAEELIKIAEEAGSNVEIIS 393

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>PDE1B_CRIGR (Q64395) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide|
           phosphodiesterase 1B (EC 3.1.4.17) (Cam-PDE 1B)
           (Fragment)
          Length = 199

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 249 QSLHNMRTILSSKEFDRVASSASSLSHAFDMSHTDLEQSGHANW 380
           Q + +M+T L   E    + + S L HA D+SH   + S H++W
Sbjct: 149 QQVKSMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVHSHW 192

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>PDE1B_BOVIN (Q01061) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide|
           phosphodiesterase 1B (EC 3.1.4.17) (Cam-PDE 1B) (63 kDa
           Cam-PDE)
          Length = 534

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 249 QSLHNMRTILSSKEFDRVASSASSLSHAFDMSHTDLEQSGHANW 380
           Q + +M+T L   E    + + S L HA D+SH   + S H+ W
Sbjct: 339 QQVKSMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVHSRW 382

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>RF1_PYRAB (Q9V151) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 417

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
 Frame = -2

Query: 388 KHCQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCG-----AVSEVQF 224
           KH      L +    ++ +A E    +   +S  +D   VR  CN CG      +SE +F
Sbjct: 290 KHVVKDTGLATYGEREVRRALEIGAVDTLLISEGYDKVRVRAKCNHCGWEELKTMSEEEF 349

Query: 223 HLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEVGERAPA-VEIDS 92
            +   K   C    ++ + + E W  +   +++ E A + VEI S
Sbjct: 350 EVYKKKLTRCPKCGSQNL-TIEKWDVAEELIKMAEEAGSDVEIIS 393

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>NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog precursor (XOTCH|
           protein)
          Length = 2524

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 385 HCQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDC 248
           +C+     C+ ++CD  K  +++D    T    +  K+  I  N+C
Sbjct: 636 NCETKIDDCASNLCDNGKCIDKIDGYECTCEPGYTGKLCNININEC 681

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>PDE1B_RAT (Q01066) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide|
           phosphodiesterase 1B (EC 3.1.4.17) (Cam-PDE 1B) (63 kDa
           Cam-PDE)
          Length = 535

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 249 QSLHNMRTILSSKEFDRVASSASSLSHAFDMSHTDLEQSGHANW 380
           Q +  M+T L   E    + + S L HA D+SH   + S H+ W
Sbjct: 340 QQVKTMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVHSRW 383

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>PDE1B_MOUSE (Q01065) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide|
           phosphodiesterase 1B (EC 3.1.4.17) (Cam-PDE 1B) (63 kDa
           Cam-PDE)
          Length = 535

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 249 QSLHNMRTILSSKEFDRVASSASSLSHAFDMSHTDLEQSGHANW 380
           Q +  M+T L   E    + + S L HA D+SH   + S H+ W
Sbjct: 340 QQVKTMKTALQQLERIDKSKALSLLLHAADISHPTKQWSVHSRW 383

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>RF1_PYRHO (O59264) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 417

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = -2

Query: 388 KHCQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCG-----AVSEVQF 224
           KH      L +    ++ +A E    ++  +S  ++   VR+ CN CG      +SE ++
Sbjct: 290 KHVVKDTGLATYGEREVRRALEIGAVDVLLISEGYNKVRVRVKCNHCGWEELKTMSEEEY 349

Query: 223 HLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEVGERAPA-VEIDS 92
            +   K   C    ++ + + E W  +   +++ E A + VEI S
Sbjct: 350 EVYRKKITKCPKCGSQNL-TIEKWDVAEELIKMAEEAGSDVEIIS 393

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>NR1D2_RAT (Q63504) Orphan nuclear receptor NR1D2 (Rev-erb-beta) (EAR4)|
          Length = 578

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI 170
           +LC  CG V+   FH   H C  CK +  R I
Sbjct: 101 LLCKVCGDVAS-GFHYGVHACEGCKGFFRRSI 131

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>RADA_HAEIN (P45266) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 458

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 262 LCNDCGAVSEVQFHLIAHKCHSCKSYNT 179
           +CNDCGA    +F     +C +CK++NT
Sbjct: 10  VCNDCGA----EFSRWQGQCSACKAWNT 33

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>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 614

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI 170
           +LC  CG V+   FH   H C  CK +  R I
Sbjct: 130 LLCKVCGDVAS-GFHYGVHACEGCKGFFRRSI 160

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>NR1D2_HUMAN (Q14995) Orphan nuclear receptor NR1D2 (Rev-erb-beta) (EAR-1R)|
           (Orphan nuclear hormone receptor BD73)
          Length = 579

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI 170
           +LC  CG V+   FH   H C  CK +  R I
Sbjct: 101 LLCKVCGDVAS-GFHYGVHACEGCKGFFRRSI 131

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>NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 508

