>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 729

 Score =  250 bits (639), Expect = 3e-66
 Identities = 114/134 (85%), Positives = 127/134 (94%)
 Frame = -3

Query: 704 KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
           +LVRIM+ FNLKMCSTDFNSR+YYVNIRKAML+GYFMQVAHLERTGHYLTVKDNQVVHLH
Sbjct: 594 QLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLH 653

Query: 524 PSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLER 345
           PSNC+DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWL+D+A  YYDL+NFP+CEAKR LE+
Sbjct: 654 PSNCLDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRALEK 713

Query: 344 LHNKRERERAASRN 303
           L+ KRERE+  S+N
Sbjct: 714 LYKKREREKNESKN 727

>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score =  198 bits (504), Expect = 1e-50
 Identities = 89/121 (73%), Positives = 106/121 (87%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
            +L RIM  FNL   STDF SR+YY+NIRKA+++GYFMQVAHLERTGHYLTVKDNQVV LH
Sbjct: 663  QLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLH 722

Query: 524  PSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLER 345
            PS  +DHKPEWV+YNE+VLTT+N+IRT TDI+ EWL+ IAPQYYD++NFP CEAKR L+R
Sbjct: 723  PSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDR 782

Query: 344  L 342
            +
Sbjct: 783  I 783

>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent
            RNA helicase #46)
          Length = 795

 Score =  198 bits (504), Expect = 1e-50
 Identities = 89/121 (73%), Positives = 106/121 (87%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
            +L RIM  FNL   STDF SR+YY+NIRKA+++GYFMQVAHLERTGHYLTVKDNQVV LH
Sbjct: 663  QLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLH 722

Query: 524  PSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLER 345
            PS  +DHKPEWV+YNE+VLTT+N+IRT TDI+ EWL+ IAPQYYD++NFP CEAKR L+R
Sbjct: 723  PSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDR 782

Query: 344  L 342
            +
Sbjct: 783  I 783

>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase F56D2.6 (EC 3.6.1.-)
          Length = 739

 Score =  185 bits (469), Expect = 1e-46
 Identities = 82/127 (64%), Positives = 105/127 (82%)
 Frame = -3

Query: 704 KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
           +L R+M  +NL+  STDF SR+YY+NIRKA+++G+FMQVAHLER+GHY+TVKDNQ+V+LH
Sbjct: 607 QLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLH 666

Query: 524 PSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLER 345
           PS  +DHKPEW +YNE+VLTT+NFIRTVTD+R EWL+ IAPQYYDL NFP  + KR L  
Sbjct: 667 PSTVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDNFPDGDTKRKLTT 726

Query: 344 LHNKRER 324
           +    +R
Sbjct: 727 VMQTLQR 733

>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43|
            (EC 3.6.1.-) (Helicase JA1)
          Length = 767

 Score =  144 bits (364), Expect = 2e-34
 Identities = 71/130 (54%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
 Frame = -3

Query: 707  NKLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGH--YLTVKDNQVV 534
            ++L R+M  +NL++ +TD+ S +Y+ NIRKA+ SG+FMQVA  +R+G   Y+TVKDNQ V
Sbjct: 621  SQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDV 679

Query: 533  HLHPSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRV 354
             +HPS  + H  EWVIYNE+VLT++N+IRTVT +R EWLI+IAP YYDL+NF   + K  
Sbjct: 680  LIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLS 739

Query: 353  LERLHNKRER 324
            LER+  K +R
Sbjct: 740  LERIKEKVDR 749

>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            prp43 (EC 3.6.1.-)
          Length = 735

 Score =  134 bits (336), Expect = 4e-31
 Identities = 67/135 (49%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTG-HYLTVKDNQVVHL 528
            +L R M    +++ ST F+ + YYVNIR+A++SG+FMQVA     G +Y+T+KDNQVV L
Sbjct: 600  QLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSL 659

Query: 527  HPSNCMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFP-SCEAKRVL 351
            HPS  +   PEWV+YNE+VLTT++FIR VT IR EWLI++AP YYDL +F  + E K  L
Sbjct: 660  HPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDFDNNKEVKSAL 719

Query: 350  ERLHNKRERERAASR 306
            ++++    R +  +R
Sbjct: 720  QKVYQMAARSKKNAR 734

>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1041

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 635  YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHP-SNCMDHKPEWVIYNEYVLTTR 459
            Y+ +RKA+ +GYF   A L R+G Y TVK  Q V +HP S+  + +P W++Y+E VLTT+
Sbjct: 936  YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 994

Query: 458  NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRE 327
             F+R V +I   WL+++AP YY         AK++ +++   RE
Sbjct: 995  EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTRE 1038

