Clone Information

BLAST Search Result

Clone Name	rbaal14c15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC084218.6\| Oryza sativa (japonica cultivar-group) chromosome...	278	2e-71
2	gb\|AC093493.2\| Oryza sativa (japonica cultivar-group) chromosome...	278	2e-71
3	dbj\|AK061885.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
5	dbj\|AK102924.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
6	dbj\|AK065647.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
7	ref\|XM_493929.1\| Oryza sativa (japonica cultivar-group), predic...	272	1e-69
8	gb\|BT018894.1\| Zea mays clone EL01T0206D09.d mRNA sequence	258	2e-65
9	gb\|BT017569.1\| Zea mays clone EL01N0426F07.c mRNA sequence	250	4e-63
10	gb\|BT019204.1\| Zea mays clone Contig877.F mRNA sequence	232	1e-57
11	gb\|BT017999.1\| Zea mays clone EL01N0526F10.c mRNA sequence	232	1e-57
12	gb\|AY110505.1\| Zea mays CL12299_1 mRNA sequence	210	4e-51
13	ref\|NM_116485.2\| Arabidopsis thaliana TOC159 AT4G02510 (TOC159) ...	48	0.031
14	gb\|AC002330.1\| Arabidopsis thaliana BAC T10P11 from chromosome I...	48	0.031
15	emb\|AL161494.2\|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c...	48	0.031
16	gb\|AY133653.1\| Arabidopsis thaliana AT4g02510/T10P11_19 mRNA, co...	48	0.031
17	gb\|AF412063.1\|AF412063 Arabidopsis thaliana AT4g02510/T10P11_19 ...	48	0.031
18	dbj\|AK222164.1\| Arabidopsis thaliana mRNA for chloroplast protei...	48	0.031
19	gb\|AF069298.1\|T14P8 Arabidopsis thaliana BAC T14P8	48	0.031
20	gb\|AC152752.18\| Medicago truncatula clone mth2-89c9, complete se...	44	0.49
21	gb\|AC157758.4\| Medicago truncatula clone mth2-62b13, complete se...	44	0.49
22	gb\|AC010987.9\| Homo sapiens BAC clone RP11-553M15 from 2, comple...	44	0.49
23	ref\|NM_197639.1\| Oryza sativa (japonica cultivar-group) putative...	42	1.9
24	ref\|XM_362002.1\| Magnaporthe grisea 70-15 predicted protein (MG0...	42	1.9
25	gb\|AC163737.3\| Pan troglodytes BAC clone CH251-547O12 from chrom...	42	1.9
26	emb\|AL035588.21\|HS696P19 Human DNA sequence from clone RP4-696P1...	42	1.9
27	gb\|AC020666.8\| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno...	42	1.9
28	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
29	gb\|AC096557.1\| Homo sapiens BAC clone RP11-122A7 from 2, complet...	42	1.9
30	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	1.9
31	dbj\|AK072270.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.9
32	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.9
33	gb\|AC136520.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.6
34	gb\|AC136519.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.6
35	gb\|AC146066.4\| Pan troglodytes BAC clone RP43-60F19 from 7, comp...	40	7.6
36	gb\|AC000119.1\| Homo sapiens BAC clone CTB-104I4 from 7, complete...	40	7.6
37	gb\|AC003079.2\| Homo sapiens BAC clone GS1-303P24 from 7, complet...	40	7.6
38	emb\|Z82242.1\|HS96A9 Human DNA sequence from clone RP1-96A9 on ch...	40	7.6
39	emb\|AL590397.7\| Human DNA sequence from clone RP11-376O21 on chr...	40	7.6
40	emb\|AL445926.5\| Human DNA sequence from clone RP11-439I6 on chro...	40	7.6
41	emb\|AL023655.1\|HS242N11 Human DNA sequence from clone RP1-242N11...	40	7.6
42	emb\|AL662949.4\|OSJN00144 Oryza sativa genomic DNA, chromosome 4,...	40	7.6
43	emb\|AL662959.3\|OSJN00160 Oryza sativa genomic DNA, chromosome 4,...	40	7.6
44	gb\|AF186190.4\| Homo sapiens chromosome 8 clone CTC-369M3 map 8q2...	40	7.6
45	gb\|AC068759.11\| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Can...	40	7.6
46	gb\|AC175822.2\| Pan troglodytes BAC clone CH251-442M6 from chromo...	40	7.6
47	gb\|AC017067.4\|AC017067 Homo sapiens BAC clone RP11-370B11 from 9...	40	7.6
48	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
49	gb\|AC156541.7\| Mus musculus chromosome 1, clone RP23-478I8, comp...	40	7.6
50	gb\|AC027026.11\| Homo sapiens chromosome 11, clone RP11-589F4, co...	40	7.6
51	gb\|AC008176.3\|AC008176 Homo sapiens BAC clone RP11-451F11 from 7...	40	7.6

