| Clone Name | rbaal14d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017039.1| Zea mays clone EL01N0202F08.c mRNA sequence Length = 486 Score = 143 bits (72), Expect = 5e-31 Identities = 123/140 (87%) Strand = Plus / Minus Query: 219 gccttggccttcagctccttcagggccttttgctcatccttcttcttctggaggtatgcc 278 ||||||||||||||||||||||| ||||||| |||||| ||||||||||| | || || Sbjct: 201 gccttggccttcagctccttcagcgccttttcctcatctttcttcttctgcaaataagca 142 Query: 279 aggtcattctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttc 338 || ||| |||||||||| ||||||| | ||||||||| | ||| ||||||||||||||| Sbjct: 141 agatcactctcgtcgtactccttcttgtcgaccttgggcgccttcagcggcttggccttc 82 Query: 339 cctccttgcttcgacatggc 358 |||||||||||||||||||| Sbjct: 81 cctccttgcttcgacatggc 62
>gb|AY108524.1| Zea mays PCO149369 mRNA sequence Length = 627 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Minus Query: 219 gccttggccttcagctccttcagggccttttgctcatccttcttcttctggaggtatgcc 278 ||||||||||||||||||||||| ||||||| |||||| || |||||||| | || || Sbjct: 319 gccttggccttcagctccttcagcgccttttcctcatcttttttcttctgcaaataagca 260 Query: 279 aggtcattctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttc 338 || ||| |||||||||| ||||||| | ||||||||| | ||| ||||||||||||||| Sbjct: 259 agatcactctcgtcgtactccttcttgtcgaccttgggcgccttcagcggcttggccttc 200 Query: 339 cctccttgcttcgacatggc 358 |||||||||||||||||||| Sbjct: 199 cctccttgcttcgacatggc 180
>gb|BT016830.1| Zea mays clone Contig663 mRNA sequence Length = 531 Score = 133 bits (67), Expect = 5e-28 Identities = 164/196 (83%), Gaps = 3/196 (1%) Strand = Plus / Minus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 |||||||||| ||||| ||||||||||| || || | | ||| |||||||| |||| Sbjct: 279 ctcatttctttccacttttcttcagacccgagcccccaatcgcgcccttctgt---gcct 223 Query: 223 tggccttcagctccttcagggccttttgctcatccttcttcttctggaggtatgccaggt 282 ||||||| ||||||||||| || |||| |||||| ||||||||||| || ||||| || | Sbjct: 222 tggccttaagctccttcagtgctttttcctcatctttcttcttctgcagatatgcaagat 163 Query: 283 cattctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttccctc 342 | |||||||||| ||||||| | || |||||| | ||| ||||||||||||||||||| Sbjct: 162 ccgtctcgtcgtactccttcttgtcggccttgggcgccttcagcggcttggccttccctc 103 Query: 343 cttgcttcgacatggc 358 |||||||||||||||| Sbjct: 102 cttgcttcgacatggc 87
>dbj|AK065448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020E03, full insert sequence Length = 1940 Score = 133 bits (67), Expect = 5e-28 Identities = 96/106 (90%) Strand = Plus / Minus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 ||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| || |||| Sbjct: 1727 ctcatttcttcccgctcttcttcagaccagagcctcccagtgcacccttctgtcctgcct 1668 Query: 223 tggccttcagctccttcagggccttttgctcatccttcttcttctg 268 ||||||| ||||||||||| ||||||| |||||| ||||||||||| Sbjct: 1667 tggccttaagctccttcagtgccttttcctcatctttcttcttctg 1622 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 287 ctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttccctccttg 346 ||||||||| ||||||| || |||||| | |||||| |||||||||||||||||||| Sbjct: 164 ctcgtcgtactccttcttctcggccttgggcgccttgaggggcttggccttccctccttg 105 Query: 347 cttcgacatggcggacgggcccggcgggggcgag 380 |||||||||||| ||| || ||||| ||||||| Sbjct: 104 cttcgacatggctgaccggatcggcgagggcgag 71
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 1e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 ||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| || |||| Sbjct: 28255998 ctcatttcttcccgctcttcttcagaccagagcctcccagtgcacccttctgtcctgcct 28256057 Query: 223 tggccttcagctccttcagggcct 246 ||||||| ||||||||||| |||| Sbjct: 28256058 tggccttaagctccttcagtgcct 28256081 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 287 ctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttccctcct 344 ||||||||| ||||||| || |||||| | |||||| |||||||||||||||||| Sbjct: 28257662 ctcgtcgtactccttcttctcggccttgggcgccttgaggggcttggccttccctcct 28257719
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 105 bits (53), Expect = 1e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 ||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| || |||| Sbjct: 54027 ctcatttcttcccgctcttcttcagaccagagcctcccagtgcacccttctgtcctgcct 54086 Query: 223 tggccttcagctccttcagggcct 246 ||||||| ||||||||||| |||| Sbjct: 54087 tggccttaagctccttcagtgcct 54110 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 287 ctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttccctcct 344 ||||||||| ||||||| || |||||| | |||||| |||||||||||||||||| Sbjct: 55691 ctcgtcgtactccttcttctcggccttgggcgccttgaggggcttggccttccctcct 55748
