ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DADA_KLEAE (O30745) D-amino acid dehydrogenase small subunit (EC... 33 0.18
2ATG1_EMENI (Q5BCU8) Serine/threonine-protein kinase atg1 (EC 2.7... 29 2.7
3HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1) 25 7.7
4CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel al... 28 7.7
5DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A 28 7.7
6YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3 28 7.7
7DADA_SALTY (Q8ZP17) D-amino acid dehydrogenase small subunit (EC... 28 7.7
8DADA_SALTI (Q8Z687) D-amino acid dehydrogenase small subunit (EC... 28 7.7
9VRP1_YEAST (P37370) Verprolin 28 7.7

>DADA_KLEAE (O30745) D-amino acid dehydrogenase small subunit (EC 1.4.99.1)|
          Length = 432

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 294 VSETKSDAAAVDSQPGAAPNESPSAVNNGQLSPG 193
           +S+   D   +D QPG  P E  SA N GQ+SPG
Sbjct: 19  LSQAGHDVTVIDRQPG--PAEETSAANAGQISPG 50



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>ATG1_EMENI (Q5BCU8) Serine/threonine-protein kinase atg1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 935

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 169 KQLPPSXVPPSPRTIQHSHC--NQSVSGKH 86
           KQ+PP+  PP P  + H+     Q + G+H
Sbjct: 419 KQIPPAAAPPRPEAVSHATAPGRQELIGRH 448



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>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)|
          Length = 401

 Score = 25.0 bits (53), Expect(2) = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 290 LKPNQMPPQ*TANPVRPPMSRHP 222
           + P   PP   A P  PP++ HP
Sbjct: 48  VSPQPAPPSPPAAPCLPPLAHHP 70



 Score = 21.2 bits (43), Expect(2) = 7.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 175 HLKQLPPSXVPPSPRTIQH 119
           HL   PP   PP P   QH
Sbjct: 71  HLPPHPPPPPPPPPPPPQH 89



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>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.3)
            (Ca(v)3.3)
          Length = 2223

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 135  GDGGTXEGGSCFRCTSP 185
            G GG  EGG C RC SP
Sbjct: 1780 GGGGDTEGGLCRRCYSP 1796



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>DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A|
          Length = 1571

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 291 SETKSDAAAVDSQPGAAPNESPSAVNNGQLSPGAS 187
           S T S A++  S PG  P  +PSA      +PGA+
Sbjct: 174 SSTSSSASSTSSHPGGRPTTAPSAA----ATPGAA 204



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>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 261 DSQPGAAPNESPSAVNNGQLSPGA 190
           D QPGA  N+ PS  N    +PGA
Sbjct: 144 DGQPGAPGNKGPSGPNGNPGAPGA 167



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>DADA_SALTY (Q8ZP17) D-amino acid dehydrogenase small subunit (EC 1.4.99.1)|
          Length = 432

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 294 VSETKSDAAAVDSQPGAAPNESPSAVNNGQLSPG 193
           +S+   D   +D + G  P +  SA N GQ+SPG
Sbjct: 19  LSQAGHDVTVIDRESG--PAQETSAANAGQISPG 50



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>DADA_SALTI (Q8Z687) D-amino acid dehydrogenase small subunit (EC 1.4.99.1)|
          Length = 432

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 294 VSETKSDAAAVDSQPGAAPNESPSAVNNGQLSPG 193
           +S+   D   +D + G  P +  SA N GQ+SPG
Sbjct: 19  LSQAGHDVTVIDRESG--PAQETSAANAGQISPG 50



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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 291 SETKSDAAAVDSQPGAAPNESPSAVNNGQLSPGASXVKCT*SSSLPP 151
           S   S +A+    PGA P+ +   + N  LSP A  V    SSS PP
Sbjct: 111 STKPSPSASAPPIPGAVPSVAAPPIPNAPLSP-APAVPSIPSSSAPP 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,293,102
Number of Sequences: 219361
Number of extensions: 679385
Number of successful extensions: 2411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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