>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
              complete sequence
          Length = 164898

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Plus

                                                                          
Query: 189    aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
              ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 108126 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 108185

                                                                          
Query: 249    tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
              ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 108186 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 108245

                                                                          
Query: 309    ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
              ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 108246 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 108305

                                                                          
Query: 369    cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
              ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 108306 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 108365

                                                                          
Query: 429    caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
               || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 108366 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 108425

                                                                          
Query: 489    caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
              ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 108426 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 108485

                          
Query: 549    cgccagcctctt 560
               |||| ||||||
Sbjct: 108486 tgccaacctctt 108497



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 37     acaacactctccagccaaaattatgataggaacaatct 74
              ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 107971 acaaccctcttcagccaaaattatgataggaacgatct 108008

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>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0072C16, complete sequence
          Length = 159525

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Plus

                                                                        
Query: 189  aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
            ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 7531 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 7590

                                                                        
Query: 249  tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
            ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 7591 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 7650

                                                                        
Query: 309  ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
            ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 7651 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 7710

                                                                        
Query: 369  cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
            ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 7711 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 7770

                                                                        
Query: 429  caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
             || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 7771 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 7830

                                                                        
Query: 489  caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
            ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 7831 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 7890

                        
Query: 549  cgccagcctctt 560
             |||| ||||||
Sbjct: 7891 tgccaacctctt 7902



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 37   acaacactctccagccaaaattatgataggaacaatct 74
            ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 7376 acaaccctcttcagccaaaattatgataggaacgatct 7413

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>dbj|AK061885.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F07, full
            insert sequence
          Length = 1993

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
            ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 1837 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 1778

                                                                        
Query: 249  tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
            ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1777 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 1718

                                                                        
Query: 309  ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
            ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 1717 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 1658

                                                                        
Query: 369  cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
            ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 1657 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 1598

                                                                        
Query: 429  caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
             || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 1597 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 1538

                                                                        
Query: 489  caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
            ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 1537 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 1478

                        
Query: 549  cgccagcctctt 560
             |||| ||||||
Sbjct: 1477 tgccaacctctt 1466



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 37   acaacactctccagccaaaattatgataggaacaatct 74
            ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 1992 acaaccctcttcagccaaaattatgataggaacgatct 1955

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Plus

                                                                           
Query: 189     aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
               ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 2913515 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 2913574

                                                                           
Query: 249     tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
               ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2913575 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 2913634

                                                                           
Query: 309     ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
               ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 2913635 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 2913694

                                                                           
Query: 369     cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
               ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 2913695 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 2913754

                                                                           
Query: 429     caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
                || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 2913755 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 2913814

                                                                           
Query: 489     caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
               ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 2913815 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 2913874

                           
Query: 549     cgccagcctctt 560
                |||| ||||||
Sbjct: 2913875 tgccaacctctt 2913886



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 37      acaacactctccagccaaaattatgataggaacaatct 74
               ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 2913360 acaaccctcttcagccaaaattatgataggaacgatct 2913397



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     aagctaataagcaaacgatg 208
               ||||||||||||||||||||
Sbjct: 6093582 aagctaataagcaaacgatg 6093563

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>dbj|AK102924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D01, full
            insert sequence
          Length = 4269

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
            ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 4052 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 3993

                                                                        
Query: 249  tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
            ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 3992 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 3933

                                                                        
Query: 309  ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
            ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 3932 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 3873

                                                                        
Query: 369  cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
            ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 3872 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 3813

                                                                        
Query: 429  caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
             || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 3812 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 3753