>gb|AY109688.1| Zea mays CL339_1 mRNA sequence Length = 1928 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 286 tctcgtcgtagtccttctcggcgaccttggcctgcttgagcggcttggccttccctcctt 345 |||||||||| ||||||| | || |||||| | ||| |||||||||||||||||||||| Sbjct: 1427 tctcgtcgtactccttcttgtcggccttgggcgccttcagcggcttggccttccctcctt 1368 Query: 346 gcttcgacatggc 358 ||||||||||||| Sbjct: 1367 gcttcgacatggc 1355
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 6e-06 Identities = 86/105 (81%) Strand = Plus / Minus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 ||||||| || ||||| ||||| ||||| | ||| | || || |||||||| | |||| Sbjct: 3219517 ctcattttttgccacttttcttgagaccggcgcctccaagtgcgcccttctgcgccgcct 3219458 Query: 223 tggccttcagctccttcagggccttttgctcatccttcttcttct 267 ||||| ||||||||||||||||||| | ||| || |||||||||| Sbjct: 3219457 tggccctcagctccttcagggccttctcctcctctttcttcttct 3219413
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 60.0 bits (30), Expect = 6e-06 Identities = 86/105 (81%) Strand = Plus / Minus Query: 163 ctcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcct 222 ||||||| || ||||| ||||| ||||| | ||| | || || |||||||| | |||| Sbjct: 91704 ctcattttttgccacttttcttgagaccggcgcctccaagtgcgcccttctgcgccgcct 91645 Query: 223 tggccttcagctccttcagggccttttgctcatccttcttcttct 267 ||||| ||||||||||||||||||| | ||| || |||||||||| Sbjct: 91644 tggccctcagctccttcagggccttctcctcctctttcttcttct 91600
>ref|NM_101396.2| Arabidopsis thaliana unknown protein AT1G15270 mRNA, complete cds Length = 452 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 210 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 151 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 150 tcgtattccttct 138
>gb|AY046003.1| Arabidopsis thaliana unknown protein (At1g15270) mRNA, complete cds Length = 444 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 201 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 142 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 141 tcgtattccttct 129
>emb|AJ843980.1| Plantago major mRNA for hypothetical protein Length = 454 Score = 50.1 bits (25), Expect = 0.006 Identities = 83/102 (81%), Gaps = 3/102 (2%) Strand = Plus / Minus Query: 164 tcatttcttcccactcttcttcagaccagatcctnccagcgcacccttctggccagcctt 223 |||||| || ||||||||||||||||||| ||| | || || || ||||| |||||| Sbjct: 273 tcattttttgccactcttcttcagaccagcacctccaagagctcctttctg---agcctt 217 Query: 224 ggccttcagctccttcagggccttttgctcatccttcttctt 265 ||||| |||||||| || ||||||| |||||| || ||||| Sbjct: 216 tgccttaagctccttgagagccttttcctcatcttttttctt 175
>gb|AY093387.1| Arabidopsis thaliana unknown protein (At1g15270) mRNA, complete cds Length = 307 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 128 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 69 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 68 tcgtattccttct 56
>gb|AY062704.1| Arabidopsis thaliana Unknown protein (At1g15270; F9L1.21) mRNA, complete cds Length = 389 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 204 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 145 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 144 tcgtattccttct 132
>gb|AF336925.1| Arabidopsis thaliana clone C00250 (e) unknown protein (At1g15270) mRNA, complete cds Length = 195 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 128 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 69 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 68 tcgtattccttct 56
>emb|BX818071.1|CNS0ACMY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZA12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 350 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 172 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 113 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 112 tcgtattccttct 100
>gb|AY086188.1| Arabidopsis thaliana clone 22166 mRNA, complete sequence Length = 409 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctggaggtatgccaggtcattctcg 290 ||||| || |||||||||| |||||| ||||||||||| | || || | |||| ||||| Sbjct: 210 agctctttaagggccttttcctcatctttcttcttctgaatgttagctaagtcagtctcg 151 Query: 291 tcgtagtccttct 303 ||||| ||||||| Sbjct: 150 tcgtattccttct 138
>ref|NM_190396.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2040 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 388 agctggagccgcgacgacggtggggcg 414 ||||||||||||||||||||| ||||| Sbjct: 2011 agctggagccgcgacgacggttgggcg 2037