>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1044

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 635  YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHP-SNCMDHKPEWVIYNEYVLTTR 459
            Y+ +RKA+ +GYF   A L R+G Y TVK  Q V +HP S+  + +P W++Y+E VLTT+
Sbjct: 939  YIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTK 997

Query: 458  NFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRE 327
             F+R V +I   WL+++AP YY         AK++ +++   RE
Sbjct: 998  EFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTRE 1041

>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-4 (EC 3.6.1.-) (Sex determination protein mog-4)
            (Masculinization of germ line protein 4)
          Length = 1008

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
 Frame = -3

Query: 632  VNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRN 456
            + IRKA+ +GYF  V+ L+ TGHY TVK     H HP++C+ +  P WV+Y E V T++ 
Sbjct: 902  IKIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKE 961

Query: 455  FIRTVTDIRGEWLIDIAPQYY 393
            F+R +++I   WL+++AP YY
Sbjct: 962  FMREMSEIESGWLLEVAPHYY 982

>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)|
          Length = 1055

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
 Frame = -3

Query: 650  NSREYYVNIRKAMLSGYFMQVAHLERTGH-YLTVKDNQVVHLHPSNCM-DHKPEWVIYNE 477
            NS E    I+KA+ +GYF   A L+R+G  Y TVK NQ V++HPS+ + + KP+ +IY E
Sbjct: 951  NSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFE 1010

Query: 476  YVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTN 381
             VLTT+ + R +T+I+ EWL++I+P Y+   N
Sbjct: 1011 LVLTTKEYCRQITEIQPEWLLEISPHYFKPEN 1042

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
            protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
 Frame = -3

Query: 632  VNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRN 456
            V ++KA+ SG+F   A  +    Y T+ D QVV++HPS+ + + +PEWV+Y+E VLTT+ 
Sbjct: 1101 VRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1160

Query: 455  FIRTVTDIRGEWLIDIAPQYY---DLTNFPSCEAKRVLERLHNKRERERA 315
            ++R VT I   WL++ AP ++   D T     + ++ LE L+N+ E   A
Sbjct: 1161 YMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNA 1210

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            (EC 3.6.1.-)
          Length = 1168

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 39/128 (30%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
            +L+ IM  + L + +   N    +  IRKA+ +G+F   A  +    Y T+ +NQ V++H
Sbjct: 1031 QLLSIMDKYKLDVVTAGKN----FTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIH 1086

Query: 524  PSNCM-DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLE 348
            PS+ +   +P+WVIY++ V+TT+ ++R VT I  +WL+++AP+++ +++      ++  E
Sbjct: 1087 PSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQE 1146

Query: 347  RLHNKRER 324
            R+    +R
Sbjct: 1147 RIEPLYDR 1154

>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 703

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
 Frame = -3

Query: 626 IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM--DHKPEWVIYNEYVLTTRNF 453
           + + ++SG+F   A    TG Y T++D+  +H+HP++ +  +  P WVIYNE + T++ +
Sbjct: 606 VLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYY 665

Query: 452 IRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKR 357
           +R VT I   WL+++AP +Y      S +AKR
Sbjct: 666 MRDVTAIESAWLLELAPHFYQQGTHLSLKAKR 697

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-5 (EC 3.6.1.-) (Sex determination protein mog-5)
            (Masculinization of germ line protein 5)
          Length = 1200

 Score = 77.0 bits (188), Expect = 5e-14
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
 Frame = -3

Query: 704  KLVRIMTXFNLKM--CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVH 531
            +L+ IM    L M  C  D +       ++KA+ SG+F   A  +    Y T+ D Q V+
Sbjct: 1056 QLLGIMDRHKLLMVSCGRDVS------RVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVY 1109

Query: 530  LHPSN-CMDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYY---DLTNFPSCEA 363
            +HPS+ C   +PEWV+Y+E V+TT+ ++R VT I  +WL++ AP ++   D T   + + 
Sbjct: 1110 IHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKIGDSTKLSTFKR 1169

Query: 362  KRVLERLHNK 333
             + ++ L +K
Sbjct: 1170 NQKIDPLFDK 1179

>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box
            protein 38)
          Length = 1227

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
            K + +    +L  C TD++       +RK + + YF Q A L+  G Y+ ++     HLH
Sbjct: 1049 KDIMVQQRMSLASCGTDWDI------VRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLH 1102

Query: 524  PSNC---MDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDL 387
            P++    M + P++++Y+E V+TT+ +++ VT + GEWL ++ P +Y +
Sbjct: 1103 PTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSV 1151

>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 720

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = -3

Query: 626 IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM--DHKPEWVIYNEYVLTTRNF 453
           + + ++SG+F   A    TG Y T++D+  +H+HP++ +  +  P WVIYNE + T++ +
Sbjct: 606 VLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYY 665