                                                                        
Query: 489  caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
            ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 3752 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 3693

                        
Query: 549  cgccagcctctt 560
             |||| ||||||
Sbjct: 3692 tgccaacctctt 3681



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 37   acaacactctccagccaaaattatgataggaacaatct 74
            ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 4207 acaaccctcttcagccaaaattatgataggaacgatct 4170

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>dbj|AK065647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038D10, full
            insert sequence
          Length = 3790

 Score =  278 bits (140), Expect = 2e-71
 Identities = 314/372 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  aagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcac 248
            ||||||||| || || || ||||| | ||||| |||||||| ||| |||||||||   ||
Sbjct: 3570 aagctaataggcgaaggagggttcgctgggcctgaagctcctgtaaatggaggctgcaac 3511

                                                                        
Query: 249  tgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgat 308
            ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 3510 tgggataagacccaacagcgcgatctggacctgctccgaggtgcttgtcctgacagtgat 3451

                                                                        
Query: 309  ctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaat 368
            ||| || || || ||||| || |  ||||| |||||  ||||||| || |||||||||||
Sbjct: 3450 ctggccacttagtttgttattcaatccaagacgaaccaccatcttcgagccccttccaat 3391

                                                                        
Query: 369  cgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggga 428
            ||||||||||||||||| ||| || || || |||||||| |||||||||||||| |  ||
Sbjct: 3390 cgagaactgggactgcaaattcgcaccgagagcaaggtctcggcgccacttcatcaaaga 3331

                                                                        
Query: 429  caggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttc 488
             || |||| |||||||| |||||||||||| ||||||||||||||||| | ||| || ||
Sbjct: 3330 aagacccagggttgacagggactggccaatcggataatctttgtctttcaggcgtgcctc 3271

                                                                        
Query: 489  caaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactag 548
            ||| || |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct: 3270 caagttagctccataagcggtgtcgccttgagctcgcattgcacctgtgctcgccaccag 3211

                        
Query: 549  cgccagcctctt 560
             |||| ||||||
Sbjct: 3210 tgccaacctctt 3199



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 37   acaacactctccagccaaaattatgataggaacaatct 74
            ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 3725 acaaccctcttcagccaaaattatgataggaacgatct 3688

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>ref|XM_493929.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2940

 Score =  272 bits (137), Expect = 1e-69
 Identities = 293/345 (84%)
 Strand = Plus / Minus

                                                                        
Query: 216  gggccggaagctccggtagatggaggctatcactgggacaagacccagcagcgcgatctg 275
            ||||| |||||||| ||| |||||||||   ||||||| |||||||| ||||||||||||
Sbjct: 2916 gggcctgaagctcctgtaaatggaggctgcaactgggataagacccaacagcgcgatctg 2857

                                                                        
Query: 276  gacctgctccgatgtgcttgtcctgacggtgatctgtccgctcagcttgttgttgagccc 335
            |||||||||||| |||||||||||||| |||||||| || || || ||||| || |  ||
Sbjct: 2856 gacctgctccgaggtgcttgtcctgacagtgatctggccacttagtttgttattcaatcc 2797

                                                                        
Query: 336  aaggcgaacagccatctttgaaccccttccaatcgagaactgggactgcagattagcccc 395
            ||| |||||  ||||||| || |||||||||||||||||||||||||||| ||| || ||
Sbjct: 2796 aagacgaaccaccatcttcgagccccttccaatcgagaactgggactgcaaattcgcacc 2737

                                                                        
Query: 396  cagggcaaggtcgcggcgccacttcatgagggacaggcccaaggttgacaaggactggcc 455
             || |||||||| |||||||||||||| |  || || |||| |||||||| |||||||||
Sbjct: 2736 gagagcaaggtctcggcgccacttcatcaaagaaagacccagggttgacagggactggcc 2677

                                                                        
Query: 456  aattggataatctttgtcttttaagcgcgcttccaaatttgctccataggcggtatcccc 515
            ||| ||||||||||||||||| | ||| || ||||| || |||||||| ||||| || ||
Sbjct: 2676 aatcggataatctttgtctttcaggcgtgcctccaagttagctccataagcggtgtcgcc 2617