>ref|XM_447815.1| Candida glabrata CBS138, CAGL0J02530g partial mRNA Length = 2265 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcctt 337 |||||||||||||| |||||||||||| Sbjct: 1678 cttggcctgcttgaccggcttggcctt 1652 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 1768 cttggcctgcttgaccggcttggcct 1743 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 1750 cttggcctgcttgaccggcttggcct 1725 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 1732 cttggcctgcttgaccggcttggcct 1707 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 1714 cttggcctgcttgaccggcttggcct 1689 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 1696 cttggcctgcttgaccggcttggcct 1671
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcctt 337 |||||||||||||| |||||||||||| Sbjct: 248613 cttggcctgcttgaccggcttggcctt 248639 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 248595 cttggcctgcttgaccggcttggcct 248620 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 248577 cttggcctgcttgaccggcttggcct 248602 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 248559 cttggcctgcttgaccggcttggcct 248584 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 248541 cttggcctgcttgaccggcttggcct 248566 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 cttggcctgcttgagcggcttggcct 336 |||||||||||||| ||||||||||| Sbjct: 248523 cttggcctgcttgaccggcttggcct 248548
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 388 agctggagccgcgacgacggtggggcg 414 ||||||||||||||||||||| ||||| Sbjct: 35241899 agctggagccgcgacgacggttgggcg 35241925
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 388 agctggagccgcgacgacggtggggcg 414 ||||||||||||||||||||| ||||| Sbjct: 120983 agctggagccgcgacgacggttgggcg 121009
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 388 agctggagccgcgacgacggtggggcg 414 ||||||||||||||||||||| ||||| Sbjct: 5760 agctggagccgcgacgacggttgggcg 5786
>dbj|AK061414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D05, full insert sequence Length = 1050 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 388 agctggagccgcgacgacggtggggcg 414 ||||||||||||||||||||| ||||| Sbjct: 765 agctggagccgcgacgacggttgggcg 791
>emb|BX818255.1|CNS0ACF6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZA12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 360 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 231 agctccttcagggccttttgctcatccttcttcttctg 268 ||||| || |||||||||| |||||| ||||||||||| Sbjct: 172 agctctttaagggccttttcctcatctttcttcttctg 135
>emb|CT025521.10| Mouse DNA sequence from clone RP23-337J16 on chromosome 16, complete sequence Length = 200017 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 cttcagctccttcagggccttt 248 |||||||||||||||||||||| Sbjct: 105986 cttcagctccttcagggccttt 105965
>gb|BT009442.1| Triticum aestivum clone wlmk4.pk0025.f7:fis, full insert mRNA sequence Length = 1666 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gagcggcttggccttccctcc 343 ||||||||||||||||||||| Sbjct: 58 gagcggcttggccttccctcc 38
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 gggcccggcgggggcgagaaa 383 ||||||||||||||||||||| Sbjct: 1116375 gggcccggcgggggcgagaaa 1116395
>gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E6, complete sequence Length = 163120 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 cttcccactcttcttcagacc 190 ||||||||||||||||||||| Sbjct: 71535 cttcccactcttcttcagacc 71515
>gb|AC084523.1|CBRG20H14 Caenorhabditis briggsae cosmid G20H14, complete sequence Length = 36970 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tttctgggcattacgaatggg 154 ||||||||||||||||||||| Sbjct: 25897 tttctgggcattacgaatggg 25877
>gb|DQ242507.1| Myxococcus xanthus DK 1622 PilG (pilG), PilH (pilH), PilI (pilI), PilD (pilD), PilS2 (pilS2), PilR2 (pilR2), PilM (pilM), PilN (pilN), PilO (pilO), PilP (pilP), and PilQ (pilQ) genes, complete cds; and unknown gene Length = 13124 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gctcatccttcttcttctgg 269 |||||||||||||||||||| Sbjct: 1010 gctcatccttcttcttctgg 991
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0015A05, complete sequence Length = 127330 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gcgagaaaccctagctggag 395 |||||||||||||||||||| Sbjct: 28456 gcgagaaaccctagctggag 28437
>gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, complete sequence Length = 182194 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 27895 agccttggctttcagctccttcag 27872
