| Clone Name | rbaal13n18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence Length = 163056 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 140 caccaacaaatcttcattttaca 162 ||||||||||||||||||||||| Sbjct: 161766 caccaacaaatcttcattttaca 161788
>emb|BX119910.7| Zebrafish DNA sequence from clone DKEY-17C10 in linkage group 10, complete sequence Length = 199662 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 140 caccaacaaatcttcattttaca 162 ||||||||||||||||||||||| Sbjct: 13848 caccaacaaatcttcattttaca 13870
>gb|AC154641.2| Mus musculus BAC clone RP23-276C17 from chromosome 16, complete sequence Length = 190523 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 63 cacatacagcaaagacatctctgaca 88 ||||||||||||| |||||||||||| Sbjct: 31142 cacatacagcaaaaacatctctgaca 31167
>dbj|AB158556.1| Paralichthys olivaceus pre-mRNA, containing exons for immunoglobulin M and immunoglobulin D, partial cds Length = 4320 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 453 gtcagtggaaacaactcaaatc 474 |||||||||||||||||||||| Sbjct: 2346 gtcagtggaaacaactcaaatc 2367
>dbj|AB052658.1| Paralichthys olivaceus mRNA for immunoglobulin D, complete cds Length = 3244 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 453 gtcagtggaaacaactcaaatc 474 |||||||||||||||||||||| Sbjct: 1270 gtcagtggaaacaactcaaatc 1291
>emb|AL645924.13| Human DNA sequence from clone RP11-503N18 on chromosome 4, complete sequence Length = 168683 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gatcctggcagctccccatca 374 ||||||||||||||||||||| Sbjct: 121559 gatcctggcagctccccatca 121539
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 cagtacagtagtagatatgta 209 ||||||||||||||||||||| Sbjct: 55773 cagtacagtagtagatatgta 55793
>emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 in linkage group 11, complete sequence Length = 155980 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 atcatcaggtgattgggcatc 232 ||||||||||||||||||||| Sbjct: 94550 atcatcaggtgattgggcatc 94530
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 cagtacagtagtagatatgta 209 ||||||||||||||||||||| Sbjct: 24166548 cagtacagtagtagatatgta 24166568
>emb|AL929286.13| Zebrafish DNA sequence from clone CH211-117K10 in linkage group 11, complete sequence Length = 168222 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 atcatcaggtgattgggcatc 232 ||||||||||||||||||||| Sbjct: 107349 atcatcaggtgattgggcatc 107369
>emb|Z54336.1|HSL25G12 Human DNA sequence from clone LA04NC01-25G12 on chromosome 4, complete sequence Length = 37153 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gatcctggcagctccccatca 374 ||||||||||||||||||||| Sbjct: 19277 gatcctggcagctccccatca 19257
>gb|BC077300.1| Xenopus laevis MGC80192 protein, mRNA (cDNA clone MGC:80192 IMAGE:4970737), complete cds Length = 2258 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cttcattttacaatgcaagc 170 |||||||||||||||||||| Sbjct: 1935 cttcattttacaatgcaagc 1916
>ref|XM_368337.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00907.4) partial mRNA Length = 420 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 aaaatggcattgatctcctc 297 |||||||||||||||||||| Sbjct: 410 aaaatggcattgatctcctc 391
>gb|BC070533.1| Xenopus laevis hypothetical protein MGC78839, mRNA (cDNA clone MGC:78839 IMAGE:3402761), complete cds Length = 3493 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 644 aaagaaggaaatttaagaag 663 |||||||||||||||||||| Sbjct: 2440 aaagaaggaaatttaagaag 2459
>gb|AC133179.3| Mus musculus BAC clone RP24-134P14 from chromosome 14, complete sequence Length = 160216 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 atgacatctcctccaaaatc 348 |||||||||||||||||||| Sbjct: 35695 atgacatctcctccaaaatc 35676
>emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on chromosome X Contains a N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (NAT5) pseudogene, complete sequence Length = 125971 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aggatcctggcagctcccca 371 |||||||||||||||||||| Sbjct: 125044 aggatcctggcagctcccca 125025
>emb|AL928596.5| Human DNA sequence from clone RP11-1037J10 on chromosome X, complete sequence Length = 64394 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 agtggaaacaactcaaatca 475 |||||||||||||||||||| Sbjct: 44720 agtggaaacaactcaaatca 44701
>emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chromosome 9, complete sequence Length = 124531 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 ggcagataagttctatgatacatc 34 |||||||||| ||||||||||||| Sbjct: 20920 ggcagataagctctatgatacatc 20943
>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109471 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 gcagctccccatcagcaactgaataaag 388 ||||||||||| ||||||| |||||||| Sbjct: 77488 gcagctccccaccagcaacggaataaag 77461
>emb|BX000995.12| Mouse DNA sequence from clone RP23-106K17 on chromosome 11 Contains a protease pseuodogene, complete sequence Length = 189417 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tctctgacagcttaacaaaa 99 |||||||||||||||||||| Sbjct: 149781 tctctgacagcttaacaaaa 149800
>gb|AC008885.5| Homo sapiens chromosome 5 clone CTD-2218K11, complete sequence Length = 127790 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 456 agtggaaacaactcaaatcaactgatga 483 |||| |||||||||||||||||| |||| Sbjct: 1160 agtgaaaacaactcaaatcaactaatga 1133
>gb|AC108174.1| Homo sapiens chromosome 5 clone RP11-78C3, complete sequence Length = 162435 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 456 agtggaaacaactcaaatcaactgatga 483 |||| |||||||||||||||||| |||| Sbjct: 69575 agtgaaaacaactcaaatcaactaatga 69602
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 acaaatcttcattttacaat 164 |||||||||||||||||||| Sbjct: 94697 acaaatcttcattttacaat 94716
>dbj|AK162061.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length enriched library, clone:7330407L19 product:testicular cell adhesion molecule 1, full insert sequence Length = 1280 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 actgaataaagatctctctt 397 |||||||||||||||||||| Sbjct: 943 actgaataaagatctctctt 924
>gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, complete sequence Length = 202640 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cacaaacacatacagcaaag 76 |||||||||||||||||||| Sbjct: 49845 cacaaacacatacagcaaag 49864
>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence Length = 174529 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 445 cagattaggtcagtggaaacaactcaaa 472 |||||| |||||||||||| |||||||| Sbjct: 116131 cagatttggtcagtggaaagaactcaaa 116158
>dbj|AP000639.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-26D11, complete sequences Length = 103758 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gaataaagatctctctttct 400 |||||||||||||||||||| Sbjct: 14935 gaataaagatctctctttct 14954
>gb|AC125100.4| Mus musculus BAC clone RP24-206N14 from 9, complete sequence Length = 169501 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ctacaagggcacaaacacatacag 71 ||||||| |||||||||||||||| Sbjct: 153634 ctacaagtgcacaaacacatacag 153611
>gb|AC134893.4| Mus musculus BAC clone RP24-251N8 from 9, complete sequence Length = 166674 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ctacaagggcacaaacacatacag 71 ||||||| |||||||||||||||| Sbjct: 25194 ctacaagtgcacaaacacatacag 25171
>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete sequence Length = 165092 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 648 aaggaaatttaagaagctttgcct 671 |||||||||||| ||||||||||| Sbjct: 77701 aaggaaatttaataagctttgcct 77678
>emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chromosome 2, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 caaagaaggaaatttaagaa 662 |||||||||||||||||||| Sbjct: 185943 caaagaaggaaatttaagaa 185962
>emb|AL604045.7| Mouse DNA sequence from clone RP23-418O11 on chromosome 11, complete sequence Length = 221399 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 actgaataaagatctctctt 397 |||||||||||||||||||| Sbjct: 59530 actgaataaagatctctctt 59511
>emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chromosome X, complete sequence Length = 185389 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cacaaacacatacagcaaagacat 80 |||||||||||||||| ||||||| Sbjct: 136482 cacaaacacatacagccaagacat 136459 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,091,124 Number of Sequences: 3902068 Number of extensions: 7091124 Number of successful extensions: 139119 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138995 Number of HSP's gapped (non-prelim): 124 length of query: 701 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 678 effective length of database: 17,143,297,704 effective search space: 11623155843312 effective search space used: 11623155843312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)