                                                         
Query: 516  ctgagcccgcattgcacctgtgcttgccactagcgccagcctctt 560
             ||||| ||||||||||||||||| ||||| || |||| ||||||
Sbjct: 2616 ttgagctcgcattgcacctgtgctcgccaccagtgccaacctctt 2572

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>gb|BT018894.1| Zea mays clone EL01T0206D09.d mRNA sequence
          Length = 2400

 Score =  258 bits (130), Expect = 2e-65
 Identities = 310/370 (83%)
 Strand = Plus / Minus

                                                                        
Query: 191  gctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcactg 250
            |||||||||| || || ||||||| |||||||||||||| |||||||||||||   || |
Sbjct: 2164 gctaataagcgaaggacggttcactgggccggaagctcctgtagatggaggctgcaaccg 2105

                                                                        
Query: 251  ggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgatct 310
            | || |||||||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 2104 gtacgagacccagaagtgcgatctggacctgctccgaggtgcttgtcctgaccgtgatct 2045

                                                                        
Query: 311  gtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaatcg 370
            | ||||||||||||||||| || ||||| || || |||||||| || |||||||| || |
Sbjct: 2044 gcccgctcagcttgttgttcagaccaagtcgcactgccatcttcgacccccttccgatgg 1985

                                                                        
Query: 371  agaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgagggaca 430
            |||||||||||||||  || || ||||| |||||||| |||||||||||||| || || |
Sbjct: 1984 agaactgggactgcaagttcgcgcccagagcaaggtcccggcgccacttcatcagagaga 1925

                                                                        
Query: 431  ggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttcca 490
            | ||||  ||||| | |||||||||||| ||||| |||||||| || | ||| || ||||
Sbjct: 1924 gacccagcgttgagagggactggccaatcggatagtctttgtccttcaggcgtgcctcca 1865

                                                                        
Query: 491  aatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactagcg 550
            | || |||||||| || || ||||| || || ||||| || || ||||| || |||||||
Sbjct: 1864 agttagctccatatgcagtttccccttgggctcgcatcgcgccagtgctggcaactagcg 1805

                      
Query: 551  ccagcctctt 560
             |||||||||
Sbjct: 1804 acagcctctt 1795



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 37   acaacactctccagccaaaattatgataggaa 68
            ||||| |||| |||||||||||||| ||||||
Sbjct: 2315 acaaccctcttcagccaaaattatggtaggaa 2284

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>gb|BT017569.1| Zea mays clone EL01N0426F07.c mRNA sequence
          Length = 1227

 Score =  250 bits (126), Expect = 4e-63
 Identities = 309/370 (83%)
 Strand = Plus / Minus

                                                                       
Query: 191 gctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatcactg 250
           |||||||||| || || ||||||| |||||||||||||| ||| |||||||||   || |
Sbjct: 942 gctaataagcgaaggacggttcactgggccggaagctcctgtaaatggaggctgcaaccg 883

                                                                       
Query: 251 ggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtgatct 310
           | || |||||||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 882 gtacgagacccagaagtgcgatctggacctgctccgaggtgcttgtcctgaccgtgatct 823

                                                                       
Query: 311 gtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaatcg 370
           | ||||||||||||||||| || ||||| || || |||||||| || |||||||| || |
Sbjct: 822 gcccgctcagcttgttgttcagaccaagtcgcactgccatcttcgacccccttccgatgg 763

                                                                       
Query: 371 agaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgagggaca 430
           |||||||||||||||  || || ||||| |||||||| |||||||||||||| || || |
Sbjct: 762 agaactgggactgcaagttcgcgcccagagcaaggtcccggcgccacttcatcagagaga 703

                                                                       
Query: 431 ggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgcttcca 490
           | ||||  ||||| | |||||||||||| ||||| |||||||| || | ||| || ||||
Sbjct: 702 gacccagcgttgagagggactggccaatcggatagtctttgtccttcaggcgtgcctcca 643

                                                                       
Query: 491 aatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccactagcg 550
           | || |||||||| || || ||||| || || ||||| || || ||||| || |||||||
Sbjct: 642 agttagctccatatgcagtttccccttgggctcgcatcgcgccagtgctggcaactagcg 583