Query: 452 IRTVTDIRGEWLIDIAPQYY 393
           +R VT I   WL+++AP +Y
Sbjct: 666 MRDVTAIESAWLLELAPHFY 685

>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLE-RTGHYLTVKDNQVVHL 528
            +L+R+M  +   + S     RE    I +A+ SGYF  VA  +   G Y T+ +N  V++
Sbjct: 1027 QLIRLMDRYRHPVVSCG-RKREL---ILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYM 1082

Query: 527  HPSNCMDHKP-EWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTN 381
            HPS  +  K  EWVIY+E + T++ ++ TV+ +  +WL+++AP ++   N
Sbjct: 1083 HPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFAN 1132

>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
            (EC 3.6.1.-)
          Length = 1145

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = -3

Query: 626  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKP-EWVIYNEYVLTTRNFI 450
            IRK  +SG+FM  A  +    Y T+     V +HPS+ +  K  E+V+Y+  VLT+R ++
Sbjct: 1021 IRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYM 1080

Query: 449  RTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRV-LERLHNKRERERAASR 306
              VT I  +WL+++AP +Y   +  S   K+  +  LHNK  +++ + R
Sbjct: 1081 SQVTSIEPQWLLEVAPHFYKAGDAESQSRKKAKIIPLHNKFAKDQNSWR 1129

>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC|
           3.6.1.-)
          Length = 732

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
 Frame = -3

Query: 707 NKLVRIMTXFNLKMCSTD--FNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVV 534
           ++LVR++  F ++  S+    N  E   NIR+ +++G+F Q A    TG Y+TVK++   
Sbjct: 602 SQLVRLLKRFEIEKVSSRGLINCSE---NIRQCLVTGFFSQAAQYHYTGKYMTVKESFPF 658

Query: 533 HLHPSNCMDHK---PEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEA 363
           +++  + +  K   P+WVI+ E +   ++ IR VT I  EWL ++AP YY+         
Sbjct: 659 NMYKGSSIMFKKDYPKWVIFTEVM---QDSIRDVTVIEPEWLYELAPHYYEFGTEGELAE 715

Query: 362 KRV 354
           KR+
Sbjct: 716 KRM 718

>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)|
          Length = 719

 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -3

Query: 629 NIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM-DHKPEWVIYNEYVLTTRNF 453
           N+  + LSGY    A L   G Y T+  NQ + +HPS+ +   K E ++Y+E V TT+++
Sbjct: 635 NLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSY 694

Query: 452 IRTVTDIRGEWLIDIAPQY 396
           +R V+ IR  WL  +AP Y
Sbjct: 695 VRGVSSIRSNWLNAVAPHY 713

>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = -3

Query: 674 LKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDH-KP 498
           LKM     +SR    ++R+ M    FM  A L+  G Y T   +Q V +HPS+ + H KP
Sbjct: 595 LKMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKP 654

Query: 497 EWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYY 393
             V+Y   + T + ++R +  +  EWL + AP Y+
Sbjct: 655 ACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYF 689

>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = -3

Query: 674 LKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDH-KP 498
           LKM     +SR    ++R+ +    FM  A L+  G Y T   +Q V +HPS+ + H KP
Sbjct: 604 LKMSMPIASSRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKP 663

Query: 497 EWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYY 393
             V+Y E + T + ++R +  I  +WL + AP+Y+
Sbjct: 664 ACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698

>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-1 (EC 3.6.1.-) (Sex determination protein mog-1)
            (Masculinization of germ line protein 1)
          Length = 1131

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
 Frame = -3

Query: 704  KLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLH 525
            +L  IM    L + S   N  E+ + +RK + S YF   A L+  G Y+ V+      LH
Sbjct: 957  QLKEIMQDLKLPLIS---NGSEWDI-VRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLH 1012

Query: 524  PSNC---MDHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDL 387
            P++    M   P++V+Y+E ++T + +++ VT +   WL ++ P +Y +
Sbjct: 1013 PTSALFGMGFMPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSI 1061

>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16|
            (EC 3.6.1.-)
          Length = 1173

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = -3

Query: 626  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCM---DHKPEWVIYNEYVLTTRN 456
            +R+ + S YF Q A  +  G Y+ ++     HLH ++ +    + P++VIY+E VLT++ 
Sbjct: 1028 VRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKE 1087

Query: 455  FIRTVTDIRGEWLIDIAPQYYDL 387
            ++  VT +   WL +    YY +
Sbjct: 1088 YMNIVTSVDPYWLAEFGGVYYSV 1110

>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-)
          Length = 1071

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = -3

Query: 626  IRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMD---HKPEWVIYNEYVLTTRN 456
            I+K + SG+  Q A +    +Y+ +K    V LHP++ +      P +V+Y+E ++T++ 
Sbjct: 903  IKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKE 962