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI 170
           +LC  CG V+   FH   H C  CK +  R I
Sbjct: 24  LLCKVCGDVAS-GFHYGVHACEGCKGFFRRSI 54

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>NR1D2_MOUSE (Q60674) Orphan nuclear receptor NR1D2 (Rev-erb-beta) (Orphan|
           nuclear receptor RVR)
          Length = 576

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI 170
           +LC  CG V+   FH   H C  CK +  R I
Sbjct: 101 LLCKVCGDVAS-GFHYGVHACEGCKGFFRRSI 131

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>RL40_SULTO (Q976I5) 50S ribosomal protein L40e|
          Length = 56

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 262 LCNDCGAVSEVQFHLIAHKCHSCKSYNTR 176
           +C DCGA++ V+    A KC  C S N R
Sbjct: 21  VCRDCGALNSVR----ATKCRRCHSKNLR 45

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>ISPG_PSESM (Q886Z0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 369

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHL 218
           +ACP CS+   D+ K    L+  L  L    D  ++  + N  G   E    L
Sbjct: 268 IACPSCSRQNFDVVKTMNELEGRLEDLLVPLDVAVIGCVVNGPGEAKEAHIGL 320

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>UVRC_STRPM (Q48TS8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 598

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 361 CSKSVCDMSKA-WERLDAELATLSNSFDDKMVRILCNDCGAVSE 233
           C+ ++C   KA W+RL  ++    N  DDK++  L +   A SE
Sbjct: 168 CAHTICHTDKAYWDRLIDDVKHFLNGKDDKIIEDLRSKMLAASE 211

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>UVRC_STRP8 (Q8P163) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 598

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 361 CSKSVCDMSKA-WERLDAELATLSNSFDDKMVRILCNDCGAVSE 233
           C+ ++C   KA W+RL  ++    N  DDK++  L +   A SE
Sbjct: 168 CAHTICHTDKAYWDRLIDDVKHFLNGKDDKIIEDLRSKMLAASE 211

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>UVRC_STRP6 (Q5XCC0) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 598

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 361 CSKSVCDMSKA-WERLDAELATLSNSFDDKMVRILCNDCGAVSE 233
           C+ ++C   KA W+RL  ++    N  DDK++  L +   A SE
Sbjct: 168 CAHTICHTDKAYWDRLIDDVKHFLNGKDDKIIEDLRSKMLAASE 211

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>E75_CHOFU (O01639) Ecdysone-inducible protein E75|
          Length = 690

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 45  VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 85

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>Y937_SYNP6 (P05675) Hypothetical protein syc0937_d|
          Length = 255

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 45  QINCPVICLRGKHHVDESISTAGARSPTSRKNVESLHG 158
           ++ CP I + G H   E ++    RSP   + V S+ G
Sbjct: 78  ELGCPAIAIAGNHDQPERLTEICGRSPFMGEPVYSIQG 115

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>ISPG_PSEPK (Q88PJ7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 369

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHL 218
           +ACP CS+   D+ K    L+  L  L    D  ++  + N  G   E    L
Sbjct: 268 IACPSCSRQNFDVVKTMNELEGRLEDLLVPLDVAVIGCVVNGPGEAKEAHVGL 320

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>ISPG_FUSNN (Q8RG40) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 354

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIA 212
           ++CP C ++  D+    ++++ E  T  N F   ++  + N  G   E  + + A
Sbjct: 261 ISCPTCGRTEIDLIGLAKQVEEEFRTKKNKFKIAVMGCVVNGPGEAREADYGIAA 315

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>APO2_ARATH (Q8W4A5) APO protein 2, chloroplast precursor (Accumulation of|
           photosystem I protein 2)
          Length = 440

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 277 KMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDS 143
           K+VR+  N CG  +E+      H   SCK  NT Q      W +S
Sbjct: 156 KVVRV--NACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNS 198

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>YJCS_ECOLI (P32717) Hypothetical protein yjcS|
          Length = 661

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 201 WHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDMSHTDLE 359
           +++ A+K  CT++ A  +LHN  T+  +K  D  +     L+   DM   D E
Sbjct: 298 FYIPALKALCTAENATHTLHNFYTLRGAKTRD-TSKWTEYLNETLDMWGNDAE 349

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>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 456 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 496

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>RNFD_RHOCA (Q52715) Electron transport complex protein rnfD (Nitrogen fixation|
           protein rnfD)
          Length = 358

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 246 PQSLHNMR-TILSSKEFDRVASSASSLSH 329
           P  LH +  T L S+EFD V SSAS+LSH
Sbjct: 151 PSFLHGLSITFLGSQEFDAV-SSASTLSH 178

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>ISPG_PSEAE (Q9HXJ4) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 371

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHL 218
           +ACP CS+   D+ K    L+  L  L    D  ++  + N  G   E    L
Sbjct: 270 IACPSCSRQNFDVVKTMNELEGRLEDLLVPMDVAVIGCVVNGPGEAKEAHVGL 322