                     
Query: 551 ccagcctctt 560
            |||||||||
Sbjct: 582 acagcctctt 573



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 37   acaacactctccagccaaaattatgataggaa 68
            ||||| |||| |||||||||||||| ||||||
Sbjct: 1093 acaaccctcttcagccaaaattatggtaggaa 1062

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>gb|BT019204.1| Zea mays clone Contig877.F mRNA sequence
          Length = 1517

 Score =  232 bits (117), Expect = 1e-57
 Identities = 300/361 (83%)
 Strand = Plus / Minus

                                                                        
Query: 188  caagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatca 247
            |||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||   |
Sbjct: 1260 caagctaataagcaaaggatggttcactgggccggaaactccggtaaatggaggctgcaa 1201

                                                                        
Query: 248  ctgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtga 307
            | || || |||||||| || || |||||||||||||| || |||||||||||||||||||
Sbjct: 1200 ccggtacgagacccagaagtgcaatctggacctgctctgaggtgcttgtcctgacggtga 1141

                                                                        
Query: 308  tctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaa 367
            |||| || |||||||||||||| || ||||| ||||| |||||||| || |||||||| |
Sbjct: 1140 tctgcccactcagcttgttgttcagaccaagtcgaactgccatcttcgacccccttccga 1081

                                                                        
Query: 368  tcgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggg 427
            | || |||||||||||||  || || ||||| |||||||| || ||||||||||| || |
Sbjct: 1080 tggaaaactgggactgcaagtttgcgcccagagcaaggtcccgacgccacttcatcagag 1021

                                                                        
Query: 428  acaggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgctt 487
            | || ||||||||||| | ||||||| | || ||||| |||||||| || ||||| || |
Sbjct: 1020 agagacccaaggttgagagggactgggctatcggatagtctttgtccttcaagcgtgcct 961

                                                                        
Query: 488  ccaaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccacta 547
            |||  || |||||||| || || ||||| || || ||||| || || ||||| || ||||
Sbjct: 960  ccaggttagctccatatgcagtgtccccttgggctcgcatcgcgccagtgctagcaacta 901

             
Query: 548  g 548
            |
Sbjct: 900  g 900

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>gb|BT017999.1| Zea mays clone EL01N0526F10.c mRNA sequence
          Length = 787

 Score =  232 bits (117), Expect = 1e-57
 Identities = 300/361 (83%)
 Strand = Plus / Minus

                                                                       
Query: 188 caagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatca 247
           |||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||   |
Sbjct: 534 caagctaataagcaaaggatggttcactgggccggaaactccggtaaatggaggctgcaa 475

                                                                       
Query: 248 ctgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtga 307
           | || || |||||||| || || |||||||||||||| || |||||||||||||||||||
Sbjct: 474 ccggtacgagacccagaagtgcaatctggacctgctctgaggtgcttgtcctgacggtga 415

                                                                       
Query: 308 tctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaa 367
           |||| || |||||||||||||| || ||||| ||||| |||||||| || |||||||| |
Sbjct: 414 tctgcccactcagcttgttgttcagaccaagtcgaactgccatcttcgacccccttccga 355

                                                                       
Query: 368 tcgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggg 427
           | || |||||||||||||  || || ||||| |||||||| || ||||||||||| || |
Sbjct: 354 tggaaaactgggactgcaagtttgcgcccagagcaaggtcccgacgccacttcatcagag 295

                                                                       
Query: 428 acaggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgctt 487
           | || ||||||||||| | ||||||| | || ||||| |||||||| || ||||| || |
Sbjct: 294 agagacccaaggttgagagggactgggctatcggatagtctttgtccttcaagcgtgcct 235

                                                                       
Query: 488 ccaaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccacta 547
           |||  || |||||||| || || ||||| || || ||||| || || ||||| || ||||
Sbjct: 234 ccaggttagctccatatgcagtgtccccttgggctcgcatcgcgccagtgctagcaacta 175

            
Query: 548 g 548
           |
Sbjct: 174 g 174

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>gb|AY110505.1| Zea mays CL12299_1 mRNA sequence
          Length = 752

 Score =  210 bits (106), Expect = 4e-51
 Identities = 296/361 (81%)
 Strand = Plus / Plus

