ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 8e-62
2ref|XM_471232.1| Oryza sativa (japonica cultivar-group), predic... 244 3e-61
3gb|AY106094.1| Zea mays PCO115368 mRNA sequence 186 6e-44
4emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4,... 101 3e-18
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in ... 46 0.15
7gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, co... 42 2.3
8gb|AC107425.6| Homo sapiens 3 BAC RP11-497L23 (Roswell Park Canc... 42 2.3
9gb|AC098824.3| Homo sapiens BAC clone RP11-489G24 from 2, comple... 42 2.3
10gb|AC010135.3|AC010135 Homo sapiens BAC clone RP11-128D13 from Y... 42 2.3
11gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complet... 42 2.3
12gb|AC124947.10| Homo sapiens 12 BAC RP11-486A14 (Roswell Park Ca... 42 2.3
13gb|AC113315.8| Mus musculus chromosome 3, clone RP23-441B22, com... 42 2.3
14ref|XM_642357.1| Dictyostelium discoideum fused-like protein kin... 40 9.0
15ref|XM_859774.1| PREDICTED: Canis familiaris similar to NHL repe... 40 9.0
16ref|XM_544027.2| PREDICTED: Canis familiaris similar to NHL repe... 40 9.0
17ref|XM_803117.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.0
18ref|XM_811341.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.0
19ref|XM_645585.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 9.0
20gb|AC157576.4| Mus musculus chromosome 18, clone RP24-252J16, co... 40 9.0
21gb|AC144403.2| Felis catus clone RP86-60G24, complete sequence 40 9.0
22gb|AC093690.5| Homo sapiens BAC clone RP11-731I19 from 2, comple... 40 9.0
23ref|XM_694632.1| PREDICTED: Danio rerio similar to translocated ... 40 9.0
24ref|XM_694622.1| PREDICTED: Danio rerio similar to Nucleoprotein... 40 9.0
25dbj|AK028644.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 9.0
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
27gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, r... 40 9.0
28dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 9.0
29dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
30dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
31dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
32gb|AF218037.1|AF218037 Aeromonas salmonicida RTX protein (asx) g... 40 9.0
33dbj|AK103727.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
34emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chr... 40 9.0
35gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90... 40 9.0
36dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
37dbj|AP002777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
38dbj|AP001576.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 9.0

>dbj|AK067888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126H20, full
            insert sequence
          Length = 1606

 Score =  246 bits (124), Expect = 8e-62
 Identities = 217/248 (87%)
 Strand = Plus / Minus

                                                                        
Query: 204  cgctgcaaaggatcctgcttcgaaggaccgtttggagaaactttccccaaaacattcaaa 263
            |||| ||||||  |||| || |||||||||||||| |||||||| |||| ||||||||||
Sbjct: 1342 cgctacaaaggggcctgttttgaaggaccgtttggcgaaacttttcccagaacattcaaa 1283

                                                                        
Query: 264  gccttcatccgttgcagctctttaccttcctccactaggaggtgtattgctctcttctcc 323
            ||||||||||||||||||||||| |||||||||||||  | ||| ||||| || ||||||
Sbjct: 1282 gccttcatccgttgcagctctttcccttcctccactaataagtgaattgcccttttctcc 1223

                                                                        
Query: 324  agctcaatcgcatgcatgcttcgaccggctgctgagagtgtcctaagcattcgcatataa 383
            || ||||| ||||||||||||||| | || || ||||| | |||||||||||||||||||
Sbjct: 1222 agatcaattgcatgcatgcttcgatcagccgccgagagggacctaagcattcgcatataa 1163

                                                                        
Query: 384  ccctcctgggatgaccgatcacagttctccaaatatgtctgtaatcgatcatatctctca 443
            |||||||| | ||||||||||||| ||||||||||||||||||| |||| | ||||| ||
Sbjct: 1162 ccctcctgagttgaccgatcacagctctccaaatatgtctgtaaccgattaaatctcgca 1103