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>E75_MANSE (Q08893) Ecdysone-inducible protein E75|
          Length = 699

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 43  VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 83

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>E75_METEN (O77245) Nuclear hormone receptor E75|
          Length = 606

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 30  VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 70

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>E75_GALME (P50239) Ecdysone-inducible protein E75|
          Length = 711

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 45  VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 85

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>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)|
          Length = 1199

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 265 ILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDST 140
           +LC  CG  +   FH   H C  CK +  R I     +R  T
Sbjct: 243 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 283

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>ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2|
          Length = 631

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERL--DAELATLSNSFD-DKMVRILCNDCGAVSEVQFHLIAHK 206
           L CPLC +    +    E      +L T+S     DK + I CN+C   +++      +K
Sbjct: 193 LRCPLCREEFAPLKVILEEFKNSNKLITISEKERLDKHLGIPCNNC---NQLPIEGRCYK 249

Query: 205 CHSCKSYNTRQ 173
           C  C  Y+  Q
Sbjct: 250 CTECVEYHLCQ 260

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>OE66_NPVLS (P89518) Occlusion-derived virus envelope protein E66 (ODV-E66)|
          Length = 631

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 RNHCTICEPSYRRRSLTESLVLHPVFPMPLTCHTPTWSRAG 369
           +N C +    Y  R LTESL LH   P+P T     W  AG
Sbjct: 129 QNTCIVLRDHYDLRELTESL-LHYYLPLP-TLSMGLWRTAG 167

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>ISPG_BUCAI (P57374) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 368

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 376 LACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCG 245
           +ACP CS+   D+     +L+  L  +S   D  ++  + N  G
Sbjct: 269 IACPTCSRQEFDVINTVNQLEKNLEDISTPIDVSIIGCVVNGIG 312

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>PAC2_PSES3 (P15558) Penicillin acylase 2 precursor (EC 3.5.1.11) (Penicillin|
           acylase II) (Penicillin amidase II) (Cephalosporin
           acylase II) [Contains: Penicillin acylase 2 small
           subunit (Penicillin acylase II small subunit);
           Penicillin acylase 2 large su
          Length = 773

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 256 CTICEPSYRRRSLTESLVLHPVF 324
           CT C P YR   + E LV  P F
Sbjct: 493 CTDCHPPYRAERIMERLVASPAF 515

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>Y2293_ARCFU (O27991) Hypothetical protein AF2293|
          Length = 68

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -2

Query: 379 QLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCG 245
           ++ CP+C        +  E    +    +  FD ++  ++C DCG
Sbjct: 2   EIECPICDDGKLHEVEVLEEKKGKFKRRNAEFDAEVYIVVCKDCG 46

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>SLIT2_RAT (Q9WVC1) Slit homolog 2 protein precursor (Slit-2) (Fragment)|
          Length = 766

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 183 LYDLQLWHLCAIK*NCTSDTAPQSLHNMRTI-LSSKEFDRVASSASSLSHAFDMSH 347
           L+ LQL  L A K NC    A Q LHN+  + L   +   VA    S   A    H
Sbjct: 375 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTFSALRAIQTMH 430

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>DEOC2_MESFL (Q6F0H8) Deoxyribose-phosphate aldolase 2 (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase 2) (Deoxyriboaldolase 2) (DERA
           2)
          Length = 212

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 328 WERLDAELATLSNSFDDKMVRILCNDC 248
           WE++++E   + NSF D +++++   C
Sbjct: 102 WEKVNSEFQKIRNSFKDIIIKVIFETC 128

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>FDEH_PSEPU (P09347) 5-exo-alcohol dehydrogenase (EC 1.1.1.-) (FDEH)|
          Length = 361

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 217 IAHKCHSCKSYNTRQI*SSEPWRDSTFF 134
           + H+CHSC       +    PW +STFF
Sbjct: 97  LCHRCHSC------TVLDETPWDNSTFF 118

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>SLIT2_MOUSE (Q9R1B9) Slit homolog 2 protein precursor (Slit-2) [Contains: Slit|
           homolog 2 protein N-product; Slit homolog 2 protein
           C-product]
          Length = 1521

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 183 LYDLQLWHLCAIK*NCTSDTAPQSLHNMRTI-LSSKEFDRVASSASSLSHAFDMSH 347
           L+ LQL  L A K NC    A Q LHN+  + L   +   VA    S   A    H
Sbjct: 371 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTFSALRAIQTMH 426

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>MTM1_MICAM (P50190) Modification methylase MamI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase MamI) (M.MamI)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 341 HVKGMGKTGCRTSDSVKLLRR*DGSHIVQ*LRGGIR 234
           H   +G  G  T D + L  R DG H +   RGG+R
Sbjct: 27  HAPLLGSAGNATVDELALAARFDGLHQLLYTRGGVR 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,669,767
Number of Sequences: 219361
Number of extensions: 1061520
Number of successful extensions: 3563
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result