ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal14c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EGR2_RAT (P51774) Early growth response protein 2 (EGR-2) (Krox-... 32 1.6
2EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Kro... 32 1.6
3WRKY2_ARATH (Q9FG77) Probable WRKY transcription factor 2 (WRKY ... 30 4.6
4EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Kro... 30 4.6
5LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-lik... 30 4.6
6KCQ1D_HUMAN (Q9H478) KCNQ1 downstream neighbor protein (Beckwith... 30 6.1

>EGR2_RAT (P51774) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 432 PVPHEVAPRPC--PGG*SAVPVLDWKGFKDGCSPWAQQQAERTDHRQDKHIGAGPDRAAG 259
           P P   +P+P   PG    +P  D+ GF    SP           ++D H  AGPDR   
Sbjct: 204 PPPSYPSPKPAMDPGLIPMIP--DYPGFFP--SPC----------QRDPHGAAGPDRKPF 249

Query: 258 SCPSDSLHLP 229
            CP DSL +P
Sbjct: 250 PCPLDSLRVP 259



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>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 432 PVPHEVAPRPC--PGG*SAVPVLDWKGFKDGCSPWAQQQAERTDHRQDKHIGAGPDRAAG 259
           P P   +P+P   PG    +P  D+ GF    SP           ++D H  AGPDR   
Sbjct: 204 PPPSYPSPKPAMDPGLIPMIP--DYPGFFP--SPC----------QRDPHGAAGPDRKPF 249

Query: 258 SCPSDSLHLP 229
            CP DSL +P
Sbjct: 250 PCPLDSLRVP 259



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>WRKY2_ARATH (Q9FG77) Probable WRKY transcription factor 2 (WRKY DNA-binding|
           protein 2)
          Length = 687

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
 Frame = +3

Query: 225 APVDGGYHWDKTQQRDL-------DLLRCACPDGDLSAQL----------VVEPKANSHL 353
           AP + GY+W K  Q+ +          +C  P+  +  ++          ++   A++HL
Sbjct: 270 APAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHL 329

Query: 354 *TPSNRELGLQISPQGKVAAPLHEGQAQG*QGLANWI 464
             P NR  G+Q+    +V     E Q Q     A W+
Sbjct: 330 KPPPNRRSGMQVDGTEQV-----EQQQQQRDSAATWV 361



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>EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
           (AT591)
          Length = 476

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -3

Query: 432 PVPHEVAPRPC--PGG*SAVPVLDWKGFKDGCSPWAQQQAERTDHRQDKHIGAGPDRAAG 259
           P P   +P+P   PG    +P  D+ GF          Q +R     D H  AGPDR   
Sbjct: 204 PPPSYPSPKPATDPGLFPMIP--DYPGF-------FPSQCQR-----DLHGTAGPDRKPF 249

Query: 258 SCPSDSLHLP 229
            CP D+L +P
Sbjct: 250 PCPLDTLRVP 259



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>LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-like domains protein|
            3 precursor
          Length = 1117

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -3

Query: 492  FGSALKRQRLSNWPVLVNLGPVPHEVAPRPCPGG*SAVPVLDWKGFKDGCSPWAQQQAER 313
            FG  L+R  L  +    +    P +  PRPC G   + P LD        S   +   ER
Sbjct: 1039 FGKPLRRPHLDAF----SSSAQPPDCQPRPCHGKSLSSPELD--------SESEENDKER 1086

Query: 312  TDHRQDKH 289
            TD R++ H
Sbjct: 1087 TDFREENH 1094



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>KCQ1D_HUMAN (Q9H478) KCNQ1 downstream neighbor protein (Beckwith-Wiedemann|
           region transcript protein)
          Length = 68

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 435 GPVPHEVAPRPCPGG*SAVPVLDWKGFKDGCSPWAQQQAER 313
           GP      P P PG    V +  WKG   GCSP    Q  R
Sbjct: 7   GPTAEHQLPMPPPG----VRLDSWKGVASGCSPSKASQEAR 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,228,388
Number of Sequences: 219361
Number of extensions: 1782626
Number of successful extensions: 4592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4587
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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