>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence Length = 215114 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 96136 agccttggctttcagctccttcag 96159
>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence Length = 166567 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 123030 agccttggctttcagctccttcag 123007
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tggcctgcttgagcggcttg 332 |||||||||||||||||||| Sbjct: 4658982 tggcctgcttgagcggcttg 4658963
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tggcctgcttgagcggcttg 332 |||||||||||||||||||| Sbjct: 4610904 tggcctgcttgagcggcttg 4610885
>gb|AC101902.9| Mus musculus chromosome 1, clone RP24-147M23, complete sequence Length = 223784 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 ccttcagctccttcagggcctttt 249 |||||||||||||||| ||||||| Sbjct: 118873 ccttcagctccttcagtgcctttt 118896
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgaccttggcctgcttgagc 326 |||||||||||||||||||| Sbjct: 3741144 cgaccttggcctgcttgagc 3741163
>gb|AC099593.6| Mus musculus chromosome 10, clone RP23-447D24, complete sequence Length = 176068 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tggccttccctccttgcttc 350 |||||||||||||||||||| Sbjct: 121251 tggccttccctccttgcttc 121232
>gb|AC107859.7| Mus musculus chromosome 15, clone RP23-19C9, complete sequence Length = 208355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ccttggccttcagctccttc 239 |||||||||||||||||||| Sbjct: 143055 ccttggccttcagctccttc 143036
>emb|AL365318.33| Human DNA sequence from clone RP11-159M11 on chromosome 1 Contains a novel gene and the 3' end of the SLC22A15 gene for solute carrier family 22 (organic cation transporter), member 15, complete sequence Length = 99575 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||||||||||||| |||| Sbjct: 56841 agccttggccttcagctccatcag 56818
>emb|AL355303.16| Human DNA sequence from clone RP11-445P17 on chromosome 10 Contains the 5' end of the gene for a novel protein similar to aldo-keto reductase, the AKR1C4 gene for aldo-keto reductase family 1 member C4, a novel gene, an aldo-keto reductase pseudogene, a ribosomal protein L26 (RPL26) pseudogene, an ADP-ribosylation factor-like 4 (ARL4) pseudogene,. a novel gene and a CpG island, complete sequence Length = 145692 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 18968 agccttggctttcagctccttcag 18991
>emb|AL009177.1|HS365E2 Human DNA sequence from clone RP3-365E2 on chromosome 6p22.3-24.1, complete sequence Length = 137730 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||||||||||||| |||| Sbjct: 53400 agccttggccttcagctccatcag 53377
>gb|AC078923.12| Homo sapiens 12 BAC RP11-699I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152805 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 cttggccttccctccttgct 348 |||||||||||||||||||| Sbjct: 136267 cttggccttccctccttgct 136248
>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09, complete sequence Length = 159502 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagccgcgacgacggtgggg 412 |||||||||||||||||||| Sbjct: 131251 gagccgcgacgacggtgggg 131232
>emb|AJ719356.1| Gallus gallus mRNA for hypothetical protein, clone 1j12 Length = 4716 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tcttcccactcttcttcaga 188 |||||||||||||||||||| Sbjct: 3865 tcttcccactcttcttcaga 3846
>dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, complete sequences Length = 152092 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 40003 agccttggctttcagctccttcag 39980
>dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, complete sequences Length = 105898 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 44378 agccttggctttcagctccttcag 44355
>dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, complete sequences Length = 146625 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 64392 agccttggctttcagctccttcag 64415
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgaccttggcctgcttgagc 326 |||||||||||||||||||| Sbjct: 1706924 cgaccttggcctgcttgagc 1706905
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 21933958 agccttggctttcagctccttcag 21933935 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 21654794 agccttggctttcagctccttcag 21654817
>gb|AC078874.13| Homo sapiens 12 BAC RP11-781C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166450 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 8809 agccttggctttcagctccttcag 8832