                                                                       
Query: 188 caagctaataagcaaacgatggttcaccgggccggaagctccggtagatggaggctatca 247
           |||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||   |
Sbjct: 264 caagctaataagcaaaggatggttcactgggccggaaactccggtaaatggaggctgcaa 323

                                                                       
Query: 248 ctgggacaagacccagcagcgcgatctggacctgctccgatgtgcttgtcctgacggtga 307
           | || || |||||||| || || |||||||||||||| || |||||||||||||||||||
Sbjct: 324 ccggtacgagacccagaagtgcaatctggacctgctctgaggtgcttgtcctgacggtga 383

                                                                       
Query: 308 tctgtccgctcagcttgttgttgagcccaaggcgaacagccatctttgaaccccttccaa 367
           |||| || |||||||||||||| || ||||| ||||| |||||||| ||     |||| |
Sbjct: 384 tctgcccactcagcttgttgttcagaccaagtcgaactgccatcttcgannnnnttccga 443

                                                                       
Query: 368 tcgagaactgggactgcagattagcccccagggcaaggtcgcggcgccacttcatgaggg 427
           | || |||||||||||||  || || ||||| |||||||| || ||||||||||| || |
Sbjct: 444 tggaaaactgggactgcaagtttgcgcccagagcaaggtcccgacgccacttcatcagag 503

                                                                       
Query: 428 acaggcccaaggttgacaaggactggccaattggataatctttgtcttttaagcgcgctt 487
           | || ||||||||||| | ||||||| | || ||||| |||||||| || ||||| || |
Sbjct: 504 agagacccaaggttgagagggactgggctatcggatagtctttgtccttcaagcgtgcct 563

                                                                       
Query: 488 ccaaatttgctccataggcggtatccccctgagcccgcattgcacctgtgcttgccacta 547
           |||  || |||||||| || || ||||| || || ||||| || || ||||| || ||||
Sbjct: 564 ccaggttagctccatatgcagtgtccccttgggctcgcatcgcgccagtgctagcaacta 623

            
Query: 548 g 548
           |
Sbjct: 624 g 624

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>ref|NM_116485.2| Arabidopsis thaliana TOC159 AT4G02510 (TOC159) mRNA, complete cds
          Length = 4740

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 298  ctgacggtgatctgtccgctcagcttgttgtt 329
            ||||| |||||||||||||||| |||||||||
Sbjct: 4397 ctgactgtgatctgtccgctcatcttgttgtt 4366

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>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM, complete
              sequence
          Length = 113566

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 298    ctgacggtgatctgtccgctcagcttgttgtt 329
              ||||| |||||||||||||||| |||||||||
Sbjct: 101849 ctgactgtgatctgtccgctcatcttgttgtt 101880

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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 298    ctgacggtgatctgtccgctcagcttgttgtt 329
              ||||| |||||||||||||||| |||||||||
Sbjct: 144896 ctgactgtgatctgtccgctcatcttgttgtt 144865

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>gb|AY133653.1| Arabidopsis thaliana AT4g02510/T10P11_19 mRNA, complete cds
          Length = 1446

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 298  ctgacggtgatctgtccgctcagcttgttgtt 329
            ||||| |||||||||||||||| |||||||||
Sbjct: 1331 ctgactgtgatctgtccgctcatcttgttgtt 1300

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>gb|AF412063.1|AF412063 Arabidopsis thaliana AT4g02510/T10P11_19 mRNA, complete cds
          Length = 1733

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 298  ctgacggtgatctgtccgctcagcttgttgtt 329
            ||||| |||||||||||||||| |||||||||
Sbjct: 1390 ctgactgtgatctgtccgctcatcttgttgtt 1359

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>dbj|AK222164.1| Arabidopsis thaliana mRNA for chloroplast protein import component
            Toc159-like, partial cds, clone: RAFL23-20-P12
          Length = 2322

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 298  ctgacggtgatctgtccgctcagcttgttgtt 329
            ||||| |||||||||||||||| |||||||||
Sbjct: 1957 ctgactgtgatctgtccgctcatcttgttgtt 1926

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>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
          Length = 94536

