>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 48.5 bits (114), Expect(2) = 1e-09
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = -1

Query: 340 PALRLECPKEGQVISSIKFASFGTPSGTCGSYSHGECSSSQA 215
           P   L+C   GQ ISSIKFASFGTP G CG++  G C + ++
Sbjct: 753 PKAHLKCAP-GQKISSIKFASFGTPEGVCGNFQQGSCHAPRS 793



 Score = 31.2 bits (69), Expect(2) = 1e-09
 Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 153 KNFG-DPCRGVTKSLVVEAACS 91
           +NFG DPCR V K L VEA CS
Sbjct: 814 ENFGGDPCRNVLKKLSVEAICS 835

>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 50.8 bits (120), Expect(2) = 2e-09
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = -1

Query: 340 PALRLECPKEGQVISSIKFASFGTPSGTCGSYSHGECSSSQA 215
           P + L C   GQ +S IKFASFGTP GTCGS+S G C + ++
Sbjct: 745 PKVHLSCDP-GQKMSKIKFASFGTPQGTCGSFSEGSCHAHKS 785



 Score = 28.1 bits (61), Expect(2) = 2e-09
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 144 GDPCRGVTKSLVVEAAC 94
           GDPC G  K L VEA C
Sbjct: 815 GDPCPGTMKKLAVEAIC 831

>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = -1

Query: 331 RLECPKEGQVISSIKFASFGTPSGTCGSYSHGECSSSQ 218
           ++E     + IS++KFASFG PSG CGS++ G C  ++
Sbjct: 747 KVELSCNNRPISAVKFASFGNPSGQCGSFAAGSCEGAK 784

>FOS_HUMAN (P01100) Proto-oncogene protein c-fos (Cellular oncogene fos)|
           (G0/G1 switch regulatory protein 7)
          Length = 380

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 277 FGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSC 98
           FG P+ + G+YS      +     AQ   RRG+  Q +   +E RR ++R   K     C
Sbjct: 96  FGVPAPSAGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRR-IRRERNKMAAAKC 154

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
           (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
           morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 338 STSSGMPQRRSGHQQYQVCKLRDTEW 261
           STS+    R SG Q+YQ+C + +  W
Sbjct: 650 STSTTSSPRHSGRQEYQICPIGEHTW 675

>RX1_BRARE (O42356) Retinal homeobox protein Rx1|
          Length = 330

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 125 TPLHGSPKFFADTGTLQLLTPTHAXLSDCQSLRAAAFAMAVAPTGATRCP 274
           TP+H  P F   T  LQ   P H+ LS  Q +  +   MA  P    +CP
Sbjct: 243 TPVHSIPGFMGPTQGLQTGYPGHSFLSPPQPMAQSMQPMAPPP---YQCP 289

>FOS_MSVFB (P01102) p55-v-fos transforming protein|
          Length = 381

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 277 FGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSC 98
           +G P+ + G+Y+  E   + +   AQ   RRG+  Q +   +E RR ++R   K     C
Sbjct: 96  YGLPTQSAGAYARAEMVKTVSGGRAQSIGRRGKVEQLSPEEEEKRR-IRRERNKMAAAKC 154

>ALR_HUMAN (P55789) Augmenter of liver regeneration (hERV1 protein)|
          Length = 125

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
 Frame = -1

Query: 352 QRSGPALRLECPKEGQVISSIKFASFGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQL 173
           Q+     R +CP + + +    +A   T      +Y     +  Q   +AQ      +  
Sbjct: 5   QKRDTKFREDCPPDREELGRHSWAVLHT----LAAYYPDLPTPEQQQDMAQFIHLFSKFY 60

Query: 172 QCAGVSKELRRSMQRSHKKSCGRSCMLM-TCFI-NVVSRKEGAKPDSCXFVDKQARN 8
            C   +++LR+ + R+H  +  R+C     C + N V+RK G     C  VD++ R+
Sbjct: 61  PCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRD 117

>FOS_BOVIN (O77628) Proto-oncogene protein c-fos (Cellular oncogene fos)|
          Length = 380

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 277 FGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSC 98
           +G P+ + G+YS      +     AQ   RRG+  Q +   +E RR ++R   K     C
Sbjct: 96  YGVPTPSAGAYSRAGVMKTMTGGRAQSIGRRGKVEQLSPEEEEKRR-IRRERNKMAAAKC 154