>gb|AE011958.1| Xanthomonas axonopodis pv. citri str. 306, section 336 of 469 of the complete genome Length = 11713 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgaccttggcctgcttgagc 326 |||||||||||||||||||| Sbjct: 8654 cgaccttggcctgcttgagc 8673
>gb|AC111197.4| Homo sapiens BAC clone RP11-589G9 from 4, complete sequence Length = 58075 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cagactcatttcttcccact 178 |||||||||||||||||||| Sbjct: 27425 cagactcatttcttcccact 27406
>gb|AC093900.3| Homo sapiens BAC clone RP11-730E1 from 4, complete sequence Length = 152581 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||||||||||||| |||| Sbjct: 121176 agccttggccttcagctccatcag 121199
>emb|CR523542.1| Gallus gallus finished cDNA, clone ChEST866g16 Length = 1245 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tcttcccactcttcttcaga 188 |||||||||||||||||||| Sbjct: 299 tcttcccactcttcttcaga 280
>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228043 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tggccttccctccttgcttc 350 |||||||||||||||||||| Sbjct: 70413 tggccttccctccttgcttc 70394
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagccgcgacgacggtgggg 412 |||||||||||||||||||| Sbjct: 32361668 gagccgcgacgacggtgggg 32361649
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gcgagaaaccctagctggag 395 |||||||||||||||||||| Sbjct: 2543570 gcgagaaaccctagctggag 2543551
>gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complete sequence Length = 152573 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||||||||||||| |||| Sbjct: 126132 agccttggccttcagctccatcag 126155
>gb|AF245168.1|AF245168 Penicillium citrinum vacuolar serine protease mRNA, partial cds Length = 1139 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cccttctggccagccttggccttc 230 ||||||| |||||||||||||||| Sbjct: 410 cccttcttgccagccttggccttc 387
>gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y, complete sequence Length = 166041 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 gccttcagctccttcagggccttt 248 |||||||||||||||||| ||||| Sbjct: 155578 gccttcagctccttcaggtccttt 155601
>gb|AY924209.1| Uncultured bacterium Ca-binding protein and hypothetical protein genes, complete cds Length = 4919 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acgggcccggcgggggcgag 380 |||||||||||||||||||| Sbjct: 2435 acgggcccggcgggggcgag 2454
>gb|AC018667.7| Homo sapiens BAC clone RP11-10J9 from 2, complete sequence Length = 91377 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 60034 agccttggctttcagctccttcag 60011
>gb|AC107066.2| Homo sapiens BAC clone RP11-2M10 from 2, complete sequence Length = 113596 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 60295 agccttggctttcagctccttcag 60318
>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence Length = 202354 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 agccttggccttcagctccttcag 241 ||||||||| |||||||||||||| Sbjct: 79796 agccttggctttcagctccttcag 79773
>dbj|AK073253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023F07, full insert sequence Length = 1637 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gcgagaaaccctagctggag 395 |||||||||||||||||||| Sbjct: 202 gcgagaaaccctagctggag 221
>emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0315F07, complete sequence Length = 73187 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagccgcgacgacggtgggg 412 |||||||||||||||||||| Sbjct: 68657 gagccgcgacgacggtgggg 68638
>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete sequence Length = 63554 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagccgcgacgacggtgggg 412 |||||||||||||||||||| Sbjct: 23381 gagccgcgacgacggtgggg 23362
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgaccttggcctgcttgagc 326 |||||||||||||||||||| Sbjct: 1730484 cgaccttggcctgcttgagc 1730465
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 tcgtcgtagtccttctcggc 307 |||||||||||||||||||| Sbjct: 2391121 tcgtcgtagtccttctcggc 2391140
>emb|AL805897.13| Mouse DNA sequence from clone RP23-63D8 on chromosome 4, complete sequence Length = 231989 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tctggccagccttggccttc 230 |||||||||||||||||||| Sbjct: 71020 tctggccagccttggccttc 71039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,271,193 Number of Sequences: 3902068 Number of extensions: 4271193 Number of successful extensions: 92403 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91888 Number of HSP's gapped (non-prelim): 515 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)