Query: 455  FIRTVTDIRGEWLIDIAPQYYDL 387
            +I  VT +   WL++     YD+
Sbjct: 963  YICCVTSVDPFWLMEYGGLLYDI 985

>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2 (EC|
            3.6.1.-)
          Length = 876

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
 Frame = -3

Query: 635  YVNIR--KAMLSGYFMQVAHLERTGHYLTVKDNQV--VHLHPSNCM--DHKPE------W 492
            Y+N R  +  +SG+ M +  L  TG+    + +    V +HP++ +  +HK +      +
Sbjct: 770  YINARITRCFISGFPMNIVQLGPTGYQTMGRSSGGLNVSVHPTSILFVNHKEKAQRPSKY 829

Query: 491  VIYNEYVLTTRNFIRTVTDI-RGEWLIDIAPQYY 393
            V+Y + +LT++ FIR    I + EWLID+ PQ +
Sbjct: 830  VLYQQLMLTSKEFIRDCLVIPKEEWLIDMVPQIF 863

>YK99_SCHPO (Q9HE06) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C20H4.09 (EC 3.6.1.-) (DEAH-box helicase
           C20H4.09)
          Length = 647

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
 Frame = -3

Query: 701 LVRIMTXFNL----KMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVV 534
           LVR +  F++    ++ S+D +       I K +L G+   VAHL+  G Y T+   QV 
Sbjct: 546 LVRFLNKFSIPTAQRLPSSDCSK------ILKCLLDGFVRNVAHLQNDGSYKTIGGKQVW 599

Query: 533 HLHPSNCMDHKPEWVIYNEYVLT-TRNFIRTVTDIRGEWL 417
               S   + K  W++Y+  V + T+ F++ ++ I   WL
Sbjct: 600 LDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWL 639

>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)|
           (DEAH box RNA helicase DHR2) (Helicase JA2)
          Length = 735

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -3

Query: 641 EYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC--MDHKPEWVIYNEYVL 468
           E    I K  L+G+    A       Y TV   + + +HPS+   M+     ++Y EYV 
Sbjct: 640 ELISKILKCFLTGFIKNTAIGMPDRSYRTVSTGEPISIHPSSMLFMNKSCPGIMYTEYVF 699

Query: 467 TTRNFIRTVTDIRGEWLIDI 408
           TT+ + R V+ I   WL ++
Sbjct: 700 TTKGYARNVSRIELSWLQEV 719

>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-) (DEAH|
            box protein 37)
          Length = 1157

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -3

Query: 563  YLTVKDNQVVHLHPSNCMDHK-PEWVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQY 396
            Y T   +  V +HPS+ +  + PE+V+Y E V TT+ +++ V+ +  +W+  + P Y
Sbjct: 955  YKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSY 1011

>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)|
          Length = 1192

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = -3

Query: 530  LHPSNCMDHK-PEWVIYNE-YVL----TTRNFIRTVTDIRGEWLIDIAP 402
            LH S+ +  K PEWVIY E Y L    +T+ FIR +T I  EWL+   P
Sbjct: 991  LHVSSVLRQKAPEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVP 1039

>VGA_BPPHX (P03631) A protein (GPA)|
          Length = 513

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
 Frame = -3

Query: 713 LDNKLVRIMTXFNLKMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVV 534
           +DN++  +    + +M   +F++ + YV+  KA        V+  E+    L    N + 
Sbjct: 47  MDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQCYNVLP 106

Query: 533 HLHPSNCMDHKPE----WVIYNEYVLTTRNFIRTVTDIRGEWLIDIAPQY-YDLTNFPSC 369
            L  +N +DH+PE    W + NE  +T   F R +   R   L DI  +Y Y        
Sbjct: 107 QLDINNTIDHRPEGDEKWFLENEKTVT--QFCRKLAAERP--LKDIRDEYNYPKKKGIKD 162

Query: 368 EAKRVLERLHNKRERERAASR 306
           E  R+LE    K  R  A  R
Sbjct: 163 ECSRLLEASTMKSRRGFAIQR 183

>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)|
          Length = 1304

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -3

Query: 635 YVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHK-PEWVIYNEYVLTTR 459
           Y  I  A+LSG    +   E          N    + P++ +  K P+WV+  E V T++
Sbjct: 625 YQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSK 684

Query: 458 NFIRTVTDIRGEWLIDIA 405
            + R V +I  EW+  +A
Sbjct: 685 LWGRMVAEIEPEWIEPLA 702

>DHX15_STRPU (O17438) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase PRP1 (EC 3.6.1.-) (Fragment)
          Length = 455

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 704 KLVRIMTXFNLKMCSTDFNSREYYV 630
           +L RIM  F L+  ST+FNS++YY+
Sbjct: 431 QLARIMDRFALQRTSTNFNSKDYYL 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,797,589
Number of Sequences: 219361
Number of extensions: 2432406
Number of successful extensions: 5323
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5300
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)