                    
Query: 444  ctccagta 451
             |||||||
Sbjct: 1102 ttccagta 1095



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 565  catttgtttcttcaggagatttag 588
            ||||||||| ||||||||||||||
Sbjct: 1011 catttgttttttcaggagatttag 988



to top

>ref|XM_471232.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score =  244 bits (123), Expect = 3e-61
 Identities = 201/227 (88%)
 Strand = Plus / Minus

                                                                        
Query: 225  gaaggaccgtttggagaaactttccccaaaacattcaaagccttcatccgttgcagctct 284
            |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1046 gaaggaccgtttggcgaaacttttcccagaacattcaaagccttcatccgttgcagctct 987

                                                                        
Query: 285  ttaccttcctccactaggaggtgtattgctctcttctccagctcaatcgcatgcatgctt 344
            || |||||||||||||  | ||| ||||| || |||||||| ||||| ||||||||||||
Sbjct: 986  ttcccttcctccactaataagtgaattgcccttttctccagatcaattgcatgcatgctt 927

                                                                        
Query: 345  cgaccggctgctgagagtgtcctaagcattcgcatataaccctcctgggatgaccgatca 404
            ||| | || || ||||| | ||||||||||||||||||||||||||| | ||||||||||
Sbjct: 926  cgatcagccgccgagagggacctaagcattcgcatataaccctcctgagttgaccgatca 867

                                                           
Query: 405  cagttctccaaatatgtctgtaatcgatcatatctctcactccagta 451
            ||| ||||||||||||||||||| |||| | ||||| || |||||||
Sbjct: 866  cagctctccaaatatgtctgtaaccgattaaatctcgcattccagta 820



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 565 catttgtttcttcaggagatttag 588
           ||||||||| ||||||||||||||
Sbjct: 736 catttgttttttcaggagatttag 713



to top

>gb|AY106094.1| Zea mays PCO115368 mRNA sequence
          Length = 662

 Score =  186 bits (94), Expect = 6e-44
 Identities = 187/218 (85%)
 Strand = Plus / Minus

                                                                       
Query: 234 tttggagaaactttccccaaaacattcaaagccttcatccgttgcagctctttaccttcc 293
           ||||| ||||| ||||| | |||||||||||||||||| || || |||||||| ||||||
Sbjct: 407 tttggggaaaccttcccaagaacattcaaagccttcattcgctggagctctttcccttcc 348

                                                                       
Query: 294 tccactaggaggtgtattgctctcttctccagctcaatcgcatgcatgcttcgaccggct 353
           |||| |||||| |||||||| || |||||||||||||| ||||||||| |||  || || 
Sbjct: 347 tccattaggagatgtattgcccttttctccagctcaattgcatgcatgtttctcccagca 288

                                                                       
Query: 354 gctgagagtgtcctaagcattcgcatataaccctcctgggatgaccgatcacagttctcc 413
           || || || | ||||||| |||||| |||||||||||||| |||  ||||||||||||||
Sbjct: 287 gccgaaagggacctaagctttcgcaaataaccctcctgggttgaatgatcacagttctcc 228

                                                 
Query: 414 aaatatgtctgtaatcgatcatatctctcactccagta 451
           |||||||||||||| |||| | |||||||| |||||||
Sbjct: 227 aaatatgtctgtaaccgattaaatctctcattccagta 190



to top

>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20,
             complete sequence
          Length = 138572

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                         
Query: 204   cgctgcaaaggatcctgcttcgaaggaccgtttggagaaactttccccaaaacattcaaa 263
             |||| ||||||  |||| || |||||||||||||| |||||||| |||| ||||||||||
Sbjct: 50531 cgctacaaaggggcctgttttgaaggaccgtttggcgaaacttttcccagaacattcaaa 50472