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 298  ctgacggtgatctgtccgctcagcttgttgtt 329
            ||||| |||||||||||||||| |||||||||
Sbjct: 1719 ctgactgtgatctgtccgctcatcttgttgtt 1750

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>gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete sequence
          Length = 117577

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 292   cttgtcctgacggtgatctgtccgctcagcttgttgtt 329
             |||||||| || ||||||||||| || |||||||||||
Sbjct: 62237 cttgtcctcacagtgatctgtccactaagcttgttgtt 62200

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>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence
          Length = 106286

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 292   cttgtcctgacggtgatctgtccgctcagcttgttgtt 329
             |||||||| || ||||||||||| || |||||||||||
Sbjct: 12405 cttgtcctcacagtgatctgtccactaagcttgttgtt 12442

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>gb|AC010987.9| Homo sapiens BAC clone RP11-553M15 from 2, complete sequence
          Length = 193319

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 86     agggaaaaatggaactgataca 107
              ||||||||||||||||||||||
Sbjct: 113040 agggaaaaatggaactgataca 113061

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>ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative outer envelope
            protein (OSJNBa0082M15.3), mRNA
          Length = 3275

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 452  ggccaattggataatctttgtcttt 476
            |||||||||| ||||||||||||||
Sbjct: 2788 ggccaattgggtaatctttgtcttt 2764

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>ref|XM_362002.1| Magnaporthe grisea 70-15 predicted protein (MG04447.4) partial cds
          Length = 894

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 cagcgcgatctggacctgctc 284
           |||||||||||||||||||||
Sbjct: 540 cagcgcgatctggacctgctc 520

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>gb|AC163737.3| Pan troglodytes BAC clone CH251-547O12 from chromosome 6, complete
             sequence
          Length = 207116

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   atgagatataagtaaatagat 176
             |||||||||||||||||||||
Sbjct: 97564 atgagatataagtaaatagat 97584

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>emb|AL035588.21|HS696P19 Human DNA sequence from clone RP4-696P19 on chromosome 6p12.3-21.2
            Contains the 3' end of the TFEB gene for transcription
            factor EB (TCFEB), a nucleophosmin (nucleolar
            phosphoprotein B23, numatrin) (NPM1) pseudogene, the MDFI
            gene for MyoD family inhibitor, the 5' end of a novel
            gene and two CpG islands, complete sequence
          Length = 110665

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 156  atgagatataagtaaatagat 176
            |||||||||||||||||||||
Sbjct: 4879 atgagatataagtaaatagat 4859

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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 452    ggccaattggataatctttgtcttt 476
              |||||||||| ||||||||||||||
Sbjct: 109440 ggccaattgggtaatctttgtcttt 109416

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 452      ggccaattggataatctttgtcttt 476
                |||||||||| ||||||||||||||
Sbjct: 20954951 ggccaattgggtaatctttgtcttt 20954975

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>gb|AC096557.1| Homo sapiens BAC clone RP11-122A7 from 2, complete sequence
          Length = 79683

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   agatggaggctatcactggga 253
             |||||||||||||||||||||
Sbjct: 54346 agatggaggctatcactggga 54326

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     agcgcgatctggacctgctcc 285
               |||||||||||||||||||||
Sbjct: 2979116 agcgcgatctggacctgctcc 2979136

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>dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full
            insert sequence
          Length = 3464

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 452  ggccaattggataatctttgtcttt 476
            |||||||||| ||||||||||||||
Sbjct: 2934 ggccaattgggtaatctttgtcttt 2910

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 452      ggccaattggataatctttgtcttt 476
                |||||||||| ||||||||||||||
Sbjct: 20966215 ggccaattgggtaatctttgtcttt 20966239

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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aagctaataagcaaacgatg 208
             ||||||||||||||||||||
Sbjct: 41151 aagctaataagcaaacgatg 41132

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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    aagctaataagcaaacgatg 208
              ||||||||||||||||||||
Sbjct: 141135 aagctaataagcaaacgatg 141116

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>gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, complete sequence
          Length = 183557

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    gggaaaaatggaactgatac 106
             ||||||||||||||||||||
Sbjct: 73565 gggaaaaatggaactgatac 73546