>HEM4_BACSU (P21248) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS)|
           (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane
           hydrolyase [cyclizing])
          Length = 262

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 41  IWFRPLLPTNNIYETCHEHAASTTRLFVTPLHGSPKFFADTGTLQLLTPTHAXLS 205
           I FR  LP N++ E   E  A+   L  T ++G+  FF+     QL+ P H  ++
Sbjct: 41  ITFRRALP-NDVAEQVREDLAAPGWLVFTSVNGADFFFSYLKENQLILPAHKKIA 94

>FOS_PIG (O97930) Proto-oncogene protein c-fos (Cellular oncogene fos)|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 277 FGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSC 98
           +G P+ + G+YS      +     AQ   RRG+  Q +   +E RR ++R   K     C
Sbjct: 96  YGVPTPSAGAYSRAGAVKTMPGGRAQSIGRRGKVEQLSPEEEEKRR-IRRERNKMAAAKC 154

>CARB_PYRAE (Q8ZY48) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1024

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 357 NYRGPGQHFVWNAPKKVRSSAVSSLQASGH 268
           NY GP Q+ +   P+  RSSA++S +ASG+
Sbjct: 284 NYAGPEQYAIETNPRMSRSSALAS-KASGY 312

>CHSB_EMENI (Q00757) Chitin synthase B (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase B) (Class-III chitin
           synthase B)
          Length = 916

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 283 ASFGTPSGTCGSYSHGECSSSQALAVAQPXMRRG 182
           A+FG P      Y+  E SS++A    Q   RRG
Sbjct: 105 AAFGVPGRVASPYARSETSSTEAWRQRQAGARRG 138

>TAT_HV2ST (P20880) TAT protein (Transactivating regulatory protein)|
          Length = 130

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 268 PSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSCMLM 89
           P G+ GSY+     +S+  A AQ  +  G+++    + + L     + + K C   C + 
Sbjct: 8   PEGSLGSYNEPSSCTSEQDAAAQGLVSPGDEI-LYQLYQPLEACDNKCYCKKCCYHCQM- 65

Query: 88  TCFIN 74
            CF+N
Sbjct: 66  -CFLN 69

>SUSY_SOYBN (P13708) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP|
           glucosyltransferase) (Nodulin-100)
          Length = 805

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -1

Query: 373 VSSQQKLQRSGPALRLECPKEGQVISSIKFASFG---TPSGTCGSYSHGECSSSQA 215
           +SSQ    R+G   R+ C   G  +    + +FG     + TCG  +   C+   A
Sbjct: 643 ISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPA 698

>RX1_ASTFA (Q9I9D5) Retinal homeobox protein Rx1|
          Length = 334

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 125 TPLHGSPKFFADTGTLQLLTPTHAXLSDCQSLRAAAFAMAVAPTGATRCP 274
           TP+H  P F   +  LQ   P H  L+  QS+  +   MA  P    +CP
Sbjct: 248 TPVHSIPGFMGPSQGLQAGYPGHGFLNTPQSMGQSMQPMAPPP---YQCP 294

>FOS_MESAU (O88479) Proto-oncogene protein c-fos (Cellular oncogene fos)|
          Length = 381

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 277 FGTPSGTCGSYSHGECSSSQALAVAQPXMRRGEQLQCAGVSKELRRSMQRSHKKSCGRSC 98
           +G P+ + G+YS      + +   AQ   RRG+  Q +   +E RR ++R   K     C
Sbjct: 96  YGVPTPSTGAYSRAGMVKTVSGGRAQSIGRRGKVEQLSPEEEEKRR-IRRERNKMAAAKC 154

>CATA_CAUCR (O31066) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 737

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 360 RNYRGPGQHFVWNAPKKVRSSAVSSLQASG 271
           RNYRGPG+H++  AP++        L  SG
Sbjct: 591 RNYRGPGKHYM--APEEALVDRAQLLGLSG 618

>RAD2_YEAST (P07276) DNA-repair protein RAD2|
          Length = 1031

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 359 EITEVRASTSSGMPQRRSGHQQYQVCKLRDTEWHLWELQP 240
           +I    +S ++  PQ+RS   + + C   + EW   EL+P
Sbjct: 340 KIVRHESSNATTAPQKRSNRSEDEGCDSDECEWEEVELKP 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,424,387
Number of Sequences: 219361
Number of extensions: 979450
Number of successful extensions: 2741
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2739
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)