                                    
Query: 264   gccttcatccgttgcagctcttt 286
             |||||||||||||||||||||||
Sbjct: 50471 gccttcatccgttgcagctcttt 50449



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                         
Query: 373   ttcgcatataaccctcctgggatgaccgatcacagttctccaaatatgtctgtaatcgat 432
             ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 49544 ttcgcatataaccctcctgagttgaccgatcacagctctccaaatatgtctgtaaccgat 49485

                                
Query: 433   catatctctcactccagta 451
              | ||||| || |||||||
Sbjct: 49484 taaatctcgcattccagta 49466



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 285   ttaccttcctccactaggaggtgtattgctctcttctccagctcaatcgcatgcatgctt 344
             ||||||||||||||||  | ||| ||||| || |||||||| ||||| ||||||||||||
Sbjct: 49712 ttaccttcctccactaataagtgaattgcccttttctccagatcaattgcatgcatgctt 49653

                                         
Query: 345   cgaccggctgctgagagtgtcctaagca 372
             ||| | || || ||||| | ||||||||
Sbjct: 49652 cgatcagccgccgagagggacctaagca 49625



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 565   catttgtttcttcaggagatttag 588
             ||||||||| ||||||||||||||
Sbjct: 49382 catttgttttttcaggagatttag 49359



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                           
Query: 204     cgctgcaaaggatcctgcttcgaaggaccgtttggagaaactttccccaaaacattcaaa 263
               |||| ||||||  |||| || |||||||||||||| |||||||| |||| ||||||||||
Sbjct: 2434629 cgctacaaaggggcctgttttgaaggaccgtttggcgaaacttttcccagaacattcaaa 2434570

                                      
Query: 264     gccttcatccgttgcagctcttt 286
               |||||||||||||||||||||||
Sbjct: 2434569 gccttcatccgttgcagctcttt 2434547



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                           
Query: 373     ttcgcatataaccctcctgggatgaccgatcacagttctccaaatatgtctgtaatcgat 432
               ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 2433642 ttcgcatataaccctcctgagttgaccgatcacagctctccaaatatgtctgtaaccgat 2433583

                                  
Query: 433     catatctctcactccagta 451
                | ||||| || |||||||
Sbjct: 2433582 taaatctcgcattccagta 2433564



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                           
Query: 285     ttaccttcctccactaggaggtgtattgctctcttctccagctcaatcgcatgcatgctt 344
               ||||||||||||||||  | ||| ||||| || |||||||| ||||| ||||||||||||
Sbjct: 2433810 ttaccttcctccactaataagtgaattgcccttttctccagatcaattgcatgcatgctt 2433751

                                           
Query: 345     cgaccggctgctgagagtgtcctaagca 372
               ||| | || || ||||| | ||||||||
Sbjct: 2433750 cgatcagccgccgagagggacctaagca 2433723



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 565     catttgtttcttcaggagatttag 588
               ||||||||| ||||||||||||||
Sbjct: 2433480 catttgttttttcaggagatttag 2433457



to top

>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14,
             complete sequence
          Length = 190254

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 556   cagtttctgcatttgtttcttca 578
             |||||||||||||||||||||||
Sbjct: 79953 cagtttctgcatttgtttcttca 79975



to top

>gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, complete sequence
          Length = 157152

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 558   gtttctgcatttgtttcttca 578
             |||||||||||||||||||||
Sbjct: 22165 gtttctgcatttgtttcttca 22185



to top

>gb|AC107425.6| Homo sapiens 3 BAC RP11-497L23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 130297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   atataaccctcctgggatgac 398
             |||||||||||||||||||||
Sbjct: 75001 atataaccctcctgggatgac 75021



to top

>gb|AC098824.3| Homo sapiens BAC clone RP11-489G24 from 2, complete sequence
          Length = 157758

