ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal14e22 |
|---|---|
| Clone Library Name | barley_pub |
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 128 bits (321), Expect(2) = 1e-32 Identities = 60/74 (81%), Positives = 66/74 (89%) Frame = -2 Query: 452 KVIGENVXGKVLSTATAEYSGRTYYQFELEPPHIFITATAAGNRLYLFSVTANGLQWKRH 273 +VIGENV GKVLS+ AE+ GR YYQFELEPPH+ ITATAAGNRLYLFSVT NGLQWKRH Sbjct: 201 EVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRH 260 Query: 272 YKDLKQIAESFRVV 231 YKDLK+IA SFR+V Sbjct: 261 YKDLKRIASSFRIV 274 Score = 30.8 bits (68), Expect(2) = 1e-32 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = -1 Query: 498 EKIGTPXKVINAFGPE 451 E IG P KVINAFGPE Sbjct: 186 ENIGQPAKVINAFGPE 201
>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor| (P19) Length = 229 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -2 Query: 425 KVLSTATAEYSGRTYYQFELEP--PHIFITATAAGNRLYLFSVTANGLQWKRHYKDLKQI 252 KV+S + +G+ YY +E++ H IT T + NRLY V A +W R + L + Sbjct: 160 KVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHL 219 Query: 251 AESFRVV 231 +SF+ V Sbjct: 220 RDSFKTV 226
>TL26_ARATH (P82538) Thylakoid lumenal 25.6 kDa protein, chloroplast precursor| Length = 230 Score = 33.9 bits (76), Expect = 0.25 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Frame = -2 Query: 461 LDRKVIGE-NVXGKVLSTATAEYSGRTYYQFELEPP------HIFITATAAGNRLYLFSV 303 L +KV+ N ++ + + G+TYYQFE H T T Y + Sbjct: 146 LIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTT 205 Query: 302 TANGLQWKRHYKDLKQIAESFRV 234 AN +W++ L + +SF++ Sbjct: 206 GANERRWEKMKDRLHTVVDSFKI 228
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 33.5 bits (75), Expect = 0.32 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KRH 273 +L T+T E G+ YY + H ITAT G +LY+ A +W K Sbjct: 192 ILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 251 Query: 272 YKDLKQIAESFRV 234 K ++ A SF V Sbjct: 252 RKFVENAATSFSV 264
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 32.3 bits (72), Expect = 0.72 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFEL---------EPPHIFITATAAGNRLYLFSVTANGLQWKRHY 270 VL T+TAE G+ YY + H +TAT +LY+ A +W + Sbjct: 193 VLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRW---F 249 Query: 269 KDLKQIAES 243 K K+ E+ Sbjct: 250 KGAKKFVEN 258
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 32.0 bits (71), Expect = 0.94 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQWKRHY 270 +L T+T G+ YY + H+ ITAT + +LY+ A +W + Sbjct: 192 ILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRW---F 248 Query: 269 KDLKQIAES 243 K K+ ES Sbjct: 249 KGAKKFVES 257
>ZG5_XENLA (P18725) Gastrula zinc finger protein 5-1 (XLCGF5.1)| Length = 445 Score = 31.2 bits (69), Expect = 1.6 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +3 Query: 312 QVEPIPSSRSCDEDMGWFQLELVVSSSGVLCCGCGQNLPXH 434 Q + + ++ SC D G + SG +CC CG + H Sbjct: 157 QEKRVATNSSCQSDTGHVDCSVGSEPSGFICCKCGDSFAHH 197
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQWKRHY 270 VL T++AE G+ YY + H ITAT +LY+ A +W + Sbjct: 192 VLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRW---F 248 Query: 269 KDLKQIAES 243 K K+ E+ Sbjct: 249 KGAKKFVEN 257
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KRH 273 +L +++ E G+ YY + H ITAT G +LY+ A +W K Sbjct: 190 ILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 249 Query: 272 YKDLKQIAESFRV 234 K ++ A SF V Sbjct: 250 RKFVESAATSFSV 262
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 29.3 bits (64), Expect = 6.1 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KRH 273 +L T + G+ YY + H ITAT G +LY+ A +W K Sbjct: 144 ILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 203 Query: 272 YKDLKQIAESFRV 234 K +++ A SF V Sbjct: 204 NKFVEKAATSFSV 216
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 29.3 bits (64), Expect = 6.1 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%) Frame = -2 Query: 422 VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KRH 273 +L T + G+ YY + H ITAT G +LY+ A +W K Sbjct: 187 ILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGA 246 Query: 272 YKDLKQIAESFRV 234 K +++ A SF V Sbjct: 247 NKFVEKAATSFSV 259
>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6| Length = 3519 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -2 Query: 458 DRKVIGENVXGKVLS-TATAEYSGRTYYQFELEPPHIFITATAAGNRLYLFSVTANGLQ 285 D K E+V G +L+ TA+A SGR Y F LE P + + TA + L + L+ Sbjct: 1817 DPKRAPESVAGYLLTGTASAVLSGRISYTFGLEGPAVTVD-TACSSSLVALHLAVQALR 1874 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,734,836 Number of Sequences: 219361 Number of extensions: 1413611 Number of successful extensions: 3106 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3104 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