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>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 442   gacaaggactggccaattggataa 465
             ||||||||||||| ||||||||||
Sbjct: 66962 gacaaggactggcaaattggataa 66985

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>gb|AC003079.2| Homo sapiens BAC clone GS1-303P24 from 7, complete sequence
          Length = 62331

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    gggaaaaatggaactgatac 106
             ||||||||||||||||||||
Sbjct: 57839 gggaaaaatggaactgatac 57858

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>emb|Z82242.1|HS96A9 Human DNA sequence from clone RP1-96A9 on chromosome X Contains a CpG
             island, complete sequence
          Length = 91690

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 442   gacaaggactggccaattggataa 465
             ||||||||||||| ||||||||||
Sbjct: 20724 gacaaggactggcaaattggataa 20747

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>emb|AL590397.7| Human DNA sequence from clone RP11-376O21 on chromosome 9 Contains the
             3' end of the PTPRD gene for protein tyrosine phosphatase,
             receptor type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 168323

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 442   gacaaggactggccaattggataa 465
             |||| |||||||||||||||||||
Sbjct: 81052 gacacggactggccaattggataa 81075

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>emb|AL445926.5| Human DNA sequence from clone RP11-439I6 on chromosome 9 Contains the 3'
              end of the PTPRD gene for protein tyrosine phosphatase,
              receptor type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 167253

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 442    gacaaggactggccaattggataa 465
              |||| |||||||||||||||||||
Sbjct: 138078 gacacggactggccaattggataa 138101

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>emb|AL023655.1|HS242N11 Human DNA sequence from clone RP1-242N11 on chromosome 6p22.3-23,
              complete sequence
          Length = 167514

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 442    gacaaggactggccaattggataa 465
              ||||||||||||| ||||||||||
Sbjct: 142079 gacaaggactggcaaattggataa 142102

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>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21,
              complete sequence
          Length = 127162

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 534    tgtgcttgccactagcgccagcct 557
              ||||||||||||||||| ||||||
Sbjct: 103944 tgtgcttgccactagcggcagcct 103921

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>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
              complete sequence
          Length = 150305

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 534    tgtgcttgccactagcgccagcct 557
              ||||||||||||||||| ||||||
Sbjct: 141266 tgtgcttgccactagcggcagcct 141289

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>gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q24.3 , complete
             sequence
          Length = 152405

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 429   caggcccaaggttgacaaggactggcca 456
             |||||||||||||||| ||| |||||||
Sbjct: 99145 caggcccaaggttgaccagggctggcca 99118

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>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183357

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   cattgcacctgtgcttgcca 544
             ||||||||||||||||||||
Sbjct: 13376 cattgcacctgtgcttgcca 13357

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>gb|AC175822.2| Pan troglodytes BAC clone CH251-442M6 from chromosome 7, complete
              sequence
          Length = 163335

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     gggaaaaatggaactgatac 106
              ||||||||||||||||||||
Sbjct: 126259 gggaaaaatggaactgatac 126240

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>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence
          Length = 191373

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 442   gacaaggactggccaattggataa 465
             |||| |||||||||||||||||||
Sbjct: 90208 gacacggactggccaattggataa 90185

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 534     tgtgcttgccactagcgccagcct 557
               ||||||||||||||||| ||||||
Sbjct: 4513534 tgtgcttgccactagcggcagcct 4513557

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>gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, complete sequence
          Length = 173297

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   aggactggccaattggataa 465
             ||||||||||||||||||||
Sbjct: 27193 aggactggccaattggataa 27212

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>gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, complete sequence
          Length = 155376

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 69    caatctgcggggcagaaagggaaaaatg 96
             ||||||| |||||||||||| |||||||
Sbjct: 14221 caatctgaggggcagaaaggaaaaaatg 14248

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>gb|AC008176.3|AC008176 Homo sapiens BAC clone RP11-451F11 from 7p11.2-p21, complete sequence
          Length = 90180

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 442   gacaaggactggccaattggataa 465
             ||||||||||||| ||||||||||
Sbjct: 69398 gacaaggactggcaaattggataa 69375


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,052,887
Number of Sequences: 3902068
Number of extensions: 4052887
Number of successful extensions: 71774
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71540
Number of HSP's gapped (non-prelim): 229
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result