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 558   gtttctgcatttgtttcttca 578
             |||||||||||||||||||||
Sbjct: 40955 gtttctgcatttgtttcttca 40935



to top

>gb|AC010135.3|AC010135 Homo sapiens BAC clone RP11-128D13 from Y, complete sequence
          Length = 176951

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 466    ctgatctatgcatatcacctt 486
              |||||||||||||||||||||
Sbjct: 144306 ctgatctatgcatatcacctt 144326



to top

>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence
          Length = 165768

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   tccactaggaggtgtattgct 314
             |||||||||||||||||||||
Sbjct: 15556 tccactaggaggtgtattgct 15536



to top

>gb|AC124947.10| Homo sapiens 12 BAC RP11-486A14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 86999

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 242   aactttccccaaaacattcaa 262
             |||||||||||||||||||||
Sbjct: 47700 aactttccccaaaacattcaa 47680



to top

>gb|AC113315.8| Mus musculus chromosome 3, clone RP23-441B22, complete sequence
          Length = 187126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 558    gtttctgcatttgtttcttca 578
              |||||||||||||||||||||
Sbjct: 152456 gtttctgcatttgtttcttca 152476



to top

>ref|XM_642357.1| Dictyostelium discoideum fused-like protein kinase (DDB0229382),
            partial mRNA
          Length = 6744

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   tcttataattcaccatataa 38
            ||||||||||||||||||||
Sbjct: 4696 tcttataattcaccatataa 4715



to top

>ref|XM_859774.1| PREDICTED: Canis familiaris similar to NHL repeat containing 2,
            transcript variant 3 (LOC486897), mRNA
          Length = 2259

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  cagctcatttttctttggta 555
            ||||||||||||||||||||
Sbjct: 1224 cagctcatttttctttggta 1205



to top

>ref|XM_544027.2| PREDICTED: Canis familiaris similar to NHL repeat containing 2,
            transcript variant 1 (LOC486897), mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  cagctcatttttctttggta 555
            ||||||||||||||||||||
Sbjct: 1170 cagctcatttttctttggta 1151



to top

>ref|XM_803117.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504009.60) partial mRNA
          Length = 3405

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 548  ctttggtacagtttctgcat 567
            ||||||||||||||||||||
Sbjct: 2252 ctttggtacagtttctgcat 2233



to top

>ref|XM_811341.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507049.179) partial mRNA
          Length = 3402

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 548  ctttggtacagtttctgcat 567
            ||||||||||||||||||||
Sbjct: 2249 ctttggtacagtttctgcat 2230



to top

>ref|XM_645585.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (204.t00004)
            partial mRNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 544  ttttctttggtacagtttct 563
            ||||||||||||||||||||
Sbjct: 2908 ttttctttggtacagtttct 2889



to top

>gb|AC157576.4| Mus musculus chromosome 18, clone RP24-252J16, complete sequence
          Length = 164440

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   aaacattcaaagccttcatc 272
             ||||||||||||||||||||
Sbjct: 55042 aaacattcaaagccttcatc 55023



to top

>gb|AC144403.2| Felis catus clone RP86-60G24, complete sequence
          Length = 147664

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   cattcaaagccttcatccgt 275
             ||||||||||||||||||||
Sbjct: 70184 cattcaaagccttcatccgt 70165



to top

>gb|AC093690.5| Homo sapiens BAC clone RP11-731I19 from 2, complete sequence
          Length = 201467

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   atgtcctttctgcaatgtat 141
             ||||||||||||||||||||
Sbjct: 41755 atgtcctttctgcaatgtat 41736



to top

>ref|XM_694632.1| PREDICTED: Danio rerio similar to translocated promoter region (to
            activated MET oncogene) (LOC571076), mRNA
          Length = 4596

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  tctttggtacagtttctgca 566
            ||||||||||||||||||||
Sbjct: 3524 tctttggtacagtttctgca 3543



to top

>ref|XM_694622.1| PREDICTED: Danio rerio similar to Nucleoprotein TPR (LOC571067), mRNA
          Length = 3309

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  tctttggtacagtttctgca 566
            ||||||||||||||||||||
Sbjct: 2216 tctttggtacagtttctgca 2235



to top

>dbj|AK028644.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732423E21 product:unclassifiable, full
           insert sequence
          Length = 3171

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 aaacattcaaagccttcatc 272
           ||||||||||||||||||||
Sbjct: 706 aaacattcaaagccttcatc 725



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 311      tgctctcttctccagctcaatcgcatgcatgcttcg 346
                |||||| |||||||||||||| ||| || |||||||
Sbjct: 21428955 tgctctgttctccagctcaatggcaagcttgcttcg 21428920



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 457     tttggttgcctgatctatgc 476
               ||||||||||||||||||||
Sbjct: 3406448 tttggttgcctgatctatgc 3406467



to top

>gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, region 96E-96F, BAC clone
             BACR03O03, complete sequence
          Length = 132168

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 416   atatgtctgtaatcgatcatatctctca 443
             |||| |||||||||||| ||||||||||
Sbjct: 44890 atatctctgtaatcgatgatatctctca 44917



to top

>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 448     agtaaggattttggttgcct 467
               ||||||||||||||||||||
Sbjct: 1011570 agtaaggattttggttgcct 1011589



to top

>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0069P02
          Length = 163033

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    tttggttgcctgatctatgc 476
              ||||||||||||||||||||
Sbjct: 122380 tttggttgcctgatctatgc 122399



to top

>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1210_A07
          Length = 131394

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 311   tgctctcttctccagctcaatcgcatgcatgcttcg 346
             |||||| |||||||||||||| ||| || |||||||
Sbjct: 46060 tgctctgttctccagctcaatggcaagcttgcttcg 46025



to top

>dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1058_F03
          Length = 150486

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   tttggttgcctgatctatgc 476
             ||||||||||||||||||||
Sbjct: 74929 tttggttgcctgatctatgc 74948



to top

>gb|AF218037.1|AF218037 Aeromonas salmonicida RTX protein (asx) gene, complete cds
          Length = 14660

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  tgcagctctttaccttcctc 295
            ||||||||||||||||||||
Sbjct: 1039 tgcagctctttaccttcctc 1020



to top

>dbj|AK103727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138D21, full
            insert sequence
          Length = 1738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 311  tgctctcttctccagctcaatcgcatgcatgcttcg 346
            |||||| |||||||||||||| ||| || |||||||
Sbjct: 1273 tgctctgttctccagctcaatggcaagcttgcttcg 1238



to top

>emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chromosome 6, complete
             sequence
          Length = 201512

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 542   atttttctttggtacagtttctgcattt 569
             |||||||||||||||| |||||||||||
Sbjct: 44855 atttttctttggtaca-tttctgcattt 44881



to top

>gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90 of 118 of the
             complete sequence
          Length = 188285

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 416   atatgtctgtaatcgatcatatctctca 443
             |||| |||||||||||| ||||||||||
Sbjct: 55404 atatctctgtaatcgatgatatctctca 55431



to top

>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete
            sequence
          Length = 185984

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  tgtattgctctcttctccag 325
            ||||||||||||||||||||
Sbjct: 4359 tgtattgctctcttctccag 4378



to top

>dbj|AP002777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640G3, complete
             sequence
          Length = 169515

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tgtattgctctcttctccag 325
             ||||||||||||||||||||
Sbjct: 87132 tgtattgctctcttctccag 87151



to top

>dbj|AP001576.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1F5
          Length = 105199

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 542   atttttctttggtacagtttctgcattt 569
             |||||||||||||||| |||||||||||
Sbjct: 57419 atttttctttggtaca-tttctgcattt 57393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,616,339
Number of Sequences: 3902068
Number of extensions: 5616339
Number of successful extensions: 101547
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 101395
Number of HSP's gapped (non-prelim): 153
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top